Wall clock time and date at job start Mon Mar 30 2020 05:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46924 * 2 1 4 4 C 1.52996 * 109.47139 * 120.00339 * 2 1 3 5 5 N 1.46496 * 109.47187 * 65.00001 * 4 2 1 6 6 C 1.46502 * 120.00384 * 270.00084 * 5 4 2 7 7 C 1.50700 * 109.46632 * 270.00229 * 6 5 4 8 8 H 1.07994 * 120.00707 * 359.97438 * 7 6 5 9 9 C 1.37887 * 119.99284 * 179.97438 * 7 6 5 10 10 N 1.31506 * 120.00347 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99479 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.47136 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.46950 * 119.99928 * 11 9 7 14 14 H 1.48492 * 109.47159 * 239.99682 * 11 9 7 15 15 C 1.34775 * 119.99992 * 89.99964 * 5 4 2 16 16 O 1.21287 * 120.00275 * 180.02562 * 15 5 4 17 17 C 1.50705 * 120.00113 * 359.97438 * 15 5 4 18 18 H 1.08997 * 109.47054 * 320.00588 * 17 15 5 19 19 N 1.46896 * 109.47310 * 199.99693 * 17 15 5 20 20 C 1.52997 * 109.47019 * 79.99931 * 17 15 5 21 21 C 1.53781 * 113.61525 * 87.51323 * 20 17 15 22 22 C 1.54048 * 86.98544 * 140.02210 * 21 20 17 23 23 C 1.53774 * 87.07841 * 334.56952 * 22 21 20 24 24 H 1.09005 * 109.46836 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47161 * 299.99933 * 1 2 3 26 26 H 1.08996 * 109.47001 * 60.00043 * 1 2 3 27 27 H 1.09000 * 109.47377 * 240.00574 * 2 1 3 28 28 H 1.09005 * 109.47083 * 179.97438 * 3 2 1 29 29 H 1.08993 * 109.47517 * 300.00263 * 3 2 1 30 30 H 1.09000 * 109.47201 * 60.00612 * 3 2 1 31 31 H 1.09003 * 109.47263 * 305.00083 * 4 2 1 32 32 H 1.09004 * 109.47299 * 184.99929 * 4 2 1 33 33 H 1.09002 * 109.46748 * 29.99374 * 6 5 4 34 34 H 1.09000 * 109.47300 * 150.00137 * 6 5 4 35 35 H 0.97001 * 120.00054 * 180.02562 * 10 9 7 36 36 H 1.00903 * 111.00236 * 185.75538 * 19 17 15 37 37 H 1.00901 * 111.00081 * 309.71519 * 19 17 15 38 38 H 1.09008 * 112.85045 * 316.31594 * 20 17 15 39 39 H 1.09007 * 113.61445 * 254.61197 * 21 20 17 40 40 H 1.08997 * 113.61685 * 25.51151 * 21 20 17 41 41 H 1.09004 * 113.61638 * 220.02055 * 22 21 20 42 42 H 1.08998 * 113.69315 * 89.13310 * 22 21 20 43 43 H 1.09005 * 113.61473 * 270.88288 * 23 22 21 44 44 H 1.08997 * 113.62093 * 139.98207 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6525 -2.1329 1.1904 6 6 0.3746 -2.5661 1.7611 7 6 0.5718 -2.9410 3.2073 8 1 1.5509 -2.8647 3.6564 9 6 -0.4982 -3.3815 3.9572 10 7 -1.6907 -3.4740 3.4106 11 14 -0.2537 -3.8469 5.7498 12 1 1.1711 -3.6545 6.1212 13 1 -1.1085 -2.9856 6.6058 14 1 -0.6296 -5.2698 5.9474 15 6 2.4716 -3.0330 0.6114 16 8 2.1505 -4.2016 0.5623 17 6 3.7858 -2.5874 0.0238 18 1 3.6511 -1.6333 -0.4858 19 7 4.2590 -3.5931 -0.9366 20 6 4.8165 -2.4266 1.1431 21 6 5.5736 -3.7235 1.4743 22 6 6.8366 -2.8532 1.6184 23 6 6.1611 -1.8537 0.6648 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5137 -0.8900 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6054 -0.2619 2.1370 32 1 3.1264 -0.6444 1.2951 33 1 -0.3484 -1.7533 1.6918 34 1 0.0043 -3.4299 1.2090 35 1 -2.4434 -3.7835 3.9383 36 1 5.1818 -3.3644 -1.2746 37 1 4.2410 -4.5169 -0.5312 38 1 4.4133 -1.9202 2.0201 39 1 5.2542 -4.1897 2.4064 40 1 5.6202 -4.4264 0.6426 41 1 7.7337 -3.3137 1.2044 42 1 6.9871 -2.4631 2.6250 43 1 6.3681 -2.0464 -0.3879 44 1 6.3156 -0.8114 0.9437 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398953640.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:06 Heat of formation + Delta-G solvation = -48.065407 kcal Electronic energy + Delta-G solvation = -22184.974271 eV Core-core repulsion = 19136.593503 eV Total energy + Delta-G solvation = -3048.380769 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.48118 -39.51661 -37.80444 -35.43311 -34.35089 -34.10807 -30.25200 -28.17023 -27.93197 -26.93766 -26.54578 -25.34235 -23.51681 -21.40817 -20.11006 -19.82244 -18.66960 -18.17202 -17.45191 -16.87046 -16.53201 -16.21008 -15.91807 -15.58151 -15.31035 -14.75153 -14.44745 -14.26063 -13.88300 -13.66249 -13.54235 -13.44041 -13.20445 -13.01374 -12.95884 -12.75045 -12.63517 -12.53563 -12.17762 -12.08383 -11.82075 -11.65260 -11.56968 -11.52604 -11.38707 -11.17850 -10.64257 -10.43355 -9.65013 -9.35751 -8.22800 -6.37381 1.32568 1.35026 1.46461 1.84974 2.27698 2.42994 3.05968 3.47843 3.60380 3.72109 3.75464 3.87049 3.93641 3.99584 4.06346 4.23128 4.30635 4.53746 4.62977 4.67683 4.75618 4.77311 4.84049 4.87305 4.92423 5.03225 5.05686 5.05985 5.10556 5.13372 5.23472 5.27885 5.30736 5.44962 5.50686 5.52574 5.59669 5.88408 6.05501 6.08547 6.58115 6.70876 6.83604 7.28046 7.51957 8.83974 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.014076 B = 0.007272 C = 0.005706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.740625 B = 3849.656836 C = 4906.281658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.108 4.108 3 C -0.135 4.135 4 C 0.108 3.892 5 N -0.596 5.596 6 C 0.262 3.738 7 C -0.540 4.540 8 H 0.050 0.950 9 C 0.008 3.992 10 N -0.928 5.928 11 Si 0.964 3.036 12 H -0.268 1.268 13 H -0.268 1.268 14 H -0.282 1.282 15 C 0.501 3.499 16 O -0.594 6.594 17 C 0.098 3.902 18 H 0.119 0.881 19 N -0.831 5.831 20 C -0.147 4.147 21 C -0.155 4.155 22 C -0.128 4.128 23 C -0.115 4.115 24 H 0.027 0.973 25 H 0.050 0.950 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.067 0.933 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.098 0.902 33 H 0.035 0.965 34 H -0.012 1.012 35 H 0.266 0.734 36 H 0.359 0.641 37 H 0.345 0.655 38 H 0.084 0.916 39 H 0.041 0.959 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.081 0.919 43 H 0.099 0.901 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.527 10.303 -6.367 20.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.127 4.127 3 C -0.193 4.193 4 C -0.014 4.014 5 N -0.326 5.326 6 C 0.140 3.860 7 C -0.579 4.579 8 H 0.068 0.932 9 C -0.191 4.191 10 N -0.568 5.568 11 Si 0.789 3.211 12 H -0.192 1.192 13 H -0.193 1.193 14 H -0.208 1.208 15 C 0.290 3.710 16 O -0.475 6.475 17 C -0.017 4.017 18 H 0.137 0.863 19 N -0.366 5.366 20 C -0.168 4.168 21 C -0.192 4.192 22 C -0.166 4.166 23 C -0.152 4.152 24 H 0.046 0.954 25 H 0.069 0.931 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.093 0.907 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.116 0.884 33 H 0.053 0.947 34 H 0.006 0.994 35 H 0.075 0.925 36 H 0.176 0.824 37 H 0.160 0.840 38 H 0.102 0.898 39 H 0.060 0.940 40 H 0.104 0.896 41 H 0.103 0.897 42 H 0.099 0.901 43 H 0.117 0.883 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 15.540 9.885 -6.804 19.634 hybrid contribution -0.186 -1.034 1.821 2.102 sum 15.354 8.851 -4.982 18.409 Atomic orbital electron populations 1.21892 0.96243 1.00549 1.01763 1.21546 0.95690 0.97974 0.97495 1.21727 1.01868 0.93103 1.02583 1.21909 1.00988 0.79689 0.98860 1.48118 1.20044 1.08504 1.55915 1.18813 0.81240 0.94144 0.91785 1.21748 0.94792 1.44589 0.96724 0.93185 1.25833 0.94724 0.95221 1.03338 1.70057 1.00650 1.47741 1.38331 0.85416 0.78474 0.77935 0.79283 1.19212 1.19277 1.20832 1.21231 0.86700 0.85334 0.77743 1.90601 1.76432 1.20124 1.60356 1.21257 0.90077 0.97479 0.92910 0.86346 1.58727 1.32605 1.05302 1.39984 1.23362 0.95501 0.99339 0.98613 1.23170 0.98034 0.96695 1.01343 1.22782 0.96411 0.96916 1.00466 1.22922 0.91953 1.00055 1.00298 0.95432 0.93083 0.91387 0.91351 0.90709 0.91400 0.92379 0.91182 0.88437 0.94708 0.99424 0.92463 0.82444 0.83972 0.89817 0.94023 0.89551 0.89664 0.90052 0.88312 0.89338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.64 8.18 71.98 0.59 -4.05 16 2 C -0.11 -2.87 2.94 -10.79 -0.03 -2.90 16 3 C -0.14 -2.48 9.19 71.98 0.66 -1.82 16 4 C 0.11 3.45 4.47 86.38 0.39 3.84 16 5 N -0.60 -25.96 2.28 -826.14 -1.88 -27.84 16 6 C 0.26 14.49 4.23 85.63 0.36 14.85 16 7 C -0.54 -31.88 9.39 25.60 0.24 -31.64 16 8 H 0.05 2.94 7.81 -2.91 -0.02 2.91 16 9 C 0.01 0.45 5.46 84.66 0.46 0.91 16 10 N -0.93 -57.31 13.29 21.45 0.28 -57.02 16 11 Si 0.96 45.89 29.54 68.60 2.03 47.91 16 12 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 13 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 14 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 15 C 0.50 21.74 6.91 87.66 0.61 22.35 16 16 O -0.59 -32.19 15.60 -3.05 -0.05 -32.23 16 17 C 0.10 2.87 2.44 44.17 0.11 2.98 16 18 H 0.12 2.98 6.19 -2.39 -0.01 2.97 16 19 N -0.83 -22.71 8.46 -171.81 -1.45 -24.16 16 20 C -0.15 -3.64 2.90 -10.27 -0.03 -3.67 16 21 C -0.15 -3.84 7.32 31.21 0.23 -3.61 16 22 C -0.13 -2.21 8.09 31.21 0.25 -1.95 16 23 C -0.11 -1.79 7.46 31.12 0.23 -1.56 16 24 H 0.03 1.08 5.89 -2.38 -0.01 1.06 16 25 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.07 1.84 7.27 -2.39 -0.02 1.82 16 28 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 29 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.07 2.40 8.07 -2.39 -0.02 2.38 16 32 H 0.10 2.50 5.09 -2.38 -0.01 2.49 16 33 H 0.04 1.94 5.98 -2.39 -0.01 1.93 16 34 H -0.01 -0.81 7.42 -2.39 -0.02 -0.82 16 35 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 36 H 0.36 6.89 7.32 -89.69 -0.66 6.23 16 37 H 0.34 10.72 6.61 -89.69 -0.59 10.13 16 38 H 0.08 2.34 7.01 -2.38 -0.02 2.33 16 39 H 0.04 1.25 8.14 -2.38 -0.02 1.23 16 40 H 0.09 2.04 5.89 -2.39 -0.01 2.03 16 41 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 42 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.10 1.22 6.81 -2.38 -0.02 1.21 16 44 H 0.09 1.12 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -75.26 338.43 2.74 -72.52 By element: Atomic # 1 Polarization: 27.36 SS G_CDS: -0.25 Total: 27.11 kcal Atomic # 6 Polarization: -10.35 SS G_CDS: 4.07 Total: -6.28 kcal Atomic # 7 Polarization: -105.98 SS G_CDS: -3.05 Total: -109.03 kcal Atomic # 8 Polarization: -32.19 SS G_CDS: -0.05 Total: -32.23 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.91 kcal Total: -75.26 2.74 -72.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398953640.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.456 kcal (2) G-P(sol) polarization free energy of solvation -75.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds