Wall clock time and date at job start Mon Mar 30 2020 05:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53010 * 109.47107 * 2 1 4 4 H 1.09005 * 110.41719 * 54.14218 * 3 2 1 5 5 C 1.54903 * 110.37382 * 176.45289 * 3 2 1 6 6 C 1.55138 * 101.65429 * 155.89743 * 5 3 2 7 7 H 1.09002 * 110.70625 * 82.90121 * 6 5 3 8 8 C 1.52997 * 110.71018 * 205.96478 * 6 5 3 9 9 C 1.54323 * 103.02033 * 324.34913 * 6 5 3 10 10 N 1.47444 * 107.23149 * 22.27848 * 9 6 5 11 11 C 1.46904 * 110.99844 * 123.25992 * 10 9 6 12 12 C 1.50700 * 109.47179 * 69.15725 * 11 10 9 13 13 O 1.21274 * 119.99777 * 0.02562 * 12 11 10 14 14 N 1.34778 * 119.99803 * 179.97438 * 12 11 10 15 15 C 1.46501 * 120.00212 * 0.02562 * 14 12 11 16 16 C 1.46498 * 119.99329 * 180.02562 * 14 12 11 17 17 C 1.50706 * 109.47177 * 90.00617 * 16 14 12 18 18 H 1.08004 * 119.99644 * 359.97438 * 17 16 14 19 19 C 1.37872 * 119.99862 * 179.97438 * 17 16 14 20 20 N 1.31517 * 120.00442 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 119.99942 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47008 * 59.99394 * 21 19 17 23 23 H 1.48495 * 109.47141 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.46955 * 299.99937 * 21 19 17 25 25 H 1.09004 * 109.47319 * 60.00040 * 1 2 3 26 26 H 1.09000 * 109.47410 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47276 * 300.00002 * 1 2 3 28 28 H 1.08994 * 109.47423 * 240.00136 * 2 1 3 29 29 H 1.09004 * 109.47319 * 119.99960 * 2 1 3 30 30 H 1.09004 * 110.98868 * 37.80892 * 5 3 2 31 31 H 1.09001 * 110.99195 * 273.98986 * 5 3 2 32 32 H 1.09002 * 109.47153 * 59.99929 * 8 6 5 33 33 H 1.09001 * 109.46832 * 300.00120 * 8 6 5 34 34 H 1.09004 * 109.47261 * 180.02562 * 8 6 5 35 35 H 1.08997 * 109.89189 * 141.68255 * 9 6 5 36 36 H 1.09001 * 109.88524 * 262.87756 * 9 6 5 37 37 H 1.09001 * 109.46933 * 189.16303 * 11 10 9 38 38 H 1.08999 * 109.47102 * 309.15836 * 11 10 9 39 39 H 1.08997 * 109.46723 * 89.99849 * 15 14 12 40 40 H 1.08992 * 109.46673 * 210.00135 * 15 14 12 41 41 H 1.09004 * 109.47112 * 330.00082 * 15 14 12 42 42 H 1.08999 * 109.46792 * 209.99921 * 16 14 12 43 43 H 1.08989 * 109.47743 * 329.99932 * 16 14 12 44 44 H 0.96998 * 119.99813 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6025 2.0006 0.8280 5 6 3.5862 1.4679 0.0898 6 6 3.9142 2.8467 -0.5411 7 1 3.8126 3.6423 0.1970 8 6 5.3211 2.8456 -1.1424 9 6 2.8479 2.9850 -1.6481 10 7 1.7257 2.0996 -1.2866 11 6 0.4676 2.8530 -1.1995 12 6 0.0538 3.3010 -2.5776 13 8 0.7392 3.0198 -3.5378 14 7 -1.0784 4.0131 -2.7431 15 6 -1.9066 4.3523 -1.5832 16 6 -1.4808 4.4480 -4.0829 17 6 -2.3519 3.3921 -4.7133 18 1 -2.5823 2.4874 -4.1704 19 6 -2.8547 3.5812 -5.9831 20 7 -2.5745 4.6831 -6.6441 21 14 -3.9339 2.2720 -6.7649 22 1 -5.1425 2.0623 -5.9279 23 1 -4.3418 2.7130 -8.1229 24 1 -3.1746 0.9998 -6.8654 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 4.0244 0.6577 -0.4929 31 1 3.9178 1.4245 1.1273 32 1 5.3851 2.0802 -1.9158 33 1 6.0502 2.6338 -0.3604 34 1 5.5304 3.8222 -1.5790 35 1 2.5026 4.0174 -1.7035 36 1 3.2670 2.6798 -2.6069 37 1 -0.3089 2.2159 -0.7761 38 1 0.6098 3.7252 -0.5615 39 1 -1.5818 5.3079 -1.1719 40 1 -2.9498 4.4246 -1.8905 41 1 -1.8042 3.5765 -0.8244 42 1 -2.0377 5.3822 -4.0096 43 1 -0.5935 4.6013 -4.6970 44 1 -2.9285 4.8162 -7.5373 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399801507.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:11 Heat of formation + Delta-G solvation = -37.336522 kcal Electronic energy + Delta-G solvation = -21632.268812 eV Core-core repulsion = 18584.353283 eV Total energy + Delta-G solvation = -3047.915529 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.85420 -38.23212 -34.69859 -34.03484 -32.76278 -32.37923 -29.27161 -28.10559 -26.77066 -25.66496 -24.88193 -23.16806 -22.08527 -20.61475 -19.57948 -18.26635 -16.78162 -16.39995 -15.99081 -15.54405 -14.90489 -14.48421 -14.42698 -14.16490 -13.53713 -13.37346 -13.12151 -12.81433 -12.61091 -12.57853 -12.30542 -12.13968 -12.01933 -11.79125 -11.67638 -11.30745 -11.13841 -11.12863 -10.87008 -10.73976 -10.65082 -10.52801 -10.51250 -10.32686 -10.10793 -9.58392 -8.78835 -8.38782 -8.05000 -7.55848 -5.99633 -4.04100 3.35173 3.39495 3.42285 3.54552 3.77089 4.27245 4.49073 4.51581 4.64102 4.84024 5.13011 5.17792 5.24411 5.28673 5.34692 5.38330 5.43910 5.47800 5.52174 5.59348 5.66275 5.71932 5.73868 5.78708 5.92230 5.95109 5.99188 6.06661 6.06738 6.17714 6.22670 6.32412 6.39824 6.45439 7.02501 7.17898 7.25122 7.49707 7.61921 7.97356 8.28938 8.50427 8.96297 9.21970 9.61030 11.08390 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.022679 B = 0.004753 C = 0.004469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.345161 B = 5890.149547 C = 6263.775270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.106 4.106 3 C 0.071 3.929 4 H 0.052 0.948 5 C -0.119 4.119 6 C -0.118 4.118 7 H 0.070 0.930 8 C -0.139 4.139 9 C 0.060 3.940 10 N -0.503 5.503 11 C 0.026 3.974 12 C 0.504 3.496 13 O -0.522 6.522 14 N -0.608 5.608 15 C 0.085 3.915 16 C 0.247 3.753 17 C -0.524 4.524 18 H 0.056 0.944 19 C 0.061 3.939 20 N -0.896 5.896 21 Si 0.898 3.102 22 H -0.277 1.277 23 H -0.286 1.286 24 H -0.276 1.276 25 H 0.067 0.933 26 H 0.052 0.948 27 H 0.047 0.953 28 H 0.071 0.929 29 H 0.060 0.940 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.059 0.941 33 H 0.052 0.948 34 H 0.055 0.945 35 H 0.050 0.950 36 H 0.085 0.915 37 H 0.102 0.898 38 H 0.052 0.948 39 H 0.042 0.958 40 H 0.074 0.926 41 H 0.054 0.946 42 H 0.030 0.970 43 H 0.043 0.957 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.494 -4.040 17.288 20.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.144 4.144 3 C -0.038 4.038 4 H 0.070 0.930 5 C -0.157 4.157 6 C -0.138 4.138 7 H 0.089 0.911 8 C -0.196 4.196 9 C -0.068 4.068 10 N -0.227 5.227 11 C -0.105 4.105 12 C 0.289 3.711 13 O -0.397 6.397 14 N -0.341 5.341 15 C -0.060 4.060 16 C 0.128 3.872 17 C -0.563 4.563 18 H 0.075 0.925 19 C -0.141 4.141 20 N -0.536 5.536 21 Si 0.725 3.275 22 H -0.203 1.203 23 H -0.212 1.212 24 H -0.202 1.202 25 H 0.086 0.914 26 H 0.071 0.929 27 H 0.066 0.934 28 H 0.090 0.910 29 H 0.078 0.922 30 H 0.096 0.904 31 H 0.088 0.912 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.103 0.897 37 H 0.120 0.880 38 H 0.070 0.930 39 H 0.060 0.940 40 H 0.092 0.908 41 H 0.072 0.928 42 H 0.048 0.952 43 H 0.061 0.939 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 9.736 -4.450 16.180 19.401 hybrid contribution -0.789 0.059 0.203 0.817 sum 8.947 -4.391 16.383 19.177 Atomic orbital electron populations 1.21902 0.96049 1.01627 1.01921 1.21451 0.96012 0.95149 1.01784 1.22635 0.94940 0.95709 0.90476 0.93041 1.22797 0.94819 0.97469 1.00572 1.22443 0.96076 0.97380 0.97867 0.91112 1.21714 0.95200 1.02122 1.00609 1.22839 0.90047 0.95407 0.98500 1.63184 1.01340 1.29564 1.28655 1.22443 0.94169 0.97588 0.96295 1.20166 0.81593 0.79075 0.90219 1.90660 1.53032 1.54443 1.41603 1.48165 1.22386 1.53829 1.09768 1.21605 0.96915 0.98837 0.88605 1.19241 0.96153 0.94891 0.76897 1.21408 1.30131 1.04219 1.00544 0.92549 1.24929 0.96610 0.95723 0.96826 1.69926 1.45271 1.25622 1.12742 0.86567 0.80558 0.82063 0.78289 1.20290 1.21205 1.20154 0.91409 0.92930 0.93399 0.90987 0.92158 0.90402 0.91219 0.92157 0.92867 0.92600 0.93177 0.89711 0.88002 0.92992 0.93988 0.90764 0.92772 0.95178 0.93943 0.92726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.82 8.91 37.15 0.33 -1.49 16 2 C -0.11 -1.18 5.64 -26.73 -0.15 -1.33 16 3 C 0.07 0.83 2.55 -66.18 -0.17 0.66 16 4 H 0.05 0.57 7.81 -51.93 -0.41 0.16 16 5 C -0.12 -1.21 5.94 -24.60 -0.15 -1.36 16 6 C -0.12 -1.30 3.54 -88.80 -0.31 -1.62 16 7 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 8 C -0.14 -1.35 9.16 37.16 0.34 -1.01 16 9 C 0.06 0.89 5.20 -2.83 -0.01 0.87 16 10 N -0.50 -7.72 4.40 -224.80 -0.99 -8.71 16 11 C 0.03 0.42 3.18 -4.97 -0.02 0.40 16 12 C 0.50 10.83 7.30 -10.98 -0.08 10.75 16 13 O -0.52 -13.52 15.09 5.56 0.08 -13.44 16 14 N -0.61 -13.24 2.86 -182.96 -0.52 -13.76 16 15 C 0.08 1.37 10.24 59.85 0.61 1.98 16 16 C 0.25 6.63 5.16 -5.19 -0.03 6.60 16 17 C -0.52 -15.19 9.39 -34.44 -0.32 -15.52 16 18 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 19 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 20 N -0.90 -27.09 13.29 55.43 0.74 -26.35 16 21 Si 0.90 22.27 29.54 -169.99 -5.02 17.25 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 25 H 0.07 0.96 5.91 -51.93 -0.31 0.65 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.08 0.81 7.96 -51.93 -0.41 0.40 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.62 8.06 -51.93 -0.42 0.20 16 33 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.05 0.79 7.30 -51.93 -0.38 0.41 16 36 H 0.08 1.43 7.77 -51.93 -0.40 1.03 16 37 H 0.10 1.48 4.49 -51.93 -0.23 1.24 16 38 H 0.05 0.73 7.95 -51.93 -0.41 0.31 16 39 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.07 1.23 8.07 -51.93 -0.42 0.81 16 41 H 0.05 0.72 6.44 -51.93 -0.33 0.38 16 42 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 43 H 0.04 1.28 7.42 -51.94 -0.39 0.90 16 44 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 344.81 15.07 5.20 5.20 Total: -1.00 -33.20 344.81 -8.45 -41.65 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -7.88 Total: -2.46 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: -0.05 Total: 0.62 kcal Atomic # 7 Polarization: -48.05 SS G_CDS: -0.77 Total: -48.83 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: 0.08 Total: -13.44 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.20 -8.45 -41.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399801507.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.318 kcal (2) G-P(sol) polarization free energy of solvation -33.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds