Wall clock time and date at job start Mon Mar 30 2020 05:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46747 * 2 1 4 4 C 1.53002 * 109.47127 * 119.99449 * 2 1 3 5 5 N 1.46508 * 109.46666 * 62.49721 * 4 2 1 6 6 C 1.46491 * 120.00015 * 76.77177 * 5 4 2 7 7 C 1.50701 * 109.47324 * 89.99454 * 6 5 4 8 8 H 1.07995 * 120.00010 * 0.02562 * 7 6 5 9 9 C 1.37882 * 120.00029 * 179.97438 * 7 6 5 10 10 N 1.31513 * 119.99795 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99895 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.46873 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47281 * 119.99998 * 11 9 7 14 14 H 1.48497 * 109.46679 * 240.00354 * 11 9 7 15 15 C 1.34778 * 119.99886 * 257.04103 * 5 4 2 16 16 O 1.21281 * 120.00153 * 186.25494 * 15 5 4 17 17 C 1.50701 * 119.99847 * 6.26479 * 15 5 4 18 18 H 1.09000 * 109.47118 * 348.68432 * 17 15 5 19 19 N 1.46901 * 109.46714 * 228.69044 * 17 15 5 20 20 C 1.53002 * 109.47336 * 108.69032 * 17 15 5 21 21 C 1.53002 * 109.46658 * 189.97741 * 20 17 15 22 22 C 1.53004 * 117.49685 * 243.61790 * 21 20 17 23 23 C 1.53001 * 59.99952 * 252.51531 * 22 21 20 24 24 H 1.08997 * 109.47492 * 179.57283 * 1 2 3 25 25 H 1.09006 * 109.47248 * 299.57576 * 1 2 3 26 26 H 1.09000 * 109.47329 * 59.57355 * 1 2 3 27 27 H 1.08997 * 109.46875 * 239.99673 * 2 1 3 28 28 H 1.09004 * 109.46690 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.46949 * 299.99718 * 3 2 1 30 30 H 1.08997 * 109.47699 * 60.00178 * 3 2 1 31 31 H 1.08996 * 109.47172 * 302.50058 * 4 2 1 32 32 H 1.08996 * 109.47214 * 182.49483 * 4 2 1 33 33 H 1.09003 * 109.47458 * 210.00163 * 6 5 4 34 34 H 1.09008 * 109.47526 * 329.99850 * 6 5 4 35 35 H 0.97000 * 119.99823 * 179.97438 * 10 9 7 36 36 H 1.00897 * 111.00380 * 176.04410 * 19 17 15 37 37 H 1.00905 * 111.00205 * 299.99631 * 19 17 15 38 38 H 1.08998 * 109.47054 * 309.97867 * 20 17 15 39 39 H 1.08997 * 109.46877 * 69.97980 * 20 17 15 40 40 H 1.08995 * 115.55362 * 29.33222 * 21 20 17 41 41 H 1.09006 * 117.49846 * 0.02562 * 22 21 20 42 42 H 1.08996 * 117.49789 * 145.02725 * 22 21 20 43 43 H 1.08993 * 117.49900 * 252.50768 * 23 22 21 44 44 H 1.09005 * 117.51541 * 107.48471 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 1.6013 -2.1187 1.2196 6 6 2.2815 -3.0815 0.3500 7 6 3.4220 -3.7187 1.1011 8 1 3.6202 -3.4351 2.1241 9 6 4.2119 -4.6645 0.4825 10 7 3.9703 -5.0102 -0.7631 11 14 5.6253 -5.4548 1.4139 12 1 5.6855 -4.8967 2.7887 13 1 5.4126 -6.9228 1.4839 14 1 6.9016 -5.1725 0.7092 15 6 0.5686 -2.5173 1.9884 16 8 0.2775 -3.6930 2.0510 17 6 -0.2246 -1.5020 2.7702 18 1 0.2947 -0.5439 2.7531 19 7 -0.3675 -1.9568 4.1597 20 6 -1.6100 -1.3426 2.1406 21 6 -2.3222 -0.1447 2.7721 22 6 -3.6019 -0.4207 3.5641 23 6 -3.6812 0.2545 2.1934 24 1 -0.3634 -1.0276 -0.0077 25 1 -0.3634 0.5072 0.8938 26 1 -0.3634 0.5204 -0.8861 27 1 1.8933 -0.5139 -0.8899 28 1 3.1299 1.4425 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9564 0.8899 31 1 1.6405 -0.2338 2.1387 32 1 3.1290 -0.6826 1.2720 33 1 1.5758 -3.8519 0.0389 34 1 2.6683 -2.5668 -0.5296 35 1 4.5262 -5.6753 -1.1984 36 1 -0.8400 -1.2637 4.7203 37 1 -0.8464 -2.8440 4.2024 38 1 -1.5051 -1.1791 1.0681 39 1 -2.1944 -2.2460 2.3150 40 1 -1.6723 0.6547 3.1278 41 1 -3.9361 -1.4558 3.6357 42 1 -3.7939 0.1971 4.4413 43 1 -3.9254 1.3164 2.1689 44 1 -4.0677 -0.3361 1.3628 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000383864783.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:15 Heat of formation + Delta-G solvation = -19.734724 kcal Electronic energy + Delta-G solvation = -21933.902641 eV Core-core repulsion = 18886.750383 eV Total energy + Delta-G solvation = -3047.152258 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.72061 -37.67106 -36.32194 -34.35747 -33.43218 -32.19381 -29.04880 -27.72639 -26.78727 -25.60121 -24.33542 -22.54100 -22.06645 -20.56206 -20.12485 -18.15572 -17.11281 -16.41862 -15.92523 -15.45088 -14.90934 -14.61600 -14.28782 -14.24154 -14.03607 -13.78028 -13.57787 -12.91315 -12.63918 -12.27801 -12.16200 -11.97429 -11.79166 -11.70572 -11.44628 -11.29334 -11.13797 -10.90628 -10.83935 -10.69631 -10.53794 -10.48821 -10.27309 -10.07986 -9.93932 -9.52087 -8.86277 -8.39902 -8.37411 -7.56730 -5.98613 -4.01986 3.34248 3.39475 3.42348 3.48168 3.62906 3.91875 4.49932 4.56776 4.73581 4.75243 4.95321 5.01676 5.04636 5.16340 5.18484 5.30079 5.35861 5.45450 5.49091 5.56752 5.73416 5.74550 5.76736 5.84788 5.87362 5.92208 5.94311 5.99076 6.11358 6.18909 6.28252 6.33173 6.53159 6.60531 7.08398 7.28104 7.47551 7.59637 7.65100 7.98765 8.30713 8.49733 8.98139 9.17339 9.62851 11.09547 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.021238 B = 0.005533 C = 0.004815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.102684 B = 5059.224865 C = 5813.702391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.117 4.117 3 C -0.142 4.142 4 C 0.112 3.888 5 N -0.592 5.592 6 C 0.248 3.752 7 C -0.519 4.519 8 H 0.058 0.942 9 C 0.060 3.940 10 N -0.897 5.897 11 Si 0.897 3.103 12 H -0.273 1.273 13 H -0.283 1.283 14 H -0.284 1.284 15 C 0.517 3.483 16 O -0.540 6.540 17 C 0.071 3.929 18 H 0.099 0.901 19 N -0.828 5.828 20 C -0.131 4.131 21 C -0.148 4.148 22 C -0.183 4.183 23 C -0.179 4.179 24 H 0.061 0.939 25 H 0.055 0.945 26 H 0.050 0.950 27 H 0.078 0.922 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.039 0.961 34 H 0.032 0.968 35 H 0.261 0.739 36 H 0.340 0.660 37 H 0.349 0.651 38 H 0.090 0.910 39 H 0.069 0.931 40 H 0.104 0.896 41 H 0.093 0.907 42 H 0.092 0.908 43 H 0.092 0.908 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.441 14.823 4.476 19.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.137 4.137 3 C -0.200 4.200 4 C -0.012 4.012 5 N -0.323 5.323 6 C 0.128 3.872 7 C -0.558 4.558 8 H 0.077 0.923 9 C -0.142 4.142 10 N -0.537 5.537 11 Si 0.725 3.275 12 H -0.198 1.198 13 H -0.210 1.210 14 H -0.211 1.211 15 C 0.302 3.698 16 O -0.417 6.417 17 C -0.044 4.044 18 H 0.116 0.884 19 N -0.359 5.359 20 C -0.170 4.170 21 C -0.167 4.167 22 C -0.220 4.220 23 C -0.216 4.216 24 H 0.080 0.920 25 H 0.074 0.926 26 H 0.069 0.931 27 H 0.096 0.904 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.090 0.910 32 H 0.096 0.904 33 H 0.057 0.943 34 H 0.050 0.950 35 H 0.071 0.929 36 H 0.153 0.847 37 H 0.163 0.837 38 H 0.108 0.892 39 H 0.088 0.912 40 H 0.123 0.877 41 H 0.111 0.889 42 H 0.110 0.890 43 H 0.111 0.889 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -10.701 14.037 4.370 18.183 hybrid contribution -0.179 -0.350 0.207 0.444 sum -10.879 13.687 4.577 18.074 Atomic orbital electron populations 1.22173 0.95641 1.01765 1.01232 1.21561 0.95956 0.95992 1.00193 1.21754 1.01199 0.95724 1.01294 1.21629 1.00531 0.82270 0.96752 1.48153 1.31581 1.09560 1.42957 1.19233 0.92140 0.87138 0.88641 1.21489 1.12858 1.22284 0.99207 0.92342 1.24929 0.97875 0.96431 0.94946 1.69944 1.39675 1.32569 1.11510 0.86457 0.81775 0.79282 0.80017 1.19751 1.20953 1.21067 1.20086 0.80870 0.88904 0.79913 1.90651 1.69022 1.18316 1.63661 1.21645 0.94652 0.98781 0.89277 0.88377 1.58646 1.60463 1.08202 1.08609 1.22232 0.95853 0.96764 1.02142 1.22321 0.90223 1.00261 1.03850 1.23060 1.02027 1.01799 0.95142 1.22932 1.00601 1.00963 0.97098 0.91981 0.92582 0.93121 0.90359 0.92476 0.92860 0.92975 0.91004 0.90443 0.94259 0.95019 0.92906 0.84710 0.83721 0.89231 0.91233 0.87747 0.88878 0.88954 0.88924 0.88843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 6.82 37.16 0.25 -1.65 16 2 C -0.12 -1.64 3.04 -90.62 -0.28 -1.91 16 3 C -0.14 -1.56 9.19 37.16 0.34 -1.22 16 4 C 0.11 1.85 4.88 -4.04 -0.02 1.83 16 5 N -0.59 -12.55 2.07 -175.06 -0.36 -12.91 16 6 C 0.25 6.53 5.07 -5.20 -0.03 6.50 16 7 C -0.52 -15.07 9.39 -34.44 -0.32 -15.40 16 8 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 9 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 10 N -0.90 -27.03 13.29 55.43 0.74 -26.29 16 11 Si 0.90 22.42 29.54 -169.99 -5.02 17.40 16 12 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 13 H -0.28 -7.09 7.11 56.52 0.40 -6.68 16 14 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 15 C 0.52 10.84 5.79 -10.98 -0.06 10.77 16 16 O -0.54 -13.82 16.35 5.56 0.09 -13.73 16 17 C 0.07 1.07 2.10 -68.86 -0.14 0.93 16 18 H 0.10 1.34 4.56 -51.93 -0.24 1.10 16 19 N -0.83 -11.91 9.19 -5.65 -0.05 -11.96 16 20 C -0.13 -1.66 4.19 -26.73 -0.11 -1.77 16 21 C -0.15 -1.44 4.84 -90.62 -0.44 -1.88 16 22 C -0.18 -1.60 10.18 -26.73 -0.27 -1.87 16 23 C -0.18 -1.57 10.25 -26.73 -0.27 -1.85 16 24 H 0.06 0.92 5.01 -51.93 -0.26 0.66 16 25 H 0.06 0.62 6.33 -51.93 -0.33 0.29 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.08 1.26 7.49 -51.93 -0.39 0.87 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 1.02 5.36 -51.93 -0.28 0.75 16 32 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 33 H 0.04 1.17 7.51 -51.93 -0.39 0.78 16 34 H 0.03 0.84 7.41 -51.92 -0.38 0.46 16 35 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 36 H 0.34 3.80 8.48 -39.29 -0.33 3.47 16 37 H 0.35 5.28 8.68 -39.29 -0.34 4.94 16 38 H 0.09 1.19 4.32 -51.93 -0.22 0.96 16 39 H 0.07 0.97 7.87 -51.93 -0.41 0.56 16 40 H 0.10 0.94 8.01 -51.93 -0.42 0.53 16 41 H 0.09 0.85 8.03 -51.93 -0.42 0.43 16 42 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 343.29 15.07 5.17 5.17 Total: -1.00 -32.88 343.29 -8.22 -41.10 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -7.34 Total: 7.09 kcal Atomic # 6 Polarization: -4.42 SS G_CDS: -1.45 Total: -5.87 kcal Atomic # 7 Polarization: -51.49 SS G_CDS: 0.32 Total: -51.17 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: 0.09 Total: -13.73 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.88 -8.22 -41.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383864783.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.370 kcal (2) G-P(sol) polarization free energy of solvation -32.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds