Wall clock time and date at job start Mon Mar 30 2020 05:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46938 * 2 1 4 4 C 1.52997 * 109.46648 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.47029 * 180.02562 * 4 3 2 6 6 C 1.34775 * 120.00141 * 179.97438 * 5 4 3 7 7 O 1.21283 * 120.00209 * 359.97438 * 6 5 4 8 8 C 1.50704 * 120.00061 * 180.02562 * 6 5 4 9 9 H 1.08992 * 109.47274 * 60.00003 * 8 6 5 10 10 C 1.52998 * 109.46946 * 300.00054 * 8 6 5 11 11 N 1.46899 * 109.47014 * 180.02562 * 8 6 5 12 12 C 1.48728 * 111.01396 * 174.46101 * 11 8 6 13 13 C 1.54379 * 104.51490 * 158.96882 * 12 11 8 14 14 C 1.54262 * 105.15035 * 336.26872 * 13 12 11 15 15 H 1.08991 * 110.32605 * 118.85114 * 14 13 12 16 16 C 1.50703 * 110.32116 * 240.95519 * 14 13 12 17 17 H 1.08003 * 119.99886 * 118.54873 * 16 14 13 18 18 C 1.37879 * 120.00157 * 298.54324 * 16 14 13 19 19 N 1.31517 * 119.99446 * 0.02562 * 18 16 14 20 20 Si 1.86795 * 120.00341 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47193 * 89.99902 * 20 18 16 22 22 H 1.48498 * 109.47286 * 209.99958 * 20 18 16 23 23 H 1.48506 * 109.47130 * 330.00386 * 20 18 16 24 24 C 1.48564 * 111.00185 * 289.96933 * 11 8 6 25 25 H 1.09001 * 109.47266 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46989 * 300.00488 * 1 2 3 27 27 H 1.09007 * 109.47412 * 59.99854 * 1 2 3 28 28 H 1.08999 * 109.46978 * 240.00444 * 2 1 3 29 29 H 1.09002 * 109.47034 * 119.99908 * 2 1 3 30 30 H 1.08999 * 109.46923 * 60.00410 * 3 2 1 31 31 H 1.09002 * 109.47183 * 299.99817 * 3 2 1 32 32 H 1.08997 * 109.47635 * 59.99763 * 4 3 2 33 33 H 1.09002 * 109.47034 * 299.99730 * 4 3 2 34 34 H 0.96997 * 120.00072 * 0.02562 * 5 4 3 35 35 H 1.09006 * 109.47300 * 294.18615 * 10 8 6 36 36 H 1.08999 * 109.47375 * 54.18773 * 10 8 6 37 37 H 1.08998 * 109.47215 * 174.18928 * 10 8 6 38 38 H 1.08997 * 110.38647 * 40.24750 * 12 11 8 39 39 H 1.08997 * 110.50538 * 277.74963 * 12 11 8 40 40 H 1.09002 * 110.32158 * 217.32274 * 13 12 11 41 41 H 1.08996 * 110.32443 * 95.21591 * 13 12 11 42 42 H 0.97011 * 119.99601 * 179.97438 * 19 18 16 43 43 H 1.09003 * 110.40626 * 82.17984 * 24 11 8 44 44 H 1.08999 * 110.40940 * 319.74102 * 24 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8237 0.0000 6 6 5.3834 3.0699 0.0001 7 8 6.1716 2.1481 0.0001 8 6 5.8858 4.4908 0.0013 9 1 5.5226 5.0038 0.8917 10 6 5.3757 5.2131 -1.2472 11 7 7.3548 4.4907 0.0006 12 6 7.8881 5.8727 -0.1323 13 6 9.3293 5.7855 0.4142 14 6 9.3297 4.5646 1.3571 15 1 10.0346 3.8126 1.0025 16 6 9.6791 4.9875 2.7607 17 1 8.9699 4.8392 3.5617 18 6 10.9041 5.5636 3.0225 19 7 11.7674 5.7445 2.0470 20 14 11.3374 6.0871 4.7624 21 1 11.9954 4.9591 5.4694 22 1 12.2621 7.2480 4.7143 23 1 10.0990 6.4704 5.4870 24 6 7.8879 4.0157 1.3034 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9564 -0.8900 32 1 3.9330 0.9287 -0.8908 33 1 3.9336 0.9285 0.8892 34 1 3.4281 3.5610 0.0011 35 1 5.8214 4.7637 -2.1347 36 1 4.2906 5.1239 -1.3008 37 1 5.6516 6.2663 -1.1959 38 1 7.2966 6.5670 0.4646 39 1 7.8960 6.1801 -1.1780 40 1 9.5800 6.6908 0.9670 41 1 10.0352 5.6335 -0.4023 42 1 12.6292 6.1502 2.2311 43 1 7.8943 2.9262 1.3369 44 1 7.2967 4.4187 2.1257 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397591567.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:43 Heat of formation + Delta-G solvation = -51.742212 kcal Electronic energy + Delta-G solvation = -20860.516232 eV Core-core repulsion = 17811.976025 eV Total energy + Delta-G solvation = -3048.540207 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.83177 -37.71183 -36.18744 -33.95728 -33.54037 -31.76306 -29.20254 -28.25601 -27.97363 -24.54606 -24.19665 -22.82531 -21.58770 -20.47802 -19.54342 -19.17532 -16.87819 -16.38857 -16.10476 -15.88480 -15.11534 -14.79307 -14.52527 -14.18894 -13.95708 -13.72578 -13.46797 -12.93051 -12.66189 -12.41147 -12.16964 -12.03793 -11.74524 -11.65250 -11.45779 -11.44432 -11.35725 -10.99011 -10.96226 -10.74140 -10.57109 -10.47533 -10.19738 -9.64359 -9.37862 -9.16175 -8.98023 -8.65527 -8.32606 -7.72971 -5.96131 -3.99665 2.93021 3.18767 3.33108 3.39607 3.42318 4.45050 4.53326 4.60468 4.63100 4.72612 4.94248 5.06463 5.19474 5.23803 5.33542 5.36579 5.38265 5.45480 5.58678 5.63967 5.69587 5.78980 5.84331 5.92160 5.93490 5.99409 6.11607 6.19650 6.31270 6.47934 6.49954 6.66983 7.04041 7.23716 7.25170 7.50705 7.59619 7.75339 7.80168 7.96462 8.09104 8.49968 8.53783 9.03469 9.63732 11.13100 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.029576 B = 0.003543 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.477431 B = 7900.300153 C = 8453.057405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.131 4.131 4 C 0.120 3.880 5 N -0.740 5.740 6 C 0.519 3.481 7 O -0.512 6.512 8 C 0.053 3.947 9 H 0.062 0.938 10 C -0.140 4.140 11 N -0.494 5.494 12 C 0.033 3.967 13 C -0.091 4.091 14 C 0.049 3.951 15 H 0.033 0.967 16 C -0.514 4.514 17 H 0.053 0.947 18 C 0.062 3.938 19 N -0.887 5.887 20 Si 0.889 3.111 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.275 1.275 24 C 0.043 3.957 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.396 0.604 35 H 0.068 0.932 36 H 0.056 0.944 37 H 0.067 0.933 38 H 0.031 0.969 39 H 0.063 0.937 40 H 0.067 0.933 41 H 0.046 0.954 42 H 0.259 0.741 43 H 0.072 0.928 44 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.106 -4.082 -5.934 22.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.169 4.169 4 C -0.004 4.004 5 N -0.395 5.395 6 C 0.304 3.696 7 O -0.385 6.385 8 C -0.060 4.060 9 H 0.079 0.921 10 C -0.198 4.198 11 N -0.218 5.218 12 C -0.094 4.094 13 C -0.130 4.130 14 C 0.029 3.971 15 H 0.052 0.948 16 C -0.552 4.552 17 H 0.072 0.928 18 C -0.140 4.140 19 N -0.525 5.525 20 Si 0.717 3.283 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.200 1.200 24 C -0.084 4.084 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.230 0.770 35 H 0.087 0.913 36 H 0.075 0.925 37 H 0.086 0.914 38 H 0.049 0.951 39 H 0.082 0.918 40 H 0.086 0.914 41 H 0.065 0.935 42 H 0.069 0.931 43 H 0.091 0.909 44 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -20.161 -5.049 -6.420 21.753 hybrid contribution -0.358 1.219 1.661 2.092 sum -20.519 -3.830 -4.759 21.409 Atomic orbital electron populations 1.21767 0.95613 1.01734 1.01825 1.21442 0.95967 0.96046 1.02615 1.21825 0.94433 0.97954 1.02652 1.21305 0.93301 0.83442 1.02353 1.46034 1.07302 1.08398 1.77767 1.20660 0.81619 0.91692 0.75604 1.90703 1.54943 1.46068 1.46809 1.21742 0.92857 0.92281 0.99154 0.92076 1.21809 0.99852 1.00814 0.97287 1.65360 1.02551 1.19848 1.34087 1.23249 0.98373 0.88484 0.99319 1.22190 0.91066 1.01498 0.98232 1.19362 0.89774 0.93164 0.94758 0.94832 1.21206 1.00627 1.40003 0.93408 0.92838 1.24969 0.96350 0.95931 0.96746 1.70000 1.07503 1.43878 1.31149 0.86644 0.78241 0.78176 0.85212 1.20696 1.21278 1.20047 1.23351 0.98179 1.00108 0.86765 0.92643 0.92703 0.92735 0.91633 0.91598 0.91347 0.91372 0.91687 0.91699 0.76998 0.91252 0.92500 0.91393 0.95056 0.91842 0.91446 0.93547 0.93084 0.90915 0.95353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.91 37.16 0.37 -0.51 16 2 C -0.12 -0.82 5.93 -26.73 -0.16 -0.98 16 3 C -0.13 -0.93 5.33 -26.73 -0.14 -1.07 16 4 C 0.12 1.25 5.67 -4.04 -0.02 1.23 16 5 N -0.74 -8.56 5.41 -60.29 -0.33 -8.89 16 6 C 0.52 8.44 6.96 -10.98 -0.08 8.36 16 7 O -0.51 -10.68 14.85 5.56 0.08 -10.60 16 8 C 0.05 0.84 2.31 -68.86 -0.16 0.68 16 9 H 0.06 0.94 7.88 -51.93 -0.41 0.53 16 10 C -0.14 -1.71 8.69 37.16 0.32 -1.39 16 11 N -0.49 -10.02 4.89 -223.26 -1.09 -11.11 16 12 C 0.03 0.66 5.15 -2.09 -0.01 0.64 16 13 C -0.09 -2.21 5.74 -25.35 -0.15 -2.35 16 14 C 0.05 1.28 2.99 -90.39 -0.27 1.01 16 15 H 0.03 0.98 8.14 -51.93 -0.42 0.56 16 16 C -0.51 -14.52 8.37 -34.44 -0.29 -14.80 16 17 H 0.05 1.50 7.59 -52.48 -0.40 1.10 16 18 C 0.06 1.75 5.09 -17.82 -0.09 1.66 16 19 N -0.89 -25.98 12.35 55.43 0.68 -25.30 16 20 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 C 0.04 1.00 5.34 -2.18 -0.01 0.99 16 25 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 26 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.05 0.29 8.14 -51.92 -0.42 -0.13 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.40 3.36 7.83 -40.82 -0.32 3.04 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.06 0.51 7.41 -51.93 -0.38 0.13 16 37 H 0.07 0.79 7.17 -51.93 -0.37 0.42 16 38 H 0.03 0.59 8.00 -51.93 -0.42 0.17 16 39 H 0.06 1.12 7.79 -51.93 -0.40 0.72 16 40 H 0.07 1.75 7.24 -51.93 -0.38 1.37 16 41 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 42 H 0.26 7.23 8.31 -40.81 -0.34 6.89 16 43 H 0.07 1.78 6.92 -51.93 -0.36 1.42 16 44 H 0.03 0.65 7.39 -51.93 -0.38 0.27 16 LS Contribution 347.08 15.07 5.23 5.23 Total: -1.00 -32.29 347.08 -9.16 -41.45 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -8.03 Total: -0.84 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: -0.69 Total: -6.54 kcal Atomic # 7 Polarization: -44.56 SS G_CDS: -0.73 Total: -45.30 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.08 Total: -10.60 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.29 -9.16 -41.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397591567.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.295 kcal (2) G-P(sol) polarization free energy of solvation -32.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds