Wall clock time and date at job start Mon Mar 30 2020 05:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52990 * 109.47406 * 2 1 4 4 H 1.09001 * 109.87993 * 56.10263 * 3 2 1 5 5 C 1.54319 * 109.88894 * 295.07324 * 3 2 1 6 6 C 1.55141 * 103.02141 * 218.30922 * 5 3 2 7 7 H 1.08998 * 110.99298 * 277.52549 * 6 5 3 8 8 C 1.52997 * 110.99073 * 153.74219 * 6 5 3 9 9 C 1.54906 * 101.65073 * 35.65425 * 6 5 3 10 10 N 1.47445 * 109.89080 * 177.30250 * 3 2 1 11 11 C 1.46902 * 110.99947 * 356.15155 * 10 3 2 12 12 C 1.50696 * 109.47229 * 176.98099 * 11 10 3 13 13 O 1.21282 * 119.99891 * 359.97438 * 12 11 10 14 14 N 1.34775 * 119.99968 * 179.97438 * 12 11 10 15 15 C 1.46494 * 120.00266 * 0.02562 * 14 12 11 16 16 C 1.46503 * 120.00079 * 179.97438 * 14 12 11 17 17 C 1.50698 * 109.47096 * 89.99701 * 16 14 12 18 18 H 1.07998 * 120.00124 * 0.02562 * 17 16 14 19 19 C 1.37883 * 119.99897 * 179.97438 * 17 16 14 20 20 N 1.31514 * 120.00014 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 119.99774 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47117 * 60.00364 * 21 19 17 23 23 H 1.48500 * 109.47250 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47281 * 300.00071 * 21 19 17 25 25 H 1.09000 * 109.46868 * 65.02327 * 1 2 3 26 26 H 1.08995 * 109.47490 * 185.02503 * 1 2 3 27 27 H 1.08998 * 109.47061 * 305.02696 * 1 2 3 28 28 H 1.09000 * 109.47056 * 239.99438 * 2 1 3 29 29 H 1.09010 * 109.46960 * 119.99900 * 2 1 3 30 30 H 1.08998 * 110.70685 * 99.92721 * 5 3 2 31 31 H 1.08995 * 110.70894 * 336.69324 * 5 3 2 32 32 H 1.08999 * 109.47049 * 60.00487 * 8 6 5 33 33 H 1.09002 * 109.47351 * 300.00106 * 8 6 5 34 34 H 1.09006 * 109.46977 * 179.97438 * 8 6 5 35 35 H 1.09001 * 110.37803 * 81.76002 * 9 6 5 36 36 H 1.09005 * 110.37043 * 204.10011 * 9 6 5 37 37 H 1.09004 * 109.46580 * 296.98191 * 11 10 3 38 38 H 1.08993 * 109.46982 * 56.97637 * 11 10 3 39 39 H 1.09004 * 109.47033 * 89.99524 * 15 14 12 40 40 H 1.08998 * 109.47369 * 209.99935 * 15 14 12 41 41 H 1.09003 * 109.47035 * 330.00093 * 15 14 12 42 42 H 1.08990 * 109.47185 * 210.00438 * 16 14 12 43 43 H 1.09010 * 109.46876 * 330.00277 * 16 14 12 44 44 H 0.96996 * 119.99484 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6246 1.9824 0.8508 5 6 1.6353 2.1423 -1.3144 6 6 2.8768 3.0125 -1.6437 7 1 2.8548 3.9501 -1.0885 8 6 2.9808 3.2719 -3.1480 9 6 4.0333 2.1047 -1.1560 10 7 3.5130 1.4536 0.0653 11 6 4.0443 0.0909 0.2024 12 6 5.5505 0.1355 0.1912 13 8 6.1249 1.1978 0.0795 14 7 6.2593 -1.0051 0.3054 15 6 5.5656 -2.2883 0.4398 16 6 7.7237 -0.9618 0.2940 17 6 8.2325 -0.8013 1.7033 18 1 7.5349 -0.7382 2.5254 19 6 9.5887 -0.7359 1.9434 20 7 10.4382 -0.8132 0.9424 21 14 10.2194 -0.5377 3.6905 22 1 9.7642 -1.6862 4.5144 23 1 11.7037 -0.4937 3.6789 24 1 9.6917 0.7251 4.2669 25 1 -0.3633 0.4339 -0.9316 26 1 -0.3634 -1.0236 0.0900 27 1 -0.3633 0.5898 0.8415 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8901 30 1 0.7556 2.7678 -1.1629 31 1 1.4578 1.4103 -2.1021 32 1 2.0872 3.7945 -3.4892 33 1 3.0698 2.3220 -3.6752 34 1 3.8593 3.8844 -3.3511 35 1 4.2735 1.3569 -1.9117 36 1 4.9129 2.7041 -0.9210 37 1 3.7005 -0.3401 1.1427 38 1 3.6927 -0.5214 -0.6279 39 1 5.3893 -2.7114 -0.5492 40 1 6.1793 -2.9738 1.0242 41 1 4.6117 -2.1345 0.9444 42 1 8.1112 -1.8886 -0.1290 43 1 8.0575 -0.1188 -0.3111 44 1 11.3922 -0.7669 1.1113 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399801510.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:14 Heat of formation + Delta-G solvation = -33.006839 kcal Electronic energy + Delta-G solvation = -21613.942153 eV Core-core repulsion = 18566.214373 eV Total energy + Delta-G solvation = -3047.727780 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.09739 -38.25940 -34.77153 -34.11021 -32.79792 -32.43826 -29.06434 -27.93773 -26.92865 -25.81939 -24.94920 -23.09837 -22.47919 -20.33319 -19.71632 -18.08876 -16.75314 -16.49340 -15.63117 -15.56981 -15.07088 -14.80900 -14.69089 -14.08738 -13.78240 -13.25995 -13.13522 -12.99683 -12.57290 -12.54780 -12.15572 -12.09344 -11.97460 -11.87420 -11.72909 -11.45716 -11.25965 -11.17060 -10.98828 -10.85430 -10.57787 -10.52578 -10.49200 -10.38973 -10.10736 -9.59041 -8.75115 -8.39609 -8.00454 -7.57555 -6.00567 -4.05020 3.34914 3.39169 3.41664 3.51130 3.80544 4.25152 4.48623 4.58328 4.61770 4.73428 5.03588 5.04814 5.15236 5.25797 5.34235 5.37023 5.40591 5.46879 5.51004 5.56939 5.63564 5.70698 5.73306 5.78035 5.84178 5.86507 5.92561 5.94259 6.01605 6.11055 6.21706 6.22941 6.38229 6.53136 7.01004 7.19203 7.24203 7.48092 7.60132 7.96328 8.27820 8.47718 8.95111 9.18343 9.60054 11.07493 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.025031 B = 0.004551 C = 0.004230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.358658 B = 6150.529121 C = 6617.029082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.144 4.144 3 C 0.072 3.928 4 H 0.085 0.915 5 C -0.131 4.131 6 C -0.108 4.108 7 H 0.082 0.918 8 C -0.139 4.139 9 C 0.057 3.943 10 N -0.508 5.508 11 C 0.031 3.969 12 C 0.502 3.498 13 O -0.526 6.526 14 N -0.605 5.605 15 C 0.084 3.916 16 C 0.247 3.753 17 C -0.525 4.525 18 H 0.056 0.944 19 C 0.061 3.939 20 N -0.896 5.896 21 Si 0.898 3.102 22 H -0.277 1.277 23 H -0.286 1.286 24 H -0.276 1.276 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.053 0.947 33 H 0.052 0.948 34 H 0.058 0.942 35 H 0.039 0.961 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.058 0.942 39 H 0.042 0.958 40 H 0.074 0.926 41 H 0.055 0.945 42 H 0.031 0.969 43 H 0.043 0.957 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.804 0.935 -5.442 20.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.182 4.182 3 C -0.036 4.036 4 H 0.103 0.897 5 C -0.170 4.170 6 C -0.127 4.127 7 H 0.100 0.900 8 C -0.197 4.197 9 C -0.070 4.070 10 N -0.232 5.232 11 C -0.100 4.100 12 C 0.288 3.712 13 O -0.403 6.403 14 N -0.339 5.339 15 C -0.060 4.060 16 C 0.128 3.872 17 C -0.564 4.564 18 H 0.075 0.925 19 C -0.141 4.141 20 N -0.535 5.535 21 Si 0.726 3.274 22 H -0.203 1.203 23 H -0.212 1.212 24 H -0.201 1.201 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.057 0.943 36 H 0.117 0.883 37 H 0.116 0.884 38 H 0.076 0.924 39 H 0.060 0.940 40 H 0.093 0.907 41 H 0.073 0.927 42 H 0.049 0.951 43 H 0.061 0.939 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -19.092 1.761 -5.102 19.840 hybrid contribution 0.159 -0.618 0.359 0.732 sum -18.933 1.143 -4.742 19.551 Atomic orbital electron populations 1.21735 0.95487 1.01554 1.01834 1.22172 0.96398 0.97266 1.02394 1.22555 0.87933 0.95249 0.97913 0.89704 1.22932 0.98128 0.98793 0.97128 1.22375 0.94965 0.99042 0.96315 0.89977 1.21689 1.01618 1.01566 0.94848 1.23160 0.97894 0.96654 0.89267 1.63538 1.04693 1.16262 1.38700 1.22342 0.94016 0.91344 1.02287 1.20236 0.88638 0.84407 0.77928 1.90641 1.71708 1.28929 1.48988 1.48147 1.09414 1.05145 1.71175 1.21615 0.97050 0.87094 1.00236 1.19251 0.72218 0.98113 0.97618 1.21407 0.91720 1.50329 0.92924 0.92527 1.24931 0.96686 0.95106 0.97364 1.69924 1.02453 1.50397 1.30770 0.86559 0.77517 0.78773 0.84577 1.20283 1.21202 1.20145 0.92757 0.92809 0.92589 0.91813 0.91044 0.91154 0.91494 0.92769 0.92849 0.92300 0.94284 0.88287 0.88420 0.92404 0.93962 0.90744 0.92658 0.95150 0.93929 0.92713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.65 37.16 0.36 -0.82 16 2 C -0.14 -1.42 4.04 -26.74 -0.11 -1.53 16 3 C 0.07 0.84 3.48 -66.73 -0.23 0.61 16 4 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 5 C -0.13 -1.35 5.05 -24.91 -0.13 -1.48 16 6 C -0.11 -1.28 3.63 -88.48 -0.32 -1.60 16 7 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 8 C -0.14 -1.43 9.31 37.16 0.35 -1.08 16 9 C 0.06 0.90 4.67 -2.30 -0.01 0.89 16 10 N -0.51 -7.93 5.10 -224.78 -1.15 -9.08 16 11 C 0.03 0.49 2.76 -4.98 -0.01 0.48 16 12 C 0.50 10.73 7.34 -10.99 -0.08 10.65 16 13 O -0.53 -13.43 13.64 5.56 0.08 -13.35 16 14 N -0.61 -13.12 2.86 -182.96 -0.52 -13.64 16 15 C 0.08 1.35 10.24 59.84 0.61 1.97 16 16 C 0.25 6.60 5.16 -5.19 -0.03 6.57 16 17 C -0.52 -15.20 9.39 -34.44 -0.32 -15.52 16 18 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 19 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 20 N -0.90 -27.02 13.29 55.43 0.74 -26.28 16 21 Si 0.90 22.25 29.54 -169.99 -5.02 17.23 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 24 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 25 H 0.05 0.41 7.54 -51.93 -0.39 0.01 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.64 6.78 -51.93 -0.35 0.29 16 29 H 0.07 0.72 6.49 -51.92 -0.34 0.39 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.66 7.68 -51.93 -0.40 0.26 16 32 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.05 0.54 8.07 -51.93 -0.42 0.13 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.04 0.63 7.58 -51.93 -0.39 0.24 16 36 H 0.10 1.87 6.85 -51.93 -0.36 1.51 16 37 H 0.10 1.41 6.11 -51.93 -0.32 1.10 16 38 H 0.06 0.80 6.36 -51.93 -0.33 0.47 16 39 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.07 1.23 8.07 -51.93 -0.42 0.81 16 41 H 0.05 0.72 6.44 -51.93 -0.33 0.39 16 42 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 43 H 0.04 1.28 7.42 -51.92 -0.39 0.89 16 44 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 340.66 15.07 5.13 5.13 Total: -1.00 -32.95 340.66 -8.55 -41.50 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -7.78 Total: -2.31 kcal Atomic # 6 Polarization: 0.83 SS G_CDS: -0.02 Total: 0.80 kcal Atomic # 7 Polarization: -48.07 SS G_CDS: -0.93 Total: -49.00 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: 0.08 Total: -13.35 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.95 -8.55 -41.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399801510.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.495 kcal (2) G-P(sol) polarization free energy of solvation -32.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds