Wall clock time and date at job start Mon Mar 30 2020 05:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53010 * 109.47107 * 2 1 4 4 H 1.09005 * 110.41719 * 54.14218 * 3 2 1 5 5 C 1.54903 * 110.37382 * 176.45289 * 3 2 1 6 6 C 1.55138 * 101.65429 * 155.89743 * 5 3 2 7 7 H 1.09002 * 110.70625 * 82.90121 * 6 5 3 8 8 C 1.52997 * 110.71018 * 205.96478 * 6 5 3 9 9 C 1.54323 * 103.02033 * 324.34913 * 6 5 3 10 10 N 1.47444 * 107.23149 * 22.27848 * 9 6 5 11 11 C 1.46904 * 110.99844 * 123.25992 * 10 9 6 12 12 C 1.50700 * 109.47179 * 69.15725 * 11 10 9 13 13 O 1.21274 * 119.99777 * 0.02562 * 12 11 10 14 14 N 1.34778 * 119.99803 * 179.97438 * 12 11 10 15 15 C 1.46501 * 120.00212 * 0.02562 * 14 12 11 16 16 C 1.46498 * 119.99329 * 180.02562 * 14 12 11 17 17 C 1.50706 * 109.47177 * 90.00617 * 16 14 12 18 18 H 1.08004 * 119.99644 * 359.97438 * 17 16 14 19 19 C 1.37872 * 119.99862 * 179.97438 * 17 16 14 20 20 N 1.31517 * 120.00442 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 119.99942 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47008 * 59.99394 * 21 19 17 23 23 H 1.48495 * 109.47141 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.46955 * 299.99937 * 21 19 17 25 25 H 1.09004 * 109.47319 * 60.00040 * 1 2 3 26 26 H 1.09000 * 109.47410 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47276 * 300.00002 * 1 2 3 28 28 H 1.08994 * 109.47423 * 240.00136 * 2 1 3 29 29 H 1.09004 * 109.47319 * 119.99960 * 2 1 3 30 30 H 1.09004 * 110.98868 * 37.80892 * 5 3 2 31 31 H 1.09001 * 110.99195 * 273.98986 * 5 3 2 32 32 H 1.09002 * 109.47153 * 59.99929 * 8 6 5 33 33 H 1.09001 * 109.46832 * 300.00120 * 8 6 5 34 34 H 1.09004 * 109.47261 * 180.02562 * 8 6 5 35 35 H 1.08997 * 109.89189 * 141.68255 * 9 6 5 36 36 H 1.09001 * 109.88524 * 262.87756 * 9 6 5 37 37 H 1.09001 * 109.46933 * 189.16303 * 11 10 9 38 38 H 1.08999 * 109.47102 * 309.15836 * 11 10 9 39 39 H 1.08997 * 109.46723 * 89.99849 * 15 14 12 40 40 H 1.08992 * 109.46673 * 210.00135 * 15 14 12 41 41 H 1.09004 * 109.47112 * 330.00082 * 15 14 12 42 42 H 1.08999 * 109.46792 * 209.99921 * 16 14 12 43 43 H 1.08989 * 109.47743 * 329.99932 * 16 14 12 44 44 H 0.96998 * 119.99813 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6025 2.0006 0.8280 5 6 3.5862 1.4679 0.0898 6 6 3.9142 2.8467 -0.5411 7 1 3.8126 3.6423 0.1970 8 6 5.3211 2.8456 -1.1424 9 6 2.8479 2.9850 -1.6481 10 7 1.7257 2.0996 -1.2866 11 6 0.4676 2.8530 -1.1995 12 6 0.0538 3.3010 -2.5776 13 8 0.7392 3.0198 -3.5378 14 7 -1.0784 4.0131 -2.7431 15 6 -1.9066 4.3523 -1.5832 16 6 -1.4808 4.4480 -4.0829 17 6 -2.3519 3.3921 -4.7133 18 1 -2.5823 2.4874 -4.1704 19 6 -2.8547 3.5812 -5.9831 20 7 -2.5745 4.6831 -6.6441 21 14 -3.9339 2.2720 -6.7649 22 1 -5.1425 2.0623 -5.9279 23 1 -4.3418 2.7130 -8.1229 24 1 -3.1746 0.9998 -6.8654 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 4.0244 0.6577 -0.4929 31 1 3.9178 1.4245 1.1273 32 1 5.3851 2.0802 -1.9158 33 1 6.0502 2.6338 -0.3604 34 1 5.5304 3.8222 -1.5790 35 1 2.5026 4.0174 -1.7035 36 1 3.2670 2.6798 -2.6069 37 1 -0.3089 2.2159 -0.7761 38 1 0.6098 3.7252 -0.5615 39 1 -1.5818 5.3079 -1.1719 40 1 -2.9498 4.4246 -1.8905 41 1 -1.8042 3.5765 -0.8244 42 1 -2.0377 5.3822 -4.0096 43 1 -0.5935 4.6013 -4.6970 44 1 -2.9285 4.8162 -7.5373 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399801507.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:10 Heat of formation + Delta-G solvation = -59.584563 kcal Electronic energy + Delta-G solvation = -21633.233560 eV Core-core repulsion = 18584.353283 eV Total energy + Delta-G solvation = -3048.880277 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.14079 -39.68370 -36.53101 -34.99571 -34.69054 -33.67904 -30.52095 -29.66352 -28.08526 -27.19670 -26.10871 -24.63949 -23.55400 -21.52188 -20.56610 -19.89804 -18.69856 -17.88389 -17.49232 -17.08400 -16.57163 -15.94634 -15.80870 -15.37708 -14.70180 -14.45007 -14.33921 -14.11325 -13.95221 -13.75313 -13.52618 -13.50185 -13.42102 -13.30377 -13.13122 -12.78959 -12.59279 -12.56281 -12.28150 -12.18990 -12.04823 -11.73490 -11.61935 -11.59350 -11.49853 -11.20441 -10.64865 -10.49395 -9.40891 -9.17908 -8.22636 -6.37696 1.35179 1.40241 1.47354 1.87944 2.26948 2.41566 3.05513 3.06826 3.56418 3.72167 3.85109 3.94418 4.18451 4.22837 4.28227 4.34836 4.42960 4.47389 4.54592 4.58894 4.67928 4.69710 4.79946 4.87502 4.92532 4.93123 5.00229 5.09373 5.13927 5.16850 5.18956 5.21733 5.28632 5.39351 5.48347 5.51844 5.55863 5.83944 6.02436 6.06297 6.19227 6.70224 6.82278 7.28769 7.54784 8.84198 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.022679 B = 0.004753 C = 0.004469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.345161 B = 5890.149547 C = 6263.775270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.104 4.104 3 C 0.069 3.931 4 H 0.072 0.928 5 C -0.111 4.111 6 C -0.109 4.109 7 H 0.087 0.913 8 C -0.137 4.137 9 C 0.060 3.940 10 N -0.531 5.531 11 C 0.045 3.955 12 C 0.493 3.507 13 O -0.580 6.580 14 N -0.615 5.615 15 C 0.079 3.921 16 C 0.262 3.738 17 C -0.542 4.542 18 H 0.051 0.949 19 C 0.008 3.992 20 N -0.929 5.929 21 Si 0.967 3.033 22 H -0.258 1.258 23 H -0.277 1.277 24 H -0.280 1.280 25 H 0.036 0.964 26 H 0.057 0.943 27 H 0.068 0.932 28 H 0.049 0.951 29 H 0.089 0.911 30 H 0.071 0.929 31 H 0.101 0.899 32 H 0.047 0.953 33 H 0.076 0.924 34 H 0.051 0.949 35 H 0.031 0.969 36 H 0.049 0.951 37 H 0.122 0.878 38 H 0.081 0.919 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.090 0.910 42 H 0.023 0.977 43 H -0.006 1.006 44 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.168 -5.159 20.452 22.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.142 4.142 3 C -0.038 4.038 4 H 0.090 0.910 5 C -0.149 4.149 6 C -0.128 4.128 7 H 0.105 0.895 8 C -0.195 4.195 9 C -0.068 4.068 10 N -0.256 5.256 11 C -0.086 4.086 12 C 0.281 3.719 13 O -0.460 6.460 14 N -0.348 5.348 15 C -0.063 4.063 16 C 0.140 3.860 17 C -0.581 4.581 18 H 0.070 0.930 19 C -0.191 4.191 20 N -0.569 5.569 21 Si 0.792 3.208 22 H -0.183 1.183 23 H -0.202 1.202 24 H -0.205 1.205 25 H 0.055 0.945 26 H 0.076 0.924 27 H 0.087 0.913 28 H 0.068 0.932 29 H 0.108 0.892 30 H 0.089 0.911 31 H 0.119 0.881 32 H 0.066 0.934 33 H 0.095 0.905 34 H 0.070 0.930 35 H 0.050 0.950 36 H 0.067 0.933 37 H 0.139 0.861 38 H 0.098 0.902 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.109 0.891 42 H 0.041 0.959 43 H 0.012 0.988 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 9.393 -5.562 19.405 22.265 hybrid contribution -0.663 0.432 -0.793 1.121 sum 8.730 -5.130 18.612 21.188 Atomic orbital electron populations 1.21883 0.96333 1.01882 1.01286 1.21462 0.95738 0.94887 1.02101 1.22784 0.96231 0.95680 0.89087 0.91027 1.22803 0.93565 0.96385 1.02145 1.22403 0.95106 0.98657 0.96674 0.89501 1.21701 0.95185 1.01607 1.00972 1.22720 0.91320 0.94076 0.98641 1.63075 1.01092 1.29889 1.31494 1.22302 0.95058 0.98975 0.92279 1.21285 0.80606 0.77831 0.92156 1.90626 1.54720 1.56528 1.44095 1.48207 1.23436 1.53742 1.09445 1.21910 0.95640 1.01543 0.87208 1.18699 0.93526 0.94414 0.79325 1.21669 1.30677 1.04452 1.01285 0.93028 1.25865 0.97958 0.98008 0.97299 1.70048 1.46205 1.27484 1.13174 0.85473 0.78997 0.78565 0.77810 1.18271 1.20172 1.20535 0.94508 0.92397 0.91311 0.93209 0.89245 0.91051 0.88091 0.93368 0.90521 0.92957 0.94996 0.93299 0.86058 0.90175 0.91237 0.91437 0.89112 0.95929 0.98782 0.92395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.23 8.91 71.98 0.64 -2.59 16 2 C -0.10 -2.05 5.64 30.59 0.17 -1.88 16 3 C 0.07 1.43 2.55 45.39 0.12 1.55 16 4 H 0.07 1.24 7.81 -2.38 -0.02 1.22 16 5 C -0.11 -1.93 5.94 31.98 0.19 -1.74 16 6 C -0.11 -2.21 3.54 -9.61 -0.03 -2.24 16 7 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 8 C -0.14 -2.51 9.16 71.98 0.66 -1.85 16 9 C 0.06 1.83 5.20 86.65 0.45 2.28 16 10 N -0.53 -15.98 4.40 -865.13 -3.80 -19.79 16 11 C 0.04 1.36 3.18 85.56 0.27 1.63 16 12 C 0.49 21.73 7.30 87.66 0.64 22.37 16 13 O -0.58 -31.95 15.09 -3.01 -0.05 -32.00 16 14 N -0.62 -27.29 2.86 -851.16 -2.43 -29.73 16 15 C 0.08 2.43 10.24 127.77 1.31 3.74 16 16 C 0.26 14.72 5.16 85.64 0.44 15.16 16 17 C -0.54 -32.37 9.39 25.60 0.24 -32.13 16 18 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 19 C 0.01 0.45 5.46 84.65 0.46 0.91 16 20 N -0.93 -57.68 13.29 21.45 0.28 -57.40 16 21 Si 0.97 46.12 29.54 68.60 2.03 48.15 16 22 H -0.26 -11.47 7.11 99.48 0.71 -10.77 16 23 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 24 H -0.28 -13.42 7.11 99.48 0.71 -12.72 16 25 H 0.04 0.98 5.91 -2.38 -0.01 0.97 16 26 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 30 H 0.07 1.34 7.96 -2.39 -0.02 1.33 16 31 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.05 0.99 8.06 -2.39 -0.02 0.97 16 33 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 35 H 0.03 1.04 7.30 -2.39 -0.02 1.02 16 36 H 0.05 1.79 7.77 -2.39 -0.02 1.77 16 37 H 0.12 3.22 4.49 -2.39 -0.01 3.21 16 38 H 0.08 2.00 7.95 -2.39 -0.02 1.98 16 39 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.07 2.17 8.07 -2.39 -0.02 2.15 16 41 H 0.09 2.11 6.44 -2.39 -0.02 2.10 16 42 H 0.02 1.28 8.07 -2.39 -0.02 1.26 16 43 H -0.01 -0.39 7.42 -2.39 -0.02 -0.40 16 44 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 Total: -1.00 -77.14 344.81 2.54 -74.61 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: 0.94 Total: 10.95 kcal Atomic # 6 Polarization: -0.36 SS G_CDS: 5.56 Total: 5.20 kcal Atomic # 7 Polarization: -100.96 SS G_CDS: -5.95 Total: -106.91 kcal Atomic # 8 Polarization: -31.95 SS G_CDS: -0.05 Total: -32.00 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.15 kcal Total: -77.14 2.54 -74.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399801507.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.023 kcal (2) G-P(sol) polarization free energy of solvation -77.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds