Wall clock time and date at job start Mon Mar 30 2020 05:36:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.47394 * 2 1 4 4 H 1.09007 * 110.06155 * 54.75099 * 3 2 1 5 5 C 1.53992 * 109.91851 * 175.95219 * 3 2 1 6 6 H 1.09005 * 110.30907 * 239.49266 * 5 3 2 7 7 C 1.53002 * 110.30977 * 1.66559 * 5 3 2 8 8 C 1.54601 * 105.13556 * 120.58131 * 5 3 2 9 9 C 1.54931 * 102.92191 * 21.95653 * 8 5 3 10 10 N 1.47897 * 109.91841 * 293.54839 * 3 2 1 11 11 C 1.46893 * 111.00491 * 94.79713 * 10 3 2 12 12 C 1.50699 * 109.47329 * 187.27245 * 11 10 3 13 13 O 1.21275 * 120.00067 * 359.97438 * 12 11 10 14 14 N 1.34777 * 120.00130 * 180.02562 * 12 11 10 15 15 C 1.46508 * 119.99739 * 0.02562 * 14 12 11 16 16 C 1.46500 * 120.00124 * 179.97438 * 14 12 11 17 17 C 1.50706 * 109.46953 * 269.99834 * 16 14 12 18 18 H 1.07999 * 120.00193 * 0.02562 * 17 16 14 19 19 C 1.37879 * 119.99398 * 179.97438 * 17 16 14 20 20 N 1.31514 * 120.00338 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99424 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.46845 * 180.02562 * 21 19 17 23 23 H 1.48503 * 109.47399 * 299.99813 * 21 19 17 24 24 H 1.48498 * 109.47295 * 60.00420 * 21 19 17 25 25 H 1.09000 * 109.47733 * 300.00418 * 1 2 3 26 26 H 1.09007 * 109.46916 * 60.00242 * 1 2 3 27 27 H 1.08999 * 109.47400 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47383 * 239.99843 * 2 1 3 29 29 H 1.09007 * 109.46916 * 119.99758 * 2 1 3 30 30 H 1.09000 * 109.47057 * 177.16924 * 7 5 3 31 31 H 1.09003 * 109.46779 * 297.16349 * 7 5 3 32 32 H 1.08993 * 109.47033 * 57.16439 * 7 5 3 33 33 H 1.08996 * 110.71941 * 263.59565 * 8 5 3 34 34 H 1.08999 * 110.72098 * 140.31853 * 8 5 3 35 35 H 1.09004 * 110.66355 * 204.14934 * 9 8 5 36 36 H 1.09000 * 110.81333 * 81.09217 * 9 8 5 37 37 H 1.09005 * 109.46799 * 67.27280 * 11 10 3 38 38 H 1.09007 * 109.47237 * 307.27499 * 11 10 3 39 39 H 1.09000 * 109.46557 * 269.99303 * 15 14 12 40 40 H 1.08991 * 109.47146 * 29.99696 * 15 14 12 41 41 H 1.09005 * 109.46914 * 149.99696 * 15 14 12 42 42 H 1.09000 * 109.47175 * 150.00263 * 16 14 12 43 43 H 1.08992 * 109.46764 * 30.00340 * 16 14 12 44 44 H 0.97000 * 119.99706 * 359.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6075 1.9920 0.8362 5 6 3.5765 1.4557 0.1022 6 1 3.8917 1.9984 0.9934 7 6 4.1191 0.0254 0.1303 8 6 4.0595 2.1879 -1.1709 9 6 2.8159 3.0117 -1.5895 10 7 1.6842 2.1027 -1.2747 11 6 0.4272 2.8519 -1.1467 12 6 0.0050 3.3599 -2.5012 13 8 0.6846 3.1218 -3.4770 14 7 -1.1273 4.0798 -2.6281 15 6 -1.9475 4.3688 -1.4490 16 6 -1.5374 4.5741 -3.9448 17 6 -0.9426 5.9393 -4.1764 18 1 -0.3209 6.3931 -3.4188 19 6 -1.1913 6.6085 -5.3560 20 7 -1.9480 6.0557 -6.2787 21 14 -0.4534 8.3003 -5.6433 22 1 -0.8693 8.8015 -6.9780 23 1 -0.9328 9.2344 -4.5931 24 1 1.0278 8.2104 -5.5873 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8901 30 1 5.2086 0.0505 0.1520 31 1 3.7497 -0.4859 1.0193 32 1 3.7855 -0.5073 -0.7601 33 1 4.3282 1.4729 -1.9484 34 1 4.8987 2.8450 -0.9429 35 1 2.8442 3.2359 -2.6559 36 1 2.7455 3.9300 -1.0066 37 1 0.5739 3.6952 -0.4719 38 1 -0.3470 2.1970 -0.7468 39 1 -2.6830 3.5757 -1.3149 40 1 -1.3091 4.4254 -0.5674 41 1 -2.4606 5.3205 -1.5878 42 1 -2.6247 4.6399 -3.9857 43 1 -1.1856 3.8889 -4.7158 44 1 -2.3308 5.1770 -6.1296 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000384293809.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:01 Heat of formation + Delta-G solvation = -57.669050 kcal Electronic energy + Delta-G solvation = -21742.326422 eV Core-core repulsion = 18693.529208 eV Total energy + Delta-G solvation = -3048.797214 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.25456 -39.90992 -36.75785 -35.04419 -34.51671 -34.09785 -30.41680 -29.41576 -28.18181 -27.14477 -25.87297 -24.77581 -23.67914 -22.07977 -20.35066 -19.94957 -19.03561 -17.81299 -17.59750 -16.87393 -16.48127 -16.01036 -15.78365 -15.58973 -15.06983 -14.67707 -14.41451 -14.29382 -14.03245 -13.85727 -13.62033 -13.56381 -13.50736 -13.24355 -12.92760 -12.69226 -12.51992 -12.48197 -12.40751 -12.04374 -11.97206 -11.72168 -11.58514 -11.25854 -11.24917 -11.20049 -10.63872 -10.57949 -9.47443 -9.35524 -8.71190 -6.47506 1.47053 1.56526 1.75597 1.77995 2.16506 2.52119 3.02419 3.08019 3.57499 3.60597 3.82726 3.95076 4.12024 4.17325 4.21104 4.34387 4.35464 4.39384 4.48919 4.57318 4.63212 4.70537 4.72796 4.77613 4.83436 4.86312 4.92140 4.94403 5.06062 5.13349 5.15916 5.17512 5.32560 5.34323 5.46322 5.53358 5.56330 5.79912 5.88924 6.07295 6.14001 6.42364 6.68671 7.28441 7.43876 8.63130 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.026732 B = 0.004696 C = 0.004258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.183699 B = 5960.604445 C = 6574.523362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.104 4.104 3 C 0.065 3.935 4 H 0.064 0.936 5 C -0.093 4.093 6 H 0.091 0.909 7 C -0.139 4.139 8 C -0.112 4.112 9 C 0.034 3.966 10 N -0.512 5.512 11 C 0.040 3.960 12 C 0.495 3.505 13 O -0.580 6.580 14 N -0.612 5.612 15 C 0.079 3.921 16 C 0.248 3.752 17 C -0.616 4.616 18 H 0.044 0.956 19 C -0.032 4.032 20 N -0.931 5.931 21 Si 1.119 2.881 22 H -0.278 1.278 23 H -0.260 1.260 24 H -0.281 1.281 25 H 0.064 0.936 26 H 0.038 0.962 27 H 0.060 0.940 28 H 0.056 0.944 29 H 0.091 0.909 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.050 0.950 33 H 0.065 0.935 34 H 0.085 0.915 35 H 0.050 0.950 36 H 0.040 0.960 37 H 0.076 0.924 38 H 0.128 0.872 39 H 0.072 0.928 40 H 0.091 0.909 41 H 0.065 0.935 42 H 0.018 0.982 43 H -0.010 1.010 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.761 -9.866 20.329 23.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.142 4.142 3 C -0.042 4.042 4 H 0.082 0.918 5 C -0.112 4.112 6 H 0.109 0.891 7 C -0.196 4.196 8 C -0.150 4.150 9 C -0.094 4.094 10 N -0.237 5.237 11 C -0.091 4.091 12 C 0.284 3.716 13 O -0.459 6.459 14 N -0.344 5.344 15 C -0.063 4.063 16 C 0.126 3.874 17 C -0.655 4.655 18 H 0.062 0.938 19 C -0.230 4.230 20 N -0.568 5.568 21 Si 0.940 3.060 22 H -0.203 1.203 23 H -0.185 1.185 24 H -0.207 1.207 25 H 0.083 0.917 26 H 0.057 0.943 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.109 0.891 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.069 0.931 33 H 0.084 0.916 34 H 0.103 0.897 35 H 0.069 0.931 36 H 0.059 0.941 37 H 0.094 0.906 38 H 0.146 0.854 39 H 0.091 0.909 40 H 0.110 0.890 41 H 0.084 0.916 42 H 0.036 0.964 43 H 0.008 0.992 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 8.076 -9.149 18.341 22.030 hybrid contribution -0.430 -0.527 0.893 1.123 sum 7.646 -9.677 19.234 22.848 Atomic orbital electron populations 1.21929 0.96494 1.01949 1.01205 1.21638 0.95453 0.94701 1.02410 1.22637 0.95832 0.96231 0.89517 0.91778 1.22026 0.93198 0.98072 0.97899 0.89088 1.21893 1.00779 0.94541 1.02359 1.22545 0.96122 0.98614 0.97737 1.23179 0.91485 0.94367 1.00330 1.64356 1.00752 1.27273 1.31272 1.22330 0.95637 0.98850 0.92300 1.21269 0.80356 0.77950 0.92067 1.90617 1.53844 1.59139 1.42285 1.48045 1.24312 1.52242 1.09835 1.21929 0.95686 1.01965 0.86726 1.18835 0.93952 0.93443 0.81198 1.22520 1.34197 1.03425 1.05319 0.93804 1.27394 0.95282 1.08381 0.91920 1.70924 1.32343 1.17467 1.36036 0.82921 0.75530 0.70554 0.77022 1.20309 1.18493 1.20664 0.91667 0.94307 0.92127 0.92500 0.89089 0.92128 0.90770 0.93067 0.91643 0.89683 0.93098 0.94146 0.90599 0.85418 0.90909 0.89026 0.91609 0.96399 0.99226 0.93612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.96 8.85 71.98 0.64 -2.32 16 2 C -0.10 -1.92 4.43 30.59 0.14 -1.78 16 3 C 0.07 1.35 2.61 45.06 0.12 1.47 16 4 H 0.06 1.16 7.78 -2.38 -0.02 1.14 16 5 C -0.09 -1.66 3.59 -9.91 -0.04 -1.69 16 6 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 7 C -0.14 -2.02 7.91 71.98 0.57 -1.45 16 8 C -0.11 -2.58 6.61 31.80 0.21 -2.37 16 9 C 0.03 1.07 5.86 86.65 0.51 1.58 16 10 N -0.51 -15.34 4.43 -862.63 -3.82 -19.16 16 11 C 0.04 1.21 3.32 85.56 0.28 1.49 16 12 C 0.50 21.78 7.48 87.66 0.66 22.43 16 13 O -0.58 -31.75 14.42 -3.02 -0.04 -31.79 16 14 N -0.61 -27.10 2.86 -851.12 -2.43 -29.53 16 15 C 0.08 2.43 10.24 127.77 1.31 3.74 16 16 C 0.25 13.79 4.47 85.63 0.38 14.17 16 17 C -0.62 -36.83 9.39 25.60 0.24 -36.59 16 18 H 0.04 2.61 7.81 -2.91 -0.02 2.59 16 19 C -0.03 -1.90 5.46 84.66 0.46 -1.43 16 20 N -0.93 -59.23 13.65 21.45 0.29 -58.94 16 21 Si 1.12 52.14 29.90 68.60 2.05 54.19 16 22 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 23 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 24 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 25 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.04 0.93 5.85 -2.38 -0.01 0.92 16 27 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.06 1.25 6.89 -2.38 -0.02 1.24 16 29 H 0.09 1.20 6.61 -2.38 -0.02 1.19 16 30 H 0.06 0.78 8.14 -2.39 -0.02 0.77 16 31 H 0.07 0.83 6.79 -2.39 -0.02 0.81 16 32 H 0.05 0.89 6.73 -2.39 -0.02 0.88 16 33 H 0.06 1.63 7.86 -2.39 -0.02 1.61 16 34 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.05 2.07 6.91 -2.38 -0.02 2.05 16 36 H 0.04 1.21 7.85 -2.39 -0.02 1.19 16 37 H 0.08 2.01 7.15 -2.38 -0.02 1.99 16 38 H 0.13 3.22 5.15 -2.38 -0.01 3.21 16 39 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.09 2.15 6.44 -2.39 -0.02 2.14 16 41 H 0.07 2.13 8.07 -2.38 -0.02 2.11 16 42 H 0.02 1.00 7.94 -2.39 -0.02 0.98 16 43 H -0.01 -0.66 7.29 -2.39 -0.02 -0.67 16 44 H 0.25 16.43 7.22 -92.71 -0.67 15.76 16 Total: -1.00 -78.17 336.00 2.59 -75.59 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: 1.06 Total: 12.39 kcal Atomic # 6 Polarization: -8.23 SS G_CDS: 5.48 Total: -2.76 kcal Atomic # 7 Polarization: -101.67 SS G_CDS: -5.96 Total: -107.62 kcal Atomic # 8 Polarization: -31.75 SS G_CDS: -0.04 Total: -31.79 kcal Atomic # 14 Polarization: 52.14 SS G_CDS: 2.05 Total: 54.19 kcal Total: -78.17 2.59 -75.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384293809.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.916 kcal (2) G-P(sol) polarization free energy of solvation -78.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds