Wall clock time and date at job start Mon Mar 30 2020 04:46:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46888 * 2 1 4 4 C 1.52996 * 109.47026 * 185.05231 * 3 2 1 5 5 H 1.08999 * 110.46294 * 52.13913 * 4 3 2 6 6 C 1.54384 * 110.41415 * 289.72531 * 4 3 2 7 7 C 1.54258 * 105.06035 * 217.36778 * 6 4 3 8 8 C 1.54374 * 105.06125 * 359.97438 * 7 6 4 9 9 N 1.48554 * 104.59556 * 23.85477 * 8 7 6 10 10 C 1.46905 * 111.00134 * 200.96220 * 9 8 7 11 11 C 1.50705 * 109.46546 * 279.69023 * 10 9 8 12 12 O 1.21281 * 120.00345 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99510 * 179.97438 * 11 10 9 14 14 C 1.46503 * 120.00339 * 0.02562 * 13 11 10 15 15 C 1.46503 * 119.99732 * 180.02562 * 13 11 10 16 16 C 1.50702 * 109.47269 * 270.00116 * 15 13 11 17 17 H 1.08006 * 119.99375 * 359.97438 * 16 15 13 18 18 C 1.37873 * 120.00432 * 179.72681 * 16 15 13 19 19 N 1.31515 * 119.99736 * 0.27275 * 18 16 15 20 20 Si 1.86797 * 120.00286 * 180.27515 * 18 16 15 21 21 H 1.48501 * 109.46974 * 59.99741 * 20 18 16 22 22 H 1.48505 * 109.47198 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.46979 * 299.99858 * 20 18 16 24 24 H 1.08999 * 109.47398 * 59.99372 * 1 2 3 25 25 H 1.09004 * 109.47081 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46884 * 299.99611 * 1 2 3 27 27 H 1.08998 * 109.46884 * 240.00389 * 2 1 3 28 28 H 1.08995 * 109.47172 * 120.00198 * 2 1 3 29 29 H 1.09004 * 109.46765 * 65.05261 * 3 2 1 30 30 H 1.08997 * 109.47408 * 305.05623 * 3 2 1 31 31 H 1.08999 * 110.31957 * 336.26638 * 6 4 3 32 32 H 1.08994 * 110.32483 * 98.47017 * 6 4 3 33 33 H 1.08999 * 110.31945 * 118.89909 * 7 6 4 34 34 H 1.08999 * 110.32265 * 241.10191 * 7 6 4 35 35 H 1.09005 * 110.41357 * 265.07232 * 8 7 6 36 36 H 1.09007 * 110.40873 * 142.63247 * 8 7 6 37 37 H 1.08995 * 109.47200 * 159.69377 * 10 9 8 38 38 H 1.08995 * 109.47025 * 39.68613 * 10 9 8 39 39 H 1.08997 * 109.46779 * 269.99993 * 14 13 11 40 40 H 1.08997 * 109.46556 * 30.00126 * 14 13 11 41 41 H 1.09005 * 109.47094 * 149.99764 * 14 13 11 42 42 H 1.08998 * 109.47244 * 150.00352 * 15 13 11 43 43 H 1.09000 * 109.47284 * 30.00113 * 15 13 11 44 44 H 0.97002 * 120.00224 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5647 1.4445 -0.1270 5 1 3.8767 0.8421 -0.9802 6 6 4.2138 0.9170 1.1706 7 6 5.4823 1.7739 1.3612 8 6 5.4932 2.7465 0.1624 9 7 4.0722 2.8339 -0.2617 10 6 3.9650 3.3014 -1.6503 11 6 4.1138 4.8006 -1.6883 12 8 4.2922 5.4186 -0.6601 13 7 4.0498 5.4544 -2.8652 14 6 3.8350 4.7078 -4.1072 15 6 4.1951 6.9117 -2.9023 16 6 2.8401 7.5555 -2.7586 17 1 1.9588 6.9404 -2.6508 18 6 2.7259 8.9295 -2.7595 19 7 3.7990 9.6783 -2.8912 20 14 1.0472 9.7274 -2.5736 21 1 0.4453 9.3183 -1.2792 22 1 1.1951 11.2048 -2.6053 23 1 0.1669 9.2936 -3.6880 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.7524 1.9295 0.9318 30 1 1.6046 1.9819 -0.8412 31 1 3.5364 1.0505 2.0140 32 1 4.4800 -0.1342 1.0606 33 1 5.4275 2.3279 2.2983 34 1 6.3711 1.1432 1.3447 35 1 6.1072 2.3477 -0.6451 36 1 5.8588 3.7260 0.4709 37 1 2.9915 3.0226 -2.0534 38 1 4.7514 2.8429 -2.2497 39 1 4.7978 4.4185 -4.5284 40 1 3.2471 3.8144 -3.8969 41 1 3.3002 5.3352 -4.8204 42 1 4.6393 7.2085 -3.8523 43 1 4.8389 7.2337 -2.0838 44 1 3.7187 10.6450 -2.8923 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396924751.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:19 Heat of formation + Delta-G solvation = -41.759915 kcal Electronic energy + Delta-G solvation = -21256.577334 eV Core-core repulsion = 18208.469992 eV Total energy + Delta-G solvation = -3048.107342 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.63748 -38.19063 -34.88141 -34.55864 -32.67226 -32.03563 -29.78027 -28.18025 -26.43386 -25.51117 -25.13371 -22.54549 -21.86228 -20.80418 -19.97226 -18.35184 -16.48687 -16.26306 -16.12312 -15.39297 -15.07295 -14.92712 -14.75710 -14.10358 -14.02600 -13.39045 -13.11589 -13.03303 -12.53004 -12.31555 -12.26515 -12.10419 -11.97758 -11.79395 -11.48893 -11.20492 -11.17092 -11.11233 -10.95885 -10.85835 -10.79938 -10.51526 -10.49037 -10.42671 -10.10443 -9.58113 -8.85771 -8.38513 -8.20450 -7.55244 -5.99369 -4.03822 3.35313 3.39620 3.42478 3.55064 3.73657 4.25992 4.49744 4.57844 4.75032 4.89118 4.98037 5.00773 5.09922 5.25080 5.26876 5.35107 5.41806 5.44559 5.52600 5.57105 5.67538 5.72056 5.73611 5.75820 5.80253 5.83751 5.95497 6.00733 6.08268 6.11106 6.22740 6.23134 6.26858 6.33262 6.97979 7.02082 7.20855 7.50209 7.62420 7.97711 8.29349 8.51152 8.96679 9.23197 9.61310 11.08680 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.019340 B = 0.004589 C = 0.004156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.400005 B = 6100.202619 C = 6734.897164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.106 4.106 4 C 0.061 3.939 5 H 0.048 0.952 6 C -0.116 4.116 7 C -0.124 4.124 8 C 0.036 3.964 9 N -0.485 5.485 10 C 0.027 3.973 11 C 0.506 3.494 12 O -0.521 6.521 13 N -0.608 5.608 14 C 0.085 3.915 15 C 0.247 3.753 16 C -0.524 4.524 17 H 0.056 0.944 18 C 0.061 3.939 19 N -0.896 5.896 20 Si 0.898 3.102 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.277 1.277 24 H 0.054 0.946 25 H 0.051 0.949 26 H 0.054 0.946 27 H 0.058 0.942 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.038 0.962 36 H 0.091 0.909 37 H 0.095 0.905 38 H 0.057 0.943 39 H 0.042 0.958 40 H 0.053 0.947 41 H 0.073 0.927 42 H 0.030 0.970 43 H 0.043 0.957 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.186 -20.869 2.653 21.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.144 4.144 4 C -0.047 4.047 5 H 0.066 0.934 6 C -0.155 4.155 7 C -0.162 4.162 8 C -0.092 4.092 9 N -0.209 5.209 10 C -0.104 4.104 11 C 0.291 3.709 12 O -0.396 6.396 13 N -0.342 5.342 14 C -0.059 4.059 15 C 0.128 3.872 16 C -0.563 4.563 17 H 0.074 0.926 18 C -0.141 4.141 19 N -0.536 5.536 20 Si 0.725 3.275 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.203 1.203 24 H 0.073 0.927 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.056 0.944 36 H 0.109 0.891 37 H 0.113 0.887 38 H 0.075 0.925 39 H 0.060 0.940 40 H 0.072 0.928 41 H 0.092 0.908 42 H 0.048 0.952 43 H 0.061 0.939 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.322 -19.925 3.504 20.233 hybrid contribution -0.508 -0.009 -0.708 0.872 sum -0.830 -19.934 2.796 20.146 Atomic orbital electron populations 1.21770 0.95864 1.01274 1.02082 1.21512 0.95842 0.96882 1.01717 1.21563 0.93504 0.96158 1.03189 1.22715 0.95625 0.89259 0.97146 0.93353 1.22332 0.97057 0.98544 0.97523 1.22286 0.97409 0.97350 0.99142 1.23155 0.88966 1.00716 0.96361 1.65026 1.15935 1.20033 1.19887 1.22228 1.02438 0.95331 0.90451 1.20121 0.78236 0.88531 0.83987 1.90658 1.47960 1.68570 1.32445 1.48168 1.70813 1.09986 1.05219 1.21602 0.99819 0.96330 0.88182 1.19242 0.97485 0.72446 0.98009 1.21411 0.93290 0.91459 1.50167 0.92570 1.24929 0.96919 0.97121 0.95126 1.69925 1.28187 1.05173 1.50272 0.86565 0.84117 0.78028 0.78749 1.20162 1.21196 1.20296 0.92688 0.93015 0.92653 0.92360 0.92045 0.90969 0.91844 0.90897 0.91690 0.90934 0.91694 0.94418 0.89102 0.88723 0.92499 0.93983 0.92785 0.90790 0.95163 0.93931 0.92722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.91 37.16 0.37 -0.93 16 2 C -0.12 -1.07 5.75 -26.73 -0.15 -1.23 16 3 C -0.11 -1.20 4.86 -26.73 -0.13 -1.33 16 4 C 0.06 0.72 2.24 -66.08 -0.15 0.57 16 5 H 0.05 0.53 7.99 -51.93 -0.42 0.11 16 6 C -0.12 -1.20 5.96 -25.35 -0.15 -1.35 16 7 C -0.12 -1.39 7.00 -25.35 -0.18 -1.57 16 8 C 0.04 0.51 6.07 -2.19 -0.01 0.50 16 9 N -0.49 -7.53 4.56 -223.59 -1.02 -8.55 16 10 C 0.03 0.43 3.86 -4.97 -0.02 0.41 16 11 C 0.51 10.95 7.58 -10.98 -0.08 10.86 16 12 O -0.52 -13.66 15.29 5.56 0.08 -13.57 16 13 N -0.61 -13.29 2.86 -182.95 -0.52 -13.81 16 14 C 0.09 1.37 10.24 59.85 0.61 1.99 16 15 C 0.25 6.65 5.16 -5.19 -0.03 6.62 16 16 C -0.52 -15.25 9.39 -34.44 -0.32 -15.57 16 17 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 18 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 19 N -0.90 -27.14 13.29 55.43 0.74 -26.40 16 20 Si 0.90 22.31 29.54 -169.99 -5.02 17.29 16 21 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.50 7.77 -51.93 -0.40 0.10 16 29 H 0.07 0.90 7.96 -51.93 -0.41 0.49 16 30 H 0.06 0.78 7.18 -51.93 -0.37 0.41 16 31 H 0.07 0.75 7.73 -51.93 -0.40 0.35 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.04 0.49 7.67 -51.93 -0.40 0.09 16 36 H 0.09 1.53 7.65 -51.93 -0.40 1.14 16 37 H 0.09 1.36 6.28 -51.93 -0.33 1.04 16 38 H 0.06 0.78 7.60 -51.93 -0.39 0.39 16 39 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.05 0.71 6.44 -51.93 -0.33 0.38 16 41 H 0.07 1.23 8.07 -51.93 -0.42 0.81 16 42 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 43 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 44 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 349.44 15.07 5.27 5.27 Total: -1.00 -33.60 349.44 -8.83 -42.43 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -8.01 Total: -3.31 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: -0.34 Total: 0.65 kcal Atomic # 7 Polarization: -47.95 SS G_CDS: -0.81 Total: -48.76 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: 0.08 Total: -13.57 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.60 -8.83 -42.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396924751.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.668 kcal (2) G-P(sol) polarization free energy of solvation -33.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds