Wall clock time and date at job start Mon Mar 30 2020 05:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47289 * 2 1 4 4 H 1.09004 * 109.47123 * 177.49797 * 3 2 1 5 5 N 1.46902 * 109.47037 * 57.49646 * 3 2 1 6 6 C 1.46903 * 110.99613 * 85.96763 * 5 3 2 7 7 C 1.50704 * 109.46626 * 185.26171 * 6 5 3 8 8 O 1.21275 * 120.00036 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99726 * 180.02562 * 7 6 5 10 10 C 1.46505 * 119.99694 * 179.97438 * 9 7 6 11 11 C 1.50702 * 109.46835 * 179.97438 * 10 9 7 12 12 H 1.08004 * 120.00151 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99653 * 179.97438 * 11 10 9 14 14 N 1.31501 * 120.00236 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 119.99630 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47365 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.46991 * 120.00275 * 15 13 11 18 18 H 1.48500 * 109.47160 * 240.00478 * 15 13 11 19 19 C 1.52995 * 109.46991 * 297.49710 * 3 2 1 20 20 C 1.54271 * 110.03470 * 297.16500 * 19 3 2 21 21 C 1.54883 * 104.19961 * 217.10565 * 20 19 3 22 22 C 1.54897 * 102.74807 * 37.94141 * 21 20 19 23 23 C 1.53877 * 110.03241 * 180.02562 * 19 3 2 24 24 H 1.08996 * 109.47391 * 65.41087 * 1 2 3 25 25 H 1.09001 * 109.46736 * 305.41613 * 1 2 3 26 26 H 1.09001 * 109.47339 * 185.41992 * 1 2 3 27 27 H 1.09004 * 109.47118 * 119.99928 * 2 1 3 28 28 H 1.09004 * 109.46735 * 239.99680 * 2 1 3 29 29 H 1.00901 * 110.99419 * 209.91263 * 5 3 2 30 30 H 1.08994 * 109.46864 * 305.25336 * 6 5 3 31 31 H 1.08994 * 109.47486 * 65.26023 * 6 5 3 32 32 H 0.96997 * 120.00266 * 359.97438 * 9 7 6 33 33 H 1.09004 * 109.46928 * 299.99359 * 10 9 7 34 34 H 1.08994 * 109.47138 * 59.99914 * 10 9 7 35 35 H 0.97007 * 120.00368 * 179.97438 * 14 13 11 36 36 H 1.09002 * 110.02214 * 58.60793 * 19 3 2 37 37 H 1.08998 * 110.48247 * 335.79015 * 20 19 3 38 38 H 1.09005 * 110.48104 * 98.42709 * 20 19 3 39 39 H 1.08995 * 110.75968 * 279.62927 * 21 20 19 40 40 H 1.08996 * 110.91479 * 156.33128 * 21 20 19 41 41 H 1.08998 * 110.48577 * 203.37748 * 22 21 20 42 42 H 1.09002 * 110.59235 * 80.79203 * 22 21 20 43 43 H 1.09005 * 110.03192 * 238.56712 * 23 19 3 44 44 H 1.09001 * 110.03267 * 359.97438 * 23 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1291 1.4428 0.0449 5 7 1.5016 2.1522 1.1681 6 6 2.3499 1.9419 2.3489 7 6 1.7007 2.5748 3.5527 8 8 0.6366 3.1452 3.4382 9 7 2.3033 2.5077 4.7564 10 6 1.6725 3.1234 5.9266 11 6 2.5427 2.9076 7.1380 12 1 3.4727 2.3664 7.0454 13 6 2.1519 3.4021 8.3643 14 7 1.0198 4.0615 8.4770 15 14 3.2301 3.1340 9.8660 16 1 4.4408 2.3677 9.4758 17 1 3.6357 4.4485 10.4252 18 1 2.4712 2.3730 10.8908 19 6 1.5821 2.1453 -1.2795 20 6 2.1984 1.4525 -2.5125 21 6 2.5103 2.6162 -3.4858 22 6 2.9947 3.7377 -2.5335 23 6 2.0890 3.5981 -1.2932 24 1 -0.3634 0.4276 -0.9344 25 1 -0.3633 0.5956 0.8375 26 1 -0.3634 -1.0231 0.0971 27 1 1.8933 -0.5138 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.3901 3.1360 0.9735 30 1 2.4726 0.8729 2.5223 31 1 3.3258 2.3972 2.1809 32 1 3.1546 2.0518 4.8479 33 1 1.5498 4.1925 5.7528 34 1 0.6966 2.6682 6.0949 35 1 0.7446 4.4091 9.3398 36 1 0.4943 2.1284 -1.3457 37 1 3.1140 0.9289 -2.2379 38 1 1.4827 0.7625 -2.9597 39 1 1.6116 2.9245 -4.0200 40 1 3.2975 2.3373 -4.1862 41 1 2.8604 4.7155 -2.9962 42 1 4.0394 3.5854 -2.2620 43 1 1.2472 4.2866 -1.3667 44 1 2.6609 3.8026 -0.3881 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382767880.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:12 Heat of formation + Delta-G solvation = -67.073728 kcal Electronic energy + Delta-G solvation = -20715.597991 eV Core-core repulsion = 17666.392960 eV Total energy + Delta-G solvation = -3049.205031 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.59179 -38.50831 -35.78982 -34.11183 -32.51543 -32.22931 -29.46362 -28.78436 -27.68661 -25.78119 -24.56162 -22.40780 -21.16006 -20.71097 -19.63557 -19.09726 -17.28027 -16.49819 -16.00220 -15.53591 -15.33009 -15.01582 -14.50522 -14.27165 -14.01693 -13.58742 -13.43815 -13.31596 -12.97121 -12.62106 -12.29939 -11.92576 -11.65904 -11.63218 -11.34979 -11.29625 -11.24349 -11.09689 -10.95270 -10.88711 -10.84891 -10.81377 -10.59426 -10.30589 -10.20395 -9.36231 -8.97893 -8.72188 -8.25877 -7.82737 -6.15467 -4.22198 3.23933 3.30901 3.33986 3.44850 3.82870 4.29969 4.38517 4.39689 4.48145 4.67736 4.92557 5.05223 5.20603 5.22336 5.22736 5.36883 5.41251 5.42876 5.46728 5.48471 5.54934 5.55526 5.65692 5.66540 5.70987 5.78686 5.87401 5.94647 6.02237 6.08227 6.15416 6.25804 6.28929 6.59503 7.04203 7.35201 7.47669 7.49941 7.54991 7.70129 7.99116 8.67552 8.81520 9.16885 9.44774 10.94804 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.034345 B = 0.003171 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.055713 B = 8828.159277 C = 9096.591660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.111 4.111 3 C 0.094 3.906 4 H 0.042 0.958 5 N -0.665 5.665 6 C 0.040 3.960 7 C 0.497 3.503 8 O -0.542 6.542 9 N -0.716 5.716 10 C 0.251 3.749 11 C -0.542 4.542 12 H 0.063 0.937 13 C 0.063 3.937 14 N -0.885 5.885 15 Si 0.903 3.097 16 H -0.272 1.272 17 H -0.282 1.282 18 H -0.282 1.282 19 C -0.094 4.094 20 C -0.115 4.115 21 C -0.126 4.126 22 C -0.124 4.124 23 C -0.127 4.127 24 H 0.046 0.954 25 H 0.076 0.924 26 H 0.041 0.959 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.350 0.650 30 H 0.094 0.906 31 H 0.051 0.949 32 H 0.389 0.611 33 H 0.025 0.975 34 H 0.026 0.974 35 H 0.265 0.735 36 H 0.085 0.915 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.067 0.933 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.065 -5.780 -22.152 23.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.150 4.150 3 C -0.016 4.016 4 H 0.060 0.940 5 N -0.299 5.299 6 C -0.092 4.092 7 C 0.281 3.719 8 O -0.420 6.420 9 N -0.366 5.366 10 C 0.130 3.870 11 C -0.581 4.581 12 H 0.081 0.919 13 C -0.141 4.141 14 N -0.523 5.523 15 Si 0.731 3.269 16 H -0.196 1.196 17 H -0.208 1.208 18 H -0.208 1.208 19 C -0.113 4.113 20 C -0.153 4.153 21 C -0.163 4.163 22 C -0.161 4.161 23 C -0.165 4.165 24 H 0.065 0.935 25 H 0.095 0.905 26 H 0.060 0.940 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.171 0.829 30 H 0.112 0.888 31 H 0.069 0.931 32 H 0.221 0.779 33 H 0.043 0.957 34 H 0.044 0.956 35 H 0.075 0.925 36 H 0.103 0.897 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.086 0.914 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.721 -5.747 -21.889 22.935 hybrid contribution 1.746 0.229 0.845 1.953 sum 5.467 -5.519 -21.044 22.432 Atomic orbital electron populations 1.21689 0.95176 1.00804 1.02620 1.21517 0.97302 0.95153 1.00982 1.21645 0.96270 0.94483 0.89166 0.94011 1.60101 1.49919 1.17401 1.02461 1.21871 0.94609 1.01924 0.90844 1.20376 0.85931 0.81132 0.84504 1.90657 1.21982 1.43967 1.85383 1.46453 1.24443 1.56610 1.09051 1.19076 0.93770 0.93538 0.80613 1.21274 1.06785 1.37082 0.92920 0.91895 1.24958 0.95278 0.94746 0.99092 1.69983 1.21263 1.35906 1.25126 0.86368 0.80258 0.77990 0.82329 1.19649 1.20819 1.20787 1.21980 1.01397 0.94102 0.93837 1.22389 1.00539 0.97381 0.94997 1.22496 1.00784 0.95635 0.97392 1.22336 0.99304 0.98671 0.95818 1.22266 0.99465 0.96623 0.98158 0.93451 0.90527 0.93994 0.92383 0.92271 0.82907 0.88773 0.93115 0.77882 0.95671 0.95581 0.92515 0.89714 0.91565 0.91619 0.91588 0.91819 0.91860 0.91860 0.91410 0.91984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.38 37.16 0.35 -1.29 16 2 C -0.11 -1.15 5.62 -26.73 -0.15 -1.30 16 3 C 0.09 1.00 1.57 -67.72 -0.11 0.89 16 4 H 0.04 0.43 7.82 -51.93 -0.41 0.03 16 5 N -0.67 -9.07 4.84 -107.99 -0.52 -9.59 16 6 C 0.04 0.58 5.94 -4.97 -0.03 0.55 16 7 C 0.50 9.98 7.88 -10.98 -0.09 9.90 16 8 O -0.54 -13.22 16.32 5.56 0.09 -13.13 16 9 N -0.72 -15.21 5.55 -61.47 -0.34 -15.55 16 10 C 0.25 6.74 5.43 -5.19 -0.03 6.71 16 11 C -0.54 -14.84 9.28 -34.44 -0.32 -15.16 16 12 H 0.06 1.61 7.60 -52.48 -0.40 1.21 16 13 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 14 N -0.89 -26.31 13.28 55.43 0.74 -25.58 16 15 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 16 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 17 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 19 C -0.09 -0.88 2.36 -89.50 -0.21 -1.09 16 20 C -0.12 -0.90 5.27 -25.07 -0.13 -1.03 16 21 C -0.13 -0.92 6.91 -24.74 -0.17 -1.09 16 22 C -0.12 -0.99 6.83 -25.10 -0.17 -1.16 16 23 C -0.13 -1.19 5.58 -25.64 -0.14 -1.33 16 24 H 0.05 0.49 6.75 -51.93 -0.35 0.13 16 25 H 0.08 1.07 7.36 -51.93 -0.38 0.69 16 26 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.63 7.50 -51.93 -0.39 0.24 16 28 H 0.06 0.52 7.20 -51.93 -0.37 0.15 16 29 H 0.35 4.98 6.59 -39.29 -0.26 4.72 16 30 H 0.09 1.22 7.44 -51.93 -0.39 0.84 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.39 7.05 8.32 -40.82 -0.34 6.71 16 33 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 36 H 0.08 0.87 6.58 -51.93 -0.34 0.53 16 37 H 0.07 0.51 7.76 -51.93 -0.40 0.11 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.06 0.63 6.85 -51.93 -0.36 0.27 16 LS Contribution 345.84 15.07 5.21 5.21 Total: -1.00 -31.44 345.84 -8.89 -40.33 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: -7.75 Total: 6.11 kcal Atomic # 6 Polarization: -2.45 SS G_CDS: -1.30 Total: -3.75 kcal Atomic # 7 Polarization: -50.59 SS G_CDS: -0.13 Total: -50.71 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: 0.09 Total: -13.13 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.44 -8.89 -40.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382767880.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.743 kcal (2) G-P(sol) polarization free energy of solvation -31.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds