Wall clock time and date at job start Mon Mar 30 2020 05:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.47085 * 2 1 4 4 H 1.09004 * 109.47639 * 305.42082 * 3 2 1 5 5 N 1.46903 * 109.47089 * 65.42326 * 3 2 1 6 6 C 1.46905 * 110.99785 * 257.10438 * 5 3 2 7 7 C 1.50700 * 109.46895 * 175.61350 * 6 5 3 8 8 O 1.21281 * 120.00296 * 359.97438 * 7 6 5 9 9 N 1.34781 * 119.99747 * 180.02562 * 7 6 5 10 10 C 1.46500 * 119.99992 * 179.97438 * 9 7 6 11 11 C 1.50704 * 109.47036 * 179.97438 * 10 9 7 12 12 H 1.07995 * 119.99762 * 0.02562 * 11 10 9 13 13 C 1.37871 * 119.99583 * 179.97438 * 11 10 9 14 14 N 1.31516 * 120.00716 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99898 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.46842 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47406 * 119.99604 * 15 13 11 18 18 H 1.48507 * 109.47184 * 240.00125 * 15 13 11 19 19 C 1.53000 * 109.46959 * 185.41699 * 3 2 1 20 20 C 1.54268 * 110.03492 * 297.16938 * 19 3 2 21 21 C 1.54895 * 104.19425 * 217.10342 * 20 19 3 22 22 C 1.54888 * 102.74873 * 37.94605 * 21 20 19 23 23 C 1.53878 * 110.03240 * 180.02562 * 19 3 2 24 24 H 1.09007 * 109.46535 * 305.03216 * 1 2 3 25 25 H 1.09001 * 109.47308 * 65.03065 * 1 2 3 26 26 H 1.08998 * 109.47200 * 185.03356 * 1 2 3 27 27 H 1.09002 * 109.46569 * 240.00320 * 2 1 3 28 28 H 1.08992 * 109.47172 * 120.00764 * 2 1 3 29 29 H 1.00897 * 111.00405 * 133.14605 * 5 3 2 30 30 H 1.09004 * 109.47168 * 295.61400 * 6 5 3 31 31 H 1.08994 * 109.47289 * 55.61356 * 6 5 3 32 32 H 0.97001 * 119.99939 * 359.97438 * 9 7 6 33 33 H 1.08996 * 109.46913 * 300.00017 * 10 9 7 34 34 H 1.09004 * 109.46885 * 60.00094 * 10 9 7 35 35 H 0.96993 * 120.00177 * 180.02562 * 14 13 11 36 36 H 1.09001 * 110.01758 * 58.61447 * 19 3 2 37 37 H 1.08997 * 110.48487 * 335.78642 * 20 19 3 38 38 H 1.08997 * 110.48403 * 98.43032 * 20 19 3 39 39 H 1.08993 * 110.75683 * 279.63094 * 21 20 19 40 40 H 1.08995 * 110.74817 * 156.25474 * 21 20 19 41 41 H 1.08994 * 110.48942 * 203.37651 * 22 21 20 42 42 H 1.09004 * 110.60292 * 80.78789 * 22 21 20 43 43 H 1.09003 * 110.03556 * 238.57618 * 23 19 3 44 44 H 1.09006 * 110.03086 * 359.95281 * 23 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5996 1.9836 -0.8375 5 7 1.6601 2.0961 1.2595 6 6 0.5140 2.9935 1.0621 7 6 0.0860 3.5615 2.3907 8 8 0.6772 3.2491 3.4025 9 7 -0.9545 4.4159 2.4546 10 6 -1.3709 4.9676 3.7463 11 6 -2.5467 5.8883 3.5437 12 1 -2.9442 6.0463 2.5520 13 6 -3.1154 6.5281 4.6245 14 7 -2.6317 6.3353 5.8321 15 14 -4.5733 7.6688 4.3735 16 1 -4.9230 7.7150 2.9310 17 1 -5.7351 7.1653 5.1491 18 1 -4.2201 9.0336 4.8406 19 6 3.5640 1.4446 -0.1362 20 6 4.2042 0.7433 1.0796 21 6 5.4883 1.5634 1.3584 22 6 5.0332 3.0170 1.0774 23 6 4.0911 2.8902 -0.1370 24 1 -0.3633 0.5900 0.8416 25 1 -0.3634 0.4338 -0.9316 26 1 -0.3633 -1.0237 0.0902 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8898 29 1 2.4425 2.5915 1.6602 30 1 0.7998 3.8065 0.3945 31 1 -0.3127 2.4358 0.6221 32 1 -1.4276 4.6654 1.6454 33 1 -1.6565 4.1545 4.4136 34 1 -0.5445 5.5257 4.1864 35 1 -3.0321 6.7852 6.5925 36 1 3.8570 0.9395 -1.0566 37 1 3.5337 0.7805 1.9382 38 1 4.4562 -0.2887 0.8356 39 1 6.2886 1.2710 0.6788 40 1 5.8008 1.4504 2.3965 41 1 5.8900 3.6443 0.8319 42 1 4.4971 3.4237 1.9350 43 1 4.6406 3.0869 -1.0576 44 1 3.2611 3.5903 -0.0412 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382767879.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:09 Heat of formation + Delta-G solvation = -87.021953 kcal Electronic energy + Delta-G solvation = -21029.413734 eV Core-core repulsion = 17979.343683 eV Total energy + Delta-G solvation = -3050.070051 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.82447 -39.87213 -36.56231 -36.05067 -34.33753 -33.28071 -30.77034 -29.56417 -29.49778 -27.12680 -25.22411 -24.12765 -22.38615 -21.39231 -21.15953 -20.12541 -18.90806 -17.76147 -17.27113 -17.09631 -16.66717 -16.14117 -16.09907 -15.67909 -15.07801 -14.81188 -14.25853 -14.16695 -14.15546 -13.94240 -13.72988 -13.65380 -13.10218 -13.02503 -12.87100 -12.73638 -12.26023 -12.21835 -11.99330 -11.86449 -11.72059 -11.48843 -11.46103 -11.42540 -11.38735 -11.19383 -10.81694 -10.64230 -9.81307 -9.25532 -8.29399 -6.46166 1.42883 1.44160 1.57632 1.80974 2.30081 2.51930 3.05493 3.34700 3.64548 3.71716 3.86588 3.99714 4.18664 4.31399 4.33484 4.41892 4.42573 4.58061 4.61434 4.71159 4.76001 4.82360 4.87992 4.91374 5.02624 5.08304 5.11198 5.13364 5.22258 5.24195 5.25330 5.36547 5.41578 5.47657 5.49518 5.56362 5.59670 5.70328 5.85125 6.13188 6.44718 6.65561 6.95878 7.23664 7.53677 8.83128 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.027007 B = 0.003653 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.528079 B = 7663.898491 C = 8182.057473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.106 4.106 3 C 0.093 3.907 4 H 0.065 0.935 5 N -0.679 5.679 6 C 0.052 3.948 7 C 0.492 3.508 8 O -0.590 6.590 9 N -0.710 5.710 10 C 0.267 3.733 11 C -0.555 4.555 12 H 0.084 0.916 13 C 0.003 3.997 14 N -0.932 5.932 15 Si 0.985 3.015 16 H -0.252 1.252 17 H -0.279 1.279 18 H -0.279 1.279 19 C -0.095 4.095 20 C -0.121 4.121 21 C -0.123 4.123 22 C -0.130 4.130 23 C -0.124 4.124 24 H 0.042 0.958 25 H 0.060 0.940 26 H 0.052 0.948 27 H 0.079 0.921 28 H 0.055 0.945 29 H 0.345 0.655 30 H 0.079 0.921 31 H 0.119 0.881 32 H 0.407 0.593 33 H -0.015 1.015 34 H -0.014 1.014 35 H 0.268 0.732 36 H 0.096 0.904 37 H 0.058 0.942 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.058 0.942 41 H 0.072 0.928 42 H 0.045 0.955 43 H 0.080 0.920 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.752 -9.782 -18.257 23.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.144 4.144 3 C -0.016 4.016 4 H 0.083 0.917 5 N -0.314 5.314 6 C -0.080 4.080 7 C 0.279 3.721 8 O -0.471 6.471 9 N -0.361 5.361 10 C 0.144 3.856 11 C -0.593 4.593 12 H 0.102 0.898 13 C -0.197 4.197 14 N -0.570 5.570 15 Si 0.809 3.191 16 H -0.176 1.176 17 H -0.205 1.205 18 H -0.204 1.204 19 C -0.114 4.114 20 C -0.158 4.158 21 C -0.160 4.160 22 C -0.168 4.168 23 C -0.162 4.162 24 H 0.061 0.939 25 H 0.079 0.921 26 H 0.071 0.929 27 H 0.097 0.903 28 H 0.073 0.927 29 H 0.166 0.834 30 H 0.096 0.904 31 H 0.137 0.863 32 H 0.243 0.757 33 H 0.003 0.997 34 H 0.004 0.996 35 H 0.077 0.923 36 H 0.115 0.885 37 H 0.077 0.923 38 H 0.092 0.908 39 H 0.097 0.903 40 H 0.077 0.923 41 H 0.091 0.909 42 H 0.064 0.936 43 H 0.098 0.902 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 11.758 -10.471 -17.150 23.281 hybrid contribution -0.512 1.489 0.093 1.578 sum 11.246 -8.981 -17.057 22.318 Atomic orbital electron populations 1.21807 0.96457 1.01440 1.01336 1.21538 0.95608 0.95420 1.01864 1.21727 0.94505 0.95638 0.89715 0.91743 1.60183 1.09200 1.34760 1.27214 1.21956 0.97222 0.96825 0.91976 1.21483 0.79889 0.78473 0.92260 1.90634 1.56279 1.61160 1.39021 1.46193 1.32665 1.45758 1.11486 1.18511 0.93825 0.91943 0.81307 1.21654 1.14937 1.27346 0.95318 0.89773 1.26082 1.00771 0.98467 0.94352 1.70148 1.42912 1.44016 0.99971 0.85102 0.77389 0.77443 0.79215 1.17561 1.20468 1.20436 1.22117 0.93505 0.95980 0.99803 1.22421 0.96396 0.99162 0.97853 1.22490 0.97762 0.94514 1.01255 1.22390 0.99213 0.97598 0.97614 1.22246 0.98753 0.96168 0.99014 0.93920 0.92119 0.92873 0.90288 0.92659 0.83409 0.90369 0.86323 0.75710 0.99742 0.99627 0.92268 0.88545 0.92298 0.90847 0.90284 0.92274 0.90912 0.93600 0.90157 0.93138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.02 9.20 71.98 0.66 -2.35 16 2 C -0.11 -1.94 5.31 30.59 0.16 -1.78 16 3 C 0.09 1.76 1.76 44.91 0.08 1.84 16 4 H 0.06 1.09 7.63 -2.38 -0.02 1.07 16 5 N -0.68 -18.08 4.59 -495.57 -2.27 -20.36 16 6 C 0.05 1.43 5.45 85.56 0.47 1.90 16 7 C 0.49 20.10 7.88 87.66 0.69 20.79 16 8 O -0.59 -30.13 16.30 -3.03 -0.05 -30.18 16 9 N -0.71 -30.49 5.55 -466.78 -2.59 -33.08 16 10 C 0.27 14.97 5.43 85.63 0.46 15.43 16 11 C -0.55 -30.51 9.28 25.60 0.24 -30.27 16 12 H 0.08 4.17 7.60 -2.91 -0.02 4.15 16 13 C 0.00 0.15 5.46 84.65 0.46 0.61 16 14 N -0.93 -56.90 13.29 21.45 0.28 -56.61 16 15 Si 0.99 42.58 29.54 68.60 2.03 44.61 16 16 H -0.25 -10.02 7.11 99.48 0.71 -9.31 16 17 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 18 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 19 C -0.10 -1.55 2.76 -10.07 -0.03 -1.57 16 20 C -0.12 -2.23 5.07 31.67 0.16 -2.07 16 21 C -0.12 -2.13 6.91 31.89 0.22 -1.91 16 22 C -0.13 -2.46 6.47 31.65 0.20 -2.26 16 23 C -0.12 -2.10 5.72 31.30 0.18 -1.92 16 24 H 0.04 1.06 5.98 -2.38 -0.01 1.04 16 25 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.05 1.18 7.45 -2.39 -0.02 1.17 16 29 H 0.35 10.05 5.47 -89.70 -0.49 9.56 16 30 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.12 2.82 6.01 -2.39 -0.01 2.81 16 32 H 0.41 14.32 8.32 -92.71 -0.77 13.55 16 33 H -0.02 -0.98 8.14 -2.39 -0.02 -0.99 16 34 H -0.01 -0.90 8.14 -2.39 -0.02 -0.92 16 35 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 36 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.06 1.43 6.72 -2.39 -0.02 1.42 16 38 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.05 1.08 7.71 -2.39 -0.02 1.06 16 43 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.05 0.96 7.16 -2.38 -0.02 0.95 16 Total: -1.00 -70.96 343.31 1.08 -69.89 By element: Atomic # 1 Polarization: 29.59 SS G_CDS: -0.28 Total: 29.31 kcal Atomic # 6 Polarization: -7.52 SS G_CDS: 3.96 Total: -3.56 kcal Atomic # 7 Polarization: -105.48 SS G_CDS: -4.58 Total: -110.05 kcal Atomic # 8 Polarization: -30.13 SS G_CDS: -0.05 Total: -30.18 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.61 kcal Total: -70.96 1.08 -69.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382767879.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.136 kcal (2) G-P(sol) polarization free energy of solvation -70.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds