Wall clock time and date at job start Mon Mar 30 2020 05:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47347 * 2 1 4 4 H 1.08999 * 109.46742 * 304.99950 * 3 2 1 5 5 C 1.52999 * 109.46988 * 184.99737 * 3 2 1 6 6 N 1.46498 * 109.46924 * 64.99703 * 3 2 1 7 7 C 1.34784 * 119.99564 * 204.99960 * 6 3 2 8 8 O 1.21282 * 120.00193 * 0.02562 * 7 6 3 9 9 C 1.50702 * 119.99860 * 180.02562 * 7 6 3 10 10 H 1.09002 * 109.46798 * 33.17442 * 9 7 6 11 11 C 1.53006 * 109.47263 * 273.17571 * 9 7 6 12 12 N 1.46898 * 109.47133 * 153.17470 * 9 7 6 13 13 C 1.48561 * 110.99529 * 294.76121 * 12 9 7 14 14 C 1.54379 * 104.59168 * 200.96091 * 13 12 9 15 15 C 1.54261 * 105.06328 * 23.85055 * 14 13 12 16 16 H 1.08998 * 110.32780 * 241.00325 * 15 14 13 17 17 C 1.50701 * 110.32264 * 118.89498 * 15 14 13 18 18 H 1.07997 * 120.00225 * 241.45781 * 17 15 14 19 19 C 1.37873 * 119.99801 * 61.45840 * 17 15 14 20 20 N 1.31512 * 120.00336 * 359.97438 * 19 17 15 21 21 Si 1.86807 * 120.00136 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.46889 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47012 * 240.00410 * 21 19 17 24 24 H 1.48496 * 109.47262 * 119.99893 * 21 19 17 25 25 C 1.48558 * 110.99910 * 179.34440 * 12 9 7 26 26 H 1.09004 * 109.47426 * 300.00777 * 1 2 3 27 27 H 1.09005 * 109.46707 * 59.99951 * 1 2 3 28 28 H 1.09000 * 109.47453 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47601 * 239.99877 * 2 1 3 30 30 H 1.09003 * 109.47141 * 119.99744 * 2 1 3 31 31 H 1.08994 * 109.47272 * 299.99335 * 5 3 2 32 32 H 1.08993 * 109.47428 * 60.00404 * 5 3 2 33 33 H 1.09005 * 109.46582 * 179.97438 * 5 3 2 34 34 H 0.96996 * 120.00798 * 25.00342 * 6 3 2 35 35 H 1.09000 * 109.47254 * 180.02562 * 11 9 7 36 36 H 1.08997 * 109.46817 * 300.00056 * 11 9 7 37 37 H 1.08997 * 109.47238 * 59.99801 * 11 9 7 38 38 H 1.08992 * 110.41199 * 82.18594 * 13 12 9 39 39 H 1.08999 * 110.41695 * 319.73518 * 13 12 9 40 40 H 1.09005 * 110.32522 * 264.95699 * 14 13 12 41 41 H 1.08998 * 110.32889 * 142.74812 * 14 13 12 42 42 H 0.97001 * 119.99794 * 0.02562 * 20 19 17 43 43 H 1.09000 * 110.41494 * 40.25992 * 25 12 9 44 44 H 1.09000 * 110.41272 * 277.81845 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5648 1.4443 -0.1257 6 7 1.6524 2.0975 1.2518 7 6 1.5256 3.4385 1.2995 8 8 1.7320 4.1029 0.3060 9 6 1.1275 4.1124 2.5873 10 1 1.5355 3.5548 3.4303 11 6 -0.3985 4.1512 2.6920 12 7 1.6545 5.4834 2.6058 13 6 3.1399 5.4823 2.6324 14 6 3.5201 6.8736 3.1830 15 6 2.2884 7.3363 3.9882 16 1 1.8824 8.2550 3.5647 17 6 2.6571 7.5459 5.4343 18 1 2.1796 6.9578 6.2041 19 6 3.6039 8.4885 5.7747 20 7 4.1858 9.2044 4.8374 21 14 4.0615 8.7479 7.5672 22 1 3.2700 7.8240 8.4187 23 1 3.7683 10.1511 7.9549 24 1 5.5093 8.4752 7.7529 25 6 1.2677 6.1856 3.8565 26 1 -0.3634 0.5140 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.9994 0.9054 0.7162 32 1 3.8532 0.9570 -1.0570 33 1 3.9281 2.4720 -0.1261 34 1 1.4870 1.5662 2.0463 35 1 -0.6865 4.6390 3.6233 36 1 -0.8065 4.7087 1.8490 37 1 -0.7896 3.1339 2.6783 38 1 3.5380 5.3499 1.6264 39 1 3.5078 4.6982 3.2941 40 1 3.7176 7.5642 2.3631 41 1 4.3913 6.7982 3.8337 42 1 3.9484 9.0695 3.9066 43 1 1.3425 5.5115 4.7097 44 1 0.2560 6.5827 3.7722 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397658042.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:59 Heat of formation + Delta-G solvation = -75.058741 kcal Electronic energy + Delta-G solvation = -21482.260321 eV Core-core repulsion = 18432.709034 eV Total energy + Delta-G solvation = -3049.551287 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.32114 -39.60278 -37.40305 -35.80575 -33.88948 -32.84863 -30.73799 -30.35137 -29.31709 -26.56342 -25.31798 -24.36619 -22.68623 -21.64892 -21.38589 -21.00334 -19.03366 -18.20443 -17.46215 -16.83359 -16.17017 -16.06082 -15.64831 -15.38134 -15.01287 -14.85708 -14.63909 -14.36032 -14.32285 -13.79280 -13.54418 -13.36939 -13.24979 -13.02083 -12.78597 -12.70447 -12.62099 -12.32985 -12.17968 -12.16725 -11.94480 -11.90806 -11.84063 -11.63915 -11.43577 -10.69100 -10.57235 -10.45146 -10.09637 -9.45758 -8.58232 -6.32059 1.54311 1.60956 1.63572 1.79034 2.08912 2.58691 3.02787 3.21976 3.65189 3.80466 3.87708 3.99821 4.05107 4.08810 4.18145 4.22142 4.32527 4.41340 4.47840 4.61380 4.62832 4.70282 4.74173 4.77835 4.83675 4.87828 4.98449 5.00022 5.07882 5.12134 5.17409 5.17864 5.25204 5.33638 5.41752 5.57282 5.58149 5.66877 5.99996 6.14683 6.23495 6.58959 6.65677 7.29538 7.50265 8.80421 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.034108 B = 0.004001 C = 0.003876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.727302 B = 6996.163351 C = 7222.990423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C 0.139 3.861 4 H 0.063 0.937 5 C -0.161 4.161 6 N -0.712 5.712 7 C 0.522 3.478 8 O -0.565 6.565 9 C 0.050 3.950 10 H 0.075 0.925 11 C -0.132 4.132 12 N -0.505 5.505 13 C 0.053 3.947 14 C -0.103 4.103 15 C 0.021 3.979 16 H -0.008 1.008 17 C -0.604 4.604 18 H 0.052 0.948 19 C -0.033 4.033 20 N -0.938 5.938 21 Si 1.120 2.880 22 H -0.268 1.268 23 H -0.282 1.282 24 H -0.282 1.282 25 C 0.066 3.934 26 H 0.053 0.947 27 H 0.044 0.956 28 H 0.070 0.930 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.027 0.973 34 H 0.413 0.587 35 H 0.072 0.928 36 H 0.053 0.947 37 H 0.094 0.906 38 H 0.064 0.936 39 H 0.042 0.958 40 H 0.029 0.971 41 H 0.044 0.956 42 H 0.261 0.739 43 H 0.045 0.955 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.890 -22.129 -5.534 23.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C 0.034 3.966 4 H 0.081 0.919 5 C -0.220 4.220 6 N -0.366 5.366 7 C 0.308 3.692 8 O -0.443 6.443 9 C -0.062 4.062 10 H 0.093 0.907 11 C -0.189 4.189 12 N -0.230 5.230 13 C -0.075 4.075 14 C -0.142 4.142 15 C 0.002 3.998 16 H 0.010 0.990 17 C -0.642 4.642 18 H 0.070 0.930 19 C -0.231 4.231 20 N -0.576 5.576 21 Si 0.942 3.058 22 H -0.193 1.193 23 H -0.208 1.208 24 H -0.208 1.208 25 C -0.061 4.061 26 H 0.072 0.928 27 H 0.063 0.937 28 H 0.089 0.911 29 H 0.109 0.891 30 H 0.103 0.897 31 H 0.088 0.912 32 H 0.100 0.900 33 H 0.046 0.954 34 H 0.249 0.751 35 H 0.091 0.909 36 H 0.072 0.928 37 H 0.113 0.887 38 H 0.082 0.918 39 H 0.061 0.939 40 H 0.048 0.952 41 H 0.062 0.938 42 H 0.071 0.929 43 H 0.063 0.937 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -6.015 -20.547 -5.753 22.169 hybrid contribution -0.443 -0.818 -0.340 0.991 sum -6.458 -21.366 -6.092 23.137 Atomic orbital electron populations 1.21784 0.95277 1.02336 1.01701 1.21785 0.96468 0.93126 1.04434 1.21070 0.94813 0.94363 0.86327 0.91907 1.22157 0.95442 1.01008 1.03349 1.46015 1.70124 1.05855 1.14573 1.20613 0.75970 0.82772 0.89841 1.90674 1.50608 1.65179 1.37793 1.21930 0.99168 0.90225 0.94882 0.90695 1.21735 0.90266 1.03862 1.03072 1.65266 1.07643 1.13901 1.36236 1.22885 0.88625 0.96816 0.99168 1.22273 0.99576 0.95082 0.97225 1.19545 0.91984 0.93114 0.95130 0.99005 1.22380 1.25796 1.23666 0.92345 0.92987 1.27255 0.93706 0.92685 1.09463 1.70822 1.43393 1.41201 1.02143 0.82893 0.76392 0.76652 0.69832 1.19291 1.20837 1.20786 1.22941 0.98823 0.95290 0.89073 0.92758 0.93711 0.91120 0.89147 0.89747 0.91235 0.90004 0.95366 0.75065 0.90895 0.92823 0.88733 0.91753 0.93943 0.95221 0.93764 0.92851 0.93711 0.90826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.80 71.98 0.71 -1.04 16 2 C -0.12 -1.31 5.47 30.59 0.17 -1.15 16 3 C 0.14 2.56 2.57 44.99 0.12 2.67 16 4 H 0.06 1.50 7.58 -2.39 -0.02 1.48 16 5 C -0.16 -3.05 9.48 71.98 0.68 -2.36 16 6 N -0.71 -14.35 4.53 -442.52 -2.00 -16.36 16 7 C 0.52 15.52 6.32 87.66 0.55 16.08 16 8 O -0.57 -22.29 15.67 -3.04 -0.05 -22.34 16 9 C 0.05 1.48 2.24 44.17 0.10 1.58 16 10 H 0.08 1.95 7.97 -2.39 -0.02 1.93 16 11 C -0.13 -3.17 9.02 71.98 0.65 -2.52 16 12 N -0.51 -19.96 4.87 -860.72 -4.20 -24.15 16 13 C 0.05 2.23 5.77 86.45 0.50 2.73 16 14 C -0.10 -5.17 5.03 31.49 0.16 -5.01 16 15 C 0.02 1.12 2.65 -10.64 -0.03 1.09 16 16 H -0.01 -0.48 8.04 -2.39 -0.02 -0.50 16 17 C -0.60 -33.83 8.37 25.60 0.21 -33.62 16 18 H 0.05 2.83 7.58 -2.91 -0.02 2.80 16 19 C -0.03 -1.88 5.09 84.65 0.43 -1.45 16 20 N -0.94 -58.04 13.27 21.45 0.28 -57.75 16 21 Si 1.12 50.17 29.90 68.60 2.05 52.22 16 22 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 23 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 24 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 25 C 0.07 2.78 4.84 86.45 0.42 3.20 16 26 H 0.05 0.64 7.75 -2.38 -0.02 0.62 16 27 H 0.04 0.61 8.14 -2.38 -0.02 0.59 16 28 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.03 0.72 8.14 -2.38 -0.02 0.70 16 34 H 0.41 5.68 8.60 -92.71 -0.80 4.88 16 35 H 0.07 1.74 6.92 -2.39 -0.02 1.72 16 36 H 0.05 1.47 8.14 -2.39 -0.02 1.46 16 37 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.06 2.77 7.60 -2.39 -0.02 2.75 16 39 H 0.04 1.67 7.89 -2.39 -0.02 1.65 16 40 H 0.03 1.53 7.92 -2.38 -0.02 1.51 16 41 H 0.04 2.39 7.23 -2.39 -0.02 2.38 16 42 H 0.26 16.44 6.00 -92.71 -0.56 15.88 16 43 H 0.04 1.82 7.54 -2.39 -0.02 1.80 16 44 H 0.07 2.95 7.67 -2.39 -0.02 2.93 16 Total: -1.00 -72.32 345.80 1.12 -71.19 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: 0.37 Total: 16.98 kcal Atomic # 6 Polarization: -24.45 SS G_CDS: 4.67 Total: -19.79 kcal Atomic # 7 Polarization: -92.35 SS G_CDS: -5.92 Total: -98.26 kcal Atomic # 8 Polarization: -22.29 SS G_CDS: -0.05 Total: -22.34 kcal Atomic # 14 Polarization: 50.17 SS G_CDS: 2.05 Total: 52.22 kcal Total: -72.32 1.12 -71.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397658042.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.866 kcal (2) G-P(sol) polarization free energy of solvation -72.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds