Wall clock time and date at job start Mon Mar 30 2020 05:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52989 * 109.47303 * 2 1 4 4 H 1.09003 * 109.47591 * 304.99799 * 3 2 1 5 5 C 1.53007 * 109.47130 * 184.99796 * 3 2 1 6 6 N 1.46498 * 109.47473 * 65.00163 * 3 2 1 7 7 C 1.34782 * 120.00182 * 204.99864 * 6 3 2 8 8 O 1.21280 * 119.99941 * 0.02562 * 7 6 3 9 9 C 1.50702 * 119.99941 * 179.97438 * 7 6 3 10 10 H 1.09001 * 109.47069 * 300.00330 * 9 7 6 11 11 C 1.52997 * 109.46731 * 60.00321 * 9 7 6 12 12 N 1.46900 * 109.46704 * 180.02562 * 9 7 6 13 13 C 1.48720 * 111.01831 * 64.49224 * 12 9 7 14 14 C 1.54381 * 104.51692 * 158.96284 * 13 12 9 15 15 C 1.54257 * 105.14978 * 336.27274 * 14 13 12 16 16 H 1.08995 * 110.32672 * 118.84838 * 15 14 13 17 17 C 1.50701 * 110.32069 * 240.94890 * 15 14 13 18 18 H 1.08001 * 120.00030 * 118.54578 * 17 15 14 19 19 C 1.37881 * 120.00352 * 298.54543 * 17 15 14 20 20 N 1.31511 * 119.99467 * 0.02562 * 19 17 15 21 21 Si 1.86797 * 120.00369 * 179.97438 * 19 17 15 22 22 H 1.48509 * 109.46989 * 90.00064 * 21 19 17 23 23 H 1.48497 * 109.47250 * 209.99973 * 21 19 17 24 24 H 1.48501 * 109.47363 * 330.00536 * 21 19 17 25 25 C 1.48567 * 110.99718 * 180.02562 * 12 9 7 26 26 H 1.09002 * 109.46366 * 59.99834 * 1 2 3 27 27 H 1.08989 * 109.47288 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46849 * 300.00212 * 1 2 3 29 29 H 1.09001 * 109.46849 * 239.99788 * 2 1 3 30 30 H 1.09002 * 109.46366 * 120.00166 * 2 1 3 31 31 H 1.09001 * 109.46592 * 60.00355 * 5 3 2 32 32 H 1.08996 * 109.47112 * 179.97438 * 5 3 2 33 33 H 1.08995 * 109.47167 * 300.00309 * 5 3 2 34 34 H 0.97003 * 119.99891 * 24.99496 * 6 3 2 35 35 H 1.09003 * 109.46770 * 180.02562 * 11 9 7 36 36 H 1.08994 * 109.47426 * 299.99332 * 11 9 7 37 37 H 1.08996 * 109.47736 * 60.00024 * 11 9 7 38 38 H 1.09004 * 110.38960 * 40.24251 * 13 12 9 39 39 H 1.08996 * 110.50963 * 277.74694 * 13 12 9 40 40 H 1.09002 * 110.32526 * 217.32092 * 14 13 12 41 41 H 1.08998 * 110.32190 * 95.21733 * 14 13 12 42 42 H 0.96999 * 119.99733 * 179.97438 * 20 19 17 43 43 H 1.08999 * 110.41133 * 82.17552 * 25 12 9 44 44 H 1.09001 * 110.41003 * 319.73948 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6056 1.9815 -0.8418 5 6 3.5650 1.4442 -0.1257 6 7 1.6526 2.0974 1.2518 7 6 1.5259 3.4384 1.2996 8 8 1.7322 4.1028 0.3061 9 6 1.1267 4.1122 2.5871 10 1 0.1505 3.7439 2.9024 11 6 2.1631 3.8001 3.6685 12 7 1.0579 5.5647 2.3787 13 6 -0.0160 5.9144 1.4112 14 6 -0.3290 7.3983 1.7001 15 6 0.1202 7.6286 3.1578 16 1 0.9044 8.3845 3.1973 17 6 -1.0524 8.0474 4.0068 18 1 -1.3613 7.4347 4.8408 19 6 -1.7308 9.2127 3.7189 20 7 -1.3549 9.9585 2.7030 21 14 -3.1847 9.7314 4.7708 22 1 -2.7067 10.5797 5.8922 23 1 -4.1455 10.5024 3.9417 24 1 -3.8575 8.5246 5.3151 25 6 0.6669 6.2640 3.6298 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.8533 0.9569 -1.0571 32 1 3.9283 2.4718 -0.1261 33 1 3.9996 0.9051 0.7161 34 1 1.4872 1.5660 2.0463 35 1 1.8742 4.2870 4.5999 36 1 2.2138 2.7223 3.8230 37 1 3.1394 4.1682 3.3533 38 1 -0.8988 5.2990 1.5847 39 1 0.3379 5.7929 0.3875 40 1 -1.3979 7.5864 1.5991 41 1 0.2336 8.0424 1.0244 42 1 -1.8324 10.7781 2.5002 43 1 1.5348 6.4041 4.2742 44 1 -0.1088 5.7038 4.1519 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397658037.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:53 Heat of formation + Delta-G solvation = -47.626210 kcal Electronic energy + Delta-G solvation = -21427.142424 eV Core-core repulsion = 18378.780700 eV Total energy + Delta-G solvation = -3048.361724 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.00881 -37.85445 -36.24118 -33.78526 -32.53567 -31.49561 -29.86198 -28.58341 -27.50482 -25.03637 -24.14714 -23.15942 -21.17902 -20.46738 -19.75060 -19.15063 -16.94465 -16.57857 -15.98443 -15.25214 -15.06541 -14.52849 -14.30410 -13.95773 -13.93697 -13.71255 -13.43052 -13.00490 -12.57151 -12.34705 -12.16093 -12.07588 -11.96752 -11.66729 -11.50878 -11.33797 -11.22961 -10.98424 -10.90574 -10.84968 -10.57599 -10.37434 -10.14954 -9.65700 -9.33686 -9.21412 -9.01778 -8.64743 -8.33393 -7.72016 -5.97316 -4.01569 2.89803 3.18758 3.31872 3.38765 3.41060 4.43917 4.48060 4.64941 4.78545 4.83349 4.93615 5.22740 5.24491 5.35593 5.36771 5.38552 5.41374 5.56230 5.66339 5.68252 5.69574 5.90375 5.92562 5.98065 6.01553 6.11329 6.18680 6.27701 6.37328 6.46818 6.54164 6.72239 6.95117 7.20225 7.33588 7.51426 7.63014 7.75681 7.79450 7.95116 8.06001 8.47145 8.51864 9.01478 9.62061 11.11818 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.033736 B = 0.003927 C = 0.003881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.775533 B = 7128.155440 C = 7213.707658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.130 4.130 3 C 0.141 3.859 4 H 0.086 0.914 5 C -0.163 4.163 6 N -0.732 5.732 7 C 0.521 3.479 8 O -0.516 6.516 9 C 0.053 3.947 10 H 0.060 0.940 11 C -0.138 4.138 12 N -0.493 5.493 13 C 0.034 3.966 14 C -0.090 4.090 15 C 0.048 3.952 16 H 0.033 0.967 17 C -0.516 4.516 18 H 0.054 0.946 19 C 0.062 3.938 20 N -0.885 5.885 21 Si 0.889 3.111 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.275 1.275 25 C 0.042 3.958 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.054 0.946 34 H 0.396 0.604 35 H 0.070 0.930 36 H 0.055 0.945 37 H 0.067 0.933 38 H 0.023 0.977 39 H 0.078 0.922 40 H 0.065 0.935 41 H 0.045 0.955 42 H 0.260 0.740 43 H 0.062 0.938 44 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.917 -20.122 -2.538 21.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.168 4.168 3 C 0.036 3.964 4 H 0.104 0.896 5 C -0.221 4.221 6 N -0.387 5.387 7 C 0.307 3.693 8 O -0.390 6.390 9 C -0.060 4.060 10 H 0.077 0.923 11 C -0.196 4.196 12 N -0.218 5.218 13 C -0.094 4.094 14 C -0.129 4.129 15 C 0.029 3.971 16 H 0.051 0.949 17 C -0.555 4.555 18 H 0.072 0.928 19 C -0.139 4.139 20 N -0.523 5.523 21 Si 0.717 3.283 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.200 1.200 25 C -0.085 4.085 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.094 0.906 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.230 0.770 35 H 0.089 0.911 36 H 0.074 0.926 37 H 0.086 0.914 38 H 0.041 0.959 39 H 0.097 0.903 40 H 0.083 0.917 41 H 0.064 0.936 42 H 0.070 0.930 43 H 0.080 0.920 44 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 6.553 -19.292 -3.574 20.686 hybrid contribution -1.735 -0.269 1.232 2.145 sum 4.818 -19.561 -2.342 20.282 Atomic orbital electron populations 1.21777 0.95319 1.01522 1.02477 1.21825 0.96569 0.95600 1.02782 1.20935 0.94772 0.92748 0.87920 0.89558 1.22176 0.95591 1.02808 1.01567 1.46121 1.72202 1.07111 1.13222 1.20679 0.76494 0.81615 0.90526 1.90674 1.48177 1.63663 1.36449 1.21761 0.99075 0.92470 0.92715 0.92255 1.21764 0.99245 1.00537 0.98052 1.65358 1.44353 1.02673 1.09462 1.23297 0.90713 0.98572 0.96791 1.22180 1.01113 0.90843 0.98765 1.19369 0.95558 0.90187 0.91967 0.94855 1.21189 1.13894 1.06889 1.13528 0.92783 1.24969 0.97341 0.96447 0.95192 1.69997 1.40515 1.14105 1.27699 0.86648 0.82654 0.78612 0.80373 1.20701 1.21275 1.20038 1.23331 0.97544 0.97248 0.90402 0.92534 0.92688 0.92468 0.90605 0.91544 0.91971 0.91829 0.92660 0.77050 0.91127 0.92587 0.91430 0.95886 0.90349 0.91668 0.93609 0.93041 0.92001 0.94766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.80 37.16 0.36 -0.82 16 2 C -0.13 -0.93 5.47 -26.73 -0.15 -1.08 16 3 C 0.14 1.41 2.57 -67.93 -0.17 1.23 16 4 H 0.09 1.06 7.58 -51.93 -0.39 0.67 16 5 C -0.16 -1.55 9.48 37.16 0.35 -1.20 16 6 N -0.73 -8.05 4.42 -53.81 -0.24 -8.29 16 7 C 0.52 8.05 6.88 -10.98 -0.08 7.98 16 8 O -0.52 -10.08 14.08 5.56 0.08 -10.00 16 9 C 0.05 0.83 2.25 -68.86 -0.16 0.67 16 10 H 0.06 0.90 7.98 -51.93 -0.41 0.49 16 11 C -0.14 -1.75 8.94 37.16 0.33 -1.42 16 12 N -0.49 -9.96 4.94 -223.25 -1.10 -11.07 16 13 C 0.03 0.73 5.66 -2.09 -0.01 0.72 16 14 C -0.09 -2.26 5.74 -25.35 -0.15 -2.41 16 15 C 0.05 1.24 2.99 -90.38 -0.27 0.97 16 16 H 0.03 0.94 8.14 -51.93 -0.42 0.52 16 17 C -0.52 -14.26 8.37 -34.44 -0.29 -14.55 16 18 H 0.05 1.46 7.59 -52.49 -0.40 1.06 16 19 C 0.06 1.75 5.09 -17.82 -0.09 1.66 16 20 N -0.89 -25.84 12.35 55.43 0.68 -25.16 16 21 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 C 0.04 0.89 4.88 -2.17 -0.01 0.88 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.05 0.36 8.14 -51.94 -0.42 -0.07 16 28 H 0.06 0.48 7.75 -51.93 -0.40 0.07 16 29 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.40 3.31 8.02 -40.82 -0.33 2.99 16 35 H 0.07 0.91 6.94 -51.93 -0.36 0.55 16 36 H 0.06 0.52 7.56 -51.93 -0.39 0.13 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.02 0.48 7.91 -51.93 -0.41 0.07 16 39 H 0.08 1.75 6.58 -51.93 -0.34 1.41 16 40 H 0.06 1.75 7.24 -51.93 -0.38 1.38 16 41 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 43 H 0.06 1.24 7.67 -51.93 -0.40 0.85 16 44 H 0.03 0.72 7.54 -51.93 -0.39 0.33 16 LS Contribution 344.89 15.07 5.20 5.20 Total: -1.00 -31.35 344.89 -8.69 -40.04 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -7.97 Total: 0.30 kcal Atomic # 6 Polarization: -7.03 SS G_CDS: -0.32 Total: -7.35 kcal Atomic # 7 Polarization: -43.86 SS G_CDS: -0.66 Total: -44.52 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: 0.08 Total: -10.00 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.35 -8.69 -40.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397658037.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.582 kcal (2) G-P(sol) polarization free energy of solvation -31.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds