Wall clock time and date at job start Mon Mar 30 2020 04:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46832 * 2 1 4 4 C 1.53001 * 109.46530 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47162 * 55.00484 * 4 3 2 6 6 C 1.53006 * 109.46912 * 174.99942 * 4 3 2 7 7 N 1.46504 * 109.47558 * 295.00059 * 4 3 2 8 8 C 1.34781 * 120.00073 * 155.00036 * 7 4 3 9 9 O 1.21285 * 119.99930 * 0.02562 * 8 7 4 10 10 C 1.50694 * 119.99727 * 180.02562 * 8 7 4 11 11 N 1.46904 * 109.46734 * 173.81109 * 10 8 7 12 12 C 1.47901 * 110.99697 * 183.34368 * 11 10 8 13 13 C 1.53997 * 107.05843 * 145.84160 * 12 11 10 14 14 C 1.54593 * 105.13913 * 358.77277 * 13 12 11 15 15 H 1.09003 * 110.72625 * 96.57507 * 14 13 12 16 16 C 1.50698 * 110.72616 * 219.68373 * 14 13 12 17 17 H 1.07998 * 120.00180 * 114.71959 * 16 14 13 18 18 C 1.37878 * 119.99914 * 294.71691 * 16 14 13 19 19 N 1.31508 * 120.00180 * 2.61359 * 18 16 14 20 20 Si 1.86804 * 119.99791 * 182.61023 * 18 16 14 21 21 H 1.48505 * 109.46853 * 265.01582 * 20 18 16 22 22 H 1.48498 * 109.47406 * 25.01498 * 20 18 16 23 23 H 1.48499 * 109.47177 * 145.01931 * 20 18 16 24 24 C 1.48536 * 110.99878 * 300.73646 * 11 10 8 25 25 H 1.08998 * 109.47221 * 59.99401 * 1 2 3 26 26 H 1.08998 * 109.47271 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47288 * 299.99922 * 1 2 3 28 28 H 1.08995 * 109.47002 * 240.00162 * 2 1 3 29 29 H 1.08997 * 109.46801 * 120.00269 * 2 1 3 30 30 H 1.09000 * 109.47419 * 60.00681 * 3 2 1 31 31 H 1.08997 * 109.47647 * 299.99751 * 3 2 1 32 32 H 1.08996 * 109.47049 * 300.00261 * 6 4 3 33 33 H 1.09000 * 109.46765 * 60.00299 * 6 4 3 34 34 H 1.09005 * 109.47111 * 180.02562 * 6 4 3 35 35 H 0.97001 * 119.99925 * 335.00425 * 7 4 3 36 36 H 1.08996 * 109.47447 * 53.81208 * 10 8 7 37 37 H 1.09004 * 109.47372 * 293.80708 * 10 8 7 38 38 H 1.09001 * 109.91996 * 26.49272 * 12 11 10 39 39 H 1.09002 * 109.91671 * 265.19080 * 12 11 10 40 40 H 1.08996 * 110.31219 * 239.86153 * 13 12 11 41 41 H 1.09002 * 110.39228 * 117.73351 * 13 12 11 42 42 H 0.96998 * 120.00391 * 179.97438 * 19 18 16 43 43 H 1.09002 * 110.66747 * 81.84599 * 24 11 10 44 44 H 1.09001 * 110.66450 * 318.71775 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9336 0.8530 -0.8410 6 6 4.0801 2.8795 -0.1251 7 7 4.0579 0.8589 1.2527 8 6 5.2798 0.2923 1.3010 9 8 5.9757 0.2660 0.3080 10 6 5.7814 -0.3084 2.5888 11 7 7.0618 -0.9866 2.3467 12 6 7.5463 -1.6575 3.5725 13 6 8.2735 -2.9402 3.1281 14 6 8.1417 -2.9661 1.5881 15 1 9.0341 -2.5534 1.1175 16 6 7.8827 -4.3677 1.0985 17 1 6.9430 -4.6089 0.6240 18 6 8.8455 -5.3419 1.2563 19 7 9.9689 -5.0614 1.8798 20 14 8.5540 -7.0605 0.5846 21 1 8.0070 -7.9261 1.6602 22 1 7.5852 -6.9952 -0.5390 23 1 9.8381 -7.6264 0.0988 24 6 6.9121 -2.0593 1.3302 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.6767 1.9564 0.8900 31 1 1.6767 1.9564 -0.8899 32 1 3.7171 3.3137 -1.0566 33 1 3.7164 3.4690 0.7165 34 1 5.1701 2.8795 -0.1251 35 1 3.5014 0.8802 2.0470 36 1 5.0534 -1.0290 2.9614 37 1 5.9222 0.4808 3.3274 38 1 6.7030 -1.9123 4.2145 39 1 8.2377 -1.0042 4.1048 40 1 7.7943 -3.8170 3.5636 41 1 9.3237 -2.9010 3.4174 42 1 10.6460 -5.7469 1.9912 43 1 6.9456 -1.6428 0.3235 44 1 5.9863 -2.6125 1.4882 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397694427.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:05 Heat of formation + Delta-G solvation = -52.329661 kcal Electronic energy + Delta-G solvation = -21037.884372 eV Core-core repulsion = 17989.318692 eV Total energy + Delta-G solvation = -3048.565680 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.83482 -37.78748 -36.45983 -33.55221 -33.11978 -31.36135 -30.26839 -28.11401 -26.93387 -26.14338 -24.09209 -22.10913 -21.16223 -20.42886 -19.90228 -19.45062 -16.84332 -16.52029 -16.12300 -15.25294 -15.01291 -14.73737 -14.46163 -14.17681 -14.04424 -13.71377 -13.24935 -12.90718 -12.74165 -12.54027 -12.33758 -12.19669 -11.96690 -11.68105 -11.37853 -11.17889 -11.04513 -11.00416 -10.93874 -10.80653 -10.65186 -10.44955 -10.16993 -9.70066 -9.33348 -9.14488 -8.90126 -8.69791 -8.32788 -7.69375 -5.95966 -3.98540 2.92781 3.21294 3.33305 3.40534 3.44777 4.43987 4.46896 4.72346 4.74560 4.79061 5.01436 5.14888 5.21876 5.29612 5.37377 5.37948 5.51660 5.53191 5.55406 5.59145 5.65140 5.82515 5.86233 5.88149 6.01773 6.06464 6.07244 6.15181 6.30230 6.50230 6.55505 6.65943 7.05055 7.22313 7.27010 7.52562 7.60715 7.73791 7.80208 7.94691 8.12777 8.51922 8.52983 9.04392 9.65055 11.14089 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.021119 B = 0.004147 C = 0.003736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.488404 B = 6750.834047 C = 7493.179239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.127 4.127 3 C -0.125 4.125 4 C 0.141 3.859 5 H 0.087 0.913 6 C -0.163 4.163 7 N -0.734 5.734 8 C 0.514 3.486 9 O -0.512 6.512 10 C 0.029 3.971 11 N -0.505 5.505 12 C 0.034 3.966 13 C -0.104 4.104 14 C 0.052 3.948 15 H 0.038 0.962 16 C -0.513 4.513 17 H 0.054 0.946 18 C 0.063 3.937 19 N -0.888 5.888 20 Si 0.889 3.111 21 H -0.283 1.283 22 H -0.274 1.274 23 H -0.286 1.286 24 C 0.042 3.958 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.062 0.938 33 H 0.054 0.946 34 H 0.063 0.937 35 H 0.395 0.605 36 H 0.054 0.946 37 H 0.094 0.906 38 H 0.028 0.972 39 H 0.063 0.937 40 H 0.054 0.946 41 H 0.061 0.939 42 H 0.259 0.741 43 H 0.082 0.918 44 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.803 13.528 1.121 21.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.165 4.165 3 C -0.163 4.163 4 C 0.036 3.964 5 H 0.105 0.895 6 C -0.221 4.221 7 N -0.389 5.389 8 C 0.300 3.700 9 O -0.385 6.385 10 C -0.103 4.103 11 N -0.229 5.229 12 C -0.094 4.094 13 C -0.142 4.142 14 C 0.033 3.967 15 H 0.057 0.943 16 C -0.552 4.552 17 H 0.073 0.927 18 C -0.139 4.139 19 N -0.526 5.526 20 Si 0.717 3.283 21 H -0.209 1.209 22 H -0.199 1.199 23 H -0.212 1.212 24 C -0.084 4.084 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.229 0.771 36 H 0.072 0.928 37 H 0.113 0.887 38 H 0.046 0.954 39 H 0.082 0.918 40 H 0.072 0.928 41 H 0.079 0.921 42 H 0.069 0.931 43 H 0.100 0.900 44 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -15.734 13.829 0.259 20.949 hybrid contribution -1.047 -1.526 0.500 1.917 sum -16.782 12.303 0.759 20.822 Atomic orbital electron populations 1.21773 0.95888 1.01700 1.01556 1.21544 0.95632 0.96513 1.02761 1.21918 0.94063 0.97514 1.02799 1.20925 0.93129 0.94350 0.87947 0.89457 1.22175 1.02411 0.95980 1.01552 1.46115 1.18177 1.61307 1.13262 1.20698 0.80810 0.77680 0.90846 1.90705 1.55412 1.55947 1.36439 1.22151 0.93675 0.99662 0.94794 1.64695 1.22076 1.27828 1.08316 1.23013 0.98065 0.97063 0.91221 1.22350 0.99187 0.92818 0.99889 1.19545 0.92533 0.93305 0.91354 0.94340 1.21105 1.01418 0.94006 1.38645 0.92747 1.24964 0.95148 0.98621 0.95130 1.69980 1.07173 1.33621 1.41846 0.86627 0.77624 0.84768 0.79265 1.20891 1.19890 1.21181 1.23489 0.99132 0.90320 0.95508 0.92850 0.92723 0.92878 0.91755 0.91740 0.91559 0.90590 0.91950 0.92725 0.91836 0.77113 0.92771 0.88746 0.95403 0.91823 0.92767 0.92064 0.93111 0.90014 0.95621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.91 37.16 0.37 -0.71 16 2 C -0.13 -1.07 5.82 -26.73 -0.16 -1.22 16 3 C -0.12 -0.95 4.75 -26.73 -0.13 -1.07 16 4 C 0.14 1.46 2.57 -67.92 -0.17 1.29 16 5 H 0.09 1.13 7.58 -51.93 -0.39 0.74 16 6 C -0.16 -1.58 9.48 37.16 0.35 -1.23 16 7 N -0.73 -8.15 4.53 -53.80 -0.24 -8.39 16 8 C 0.51 8.03 7.43 -10.99 -0.08 7.95 16 9 O -0.51 -10.30 13.96 5.55 0.08 -10.23 16 10 C 0.03 0.45 5.30 -4.98 -0.03 0.42 16 11 N -0.50 -10.17 5.11 -231.88 -1.18 -11.35 16 12 C 0.03 0.67 6.70 -2.75 -0.02 0.65 16 13 C -0.10 -2.49 5.67 -25.37 -0.14 -2.64 16 14 C 0.05 1.37 2.94 -89.91 -0.26 1.11 16 15 H 0.04 1.13 8.14 -51.93 -0.42 0.70 16 16 C -0.51 -14.59 8.38 -34.44 -0.29 -14.88 16 17 H 0.05 1.53 7.78 -52.49 -0.41 1.13 16 18 C 0.06 1.79 5.37 -17.82 -0.10 1.70 16 19 N -0.89 -26.09 12.62 55.43 0.70 -25.39 16 20 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 22 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 C 0.04 0.98 5.00 -1.90 -0.01 0.97 16 25 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.58 7.75 -51.93 -0.40 0.18 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.40 3.23 8.60 -40.82 -0.35 2.88 16 36 H 0.05 0.76 7.98 -51.93 -0.41 0.35 16 37 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 38 H 0.03 0.49 7.68 -51.93 -0.40 0.09 16 39 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.05 1.35 7.84 -51.93 -0.41 0.95 16 41 H 0.06 1.55 8.12 -51.93 -0.42 1.12 16 42 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 43 H 0.08 2.02 6.43 -51.93 -0.33 1.68 16 44 H 0.03 0.59 7.90 -51.93 -0.41 0.18 16 LS Contribution 350.10 15.07 5.28 5.28 Total: -1.00 -32.00 350.10 -9.21 -41.21 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -8.15 Total: -0.13 kcal Atomic # 6 Polarization: -7.02 SS G_CDS: -0.67 Total: -7.68 kcal Atomic # 7 Polarization: -44.41 SS G_CDS: -0.73 Total: -45.13 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: 0.08 Total: -10.23 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.00 -9.21 -41.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397694427.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.121 kcal (2) G-P(sol) polarization free energy of solvation -31.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds