Wall clock time and date at job start Mon Mar 30 2020 05:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52990 * 109.47406 * 2 1 4 4 H 1.09001 * 109.87993 * 56.10263 * 3 2 1 5 5 C 1.54319 * 109.88894 * 295.07324 * 3 2 1 6 6 C 1.55141 * 103.02141 * 218.30922 * 5 3 2 7 7 H 1.08998 * 110.99298 * 277.52549 * 6 5 3 8 8 C 1.52997 * 110.99073 * 153.74219 * 6 5 3 9 9 C 1.54906 * 101.65073 * 35.65425 * 6 5 3 10 10 N 1.47445 * 109.89080 * 177.30250 * 3 2 1 11 11 C 1.46902 * 110.99947 * 356.15155 * 10 3 2 12 12 C 1.50696 * 109.47229 * 176.98099 * 11 10 3 13 13 O 1.21282 * 119.99891 * 359.97438 * 12 11 10 14 14 N 1.34775 * 119.99968 * 179.97438 * 12 11 10 15 15 C 1.46494 * 120.00266 * 0.02562 * 14 12 11 16 16 C 1.46503 * 120.00079 * 179.97438 * 14 12 11 17 17 C 1.50698 * 109.47096 * 89.99701 * 16 14 12 18 18 H 1.07998 * 120.00124 * 0.02562 * 17 16 14 19 19 C 1.37883 * 119.99897 * 179.97438 * 17 16 14 20 20 N 1.31514 * 120.00014 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 119.99774 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47117 * 60.00364 * 21 19 17 23 23 H 1.48500 * 109.47250 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47281 * 300.00071 * 21 19 17 25 25 H 1.09000 * 109.46868 * 65.02327 * 1 2 3 26 26 H 1.08995 * 109.47490 * 185.02503 * 1 2 3 27 27 H 1.08998 * 109.47061 * 305.02696 * 1 2 3 28 28 H 1.09000 * 109.47056 * 239.99438 * 2 1 3 29 29 H 1.09010 * 109.46960 * 119.99900 * 2 1 3 30 30 H 1.08998 * 110.70685 * 99.92721 * 5 3 2 31 31 H 1.08995 * 110.70894 * 336.69324 * 5 3 2 32 32 H 1.08999 * 109.47049 * 60.00487 * 8 6 5 33 33 H 1.09002 * 109.47351 * 300.00106 * 8 6 5 34 34 H 1.09006 * 109.46977 * 179.97438 * 8 6 5 35 35 H 1.09001 * 110.37803 * 81.76002 * 9 6 5 36 36 H 1.09005 * 110.37043 * 204.10011 * 9 6 5 37 37 H 1.09004 * 109.46580 * 296.98191 * 11 10 3 38 38 H 1.08993 * 109.46982 * 56.97637 * 11 10 3 39 39 H 1.09004 * 109.47033 * 89.99524 * 15 14 12 40 40 H 1.08998 * 109.47369 * 209.99935 * 15 14 12 41 41 H 1.09003 * 109.47035 * 330.00093 * 15 14 12 42 42 H 1.08990 * 109.47185 * 210.00438 * 16 14 12 43 43 H 1.09010 * 109.46876 * 330.00277 * 16 14 12 44 44 H 0.96996 * 119.99484 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6246 1.9824 0.8508 5 6 1.6353 2.1423 -1.3144 6 6 2.8768 3.0125 -1.6437 7 1 2.8548 3.9501 -1.0885 8 6 2.9808 3.2719 -3.1480 9 6 4.0333 2.1047 -1.1560 10 7 3.5130 1.4536 0.0653 11 6 4.0443 0.0909 0.2024 12 6 5.5505 0.1355 0.1912 13 8 6.1249 1.1978 0.0795 14 7 6.2593 -1.0051 0.3054 15 6 5.5656 -2.2883 0.4398 16 6 7.7237 -0.9618 0.2940 17 6 8.2325 -0.8013 1.7033 18 1 7.5349 -0.7382 2.5254 19 6 9.5887 -0.7359 1.9434 20 7 10.4382 -0.8132 0.9424 21 14 10.2194 -0.5377 3.6905 22 1 9.7642 -1.6862 4.5144 23 1 11.7037 -0.4937 3.6789 24 1 9.6917 0.7251 4.2669 25 1 -0.3633 0.4339 -0.9316 26 1 -0.3634 -1.0236 0.0900 27 1 -0.3633 0.5898 0.8415 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8901 30 1 0.7556 2.7678 -1.1629 31 1 1.4578 1.4103 -2.1021 32 1 2.0872 3.7945 -3.4892 33 1 3.0698 2.3220 -3.6752 34 1 3.8593 3.8844 -3.3511 35 1 4.2735 1.3569 -1.9117 36 1 4.9129 2.7041 -0.9210 37 1 3.7005 -0.3401 1.1427 38 1 3.6927 -0.5214 -0.6279 39 1 5.3893 -2.7114 -0.5492 40 1 6.1793 -2.9738 1.0242 41 1 4.6117 -2.1345 0.9444 42 1 8.1112 -1.8886 -0.1290 43 1 8.0575 -0.1188 -0.3111 44 1 11.3922 -0.7669 1.1113 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399801510.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:13 Heat of formation + Delta-G solvation = -55.488376 kcal Electronic energy + Delta-G solvation = -21614.917025 eV Core-core repulsion = 18566.214373 eV Total energy + Delta-G solvation = -3048.702653 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.35855 -39.73793 -36.57066 -35.06780 -34.67308 -33.71030 -30.48949 -29.33554 -28.13876 -27.25237 -26.32209 -24.41415 -23.89996 -21.33484 -20.87984 -19.57016 -18.69455 -18.07849 -17.15979 -16.85092 -16.53110 -16.34832 -15.75259 -15.65395 -14.95257 -14.61366 -14.16421 -14.04121 -13.94593 -13.76893 -13.59371 -13.46576 -13.28167 -13.10546 -12.94915 -12.87421 -12.76800 -12.54401 -12.32290 -12.19901 -12.03936 -11.89222 -11.72711 -11.53533 -11.47639 -11.22389 -10.64914 -10.43694 -9.41923 -9.14936 -8.22826 -6.37856 1.35532 1.40477 1.47599 1.85182 2.27089 2.41831 3.05180 3.06548 3.59567 3.68471 3.81347 3.93656 4.14373 4.18433 4.26172 4.39638 4.42013 4.48538 4.54376 4.60581 4.65336 4.70122 4.83168 4.87133 4.90336 4.93493 4.99566 5.03478 5.09690 5.19763 5.20212 5.21352 5.30399 5.38127 5.41798 5.52392 5.55903 5.83243 5.99616 6.06079 6.14984 6.69875 6.80702 7.28443 7.52548 8.84015 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.025031 B = 0.004551 C = 0.004230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.358658 B = 6150.529121 C = 6617.029082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.141 4.141 3 C 0.070 3.930 4 H 0.086 0.914 5 C -0.120 4.120 6 C -0.103 4.103 7 H 0.077 0.923 8 C -0.136 4.136 9 C 0.060 3.940 10 N -0.534 5.534 11 C 0.049 3.951 12 C 0.489 3.511 13 O -0.581 6.581 14 N -0.613 5.613 15 C 0.079 3.921 16 C 0.262 3.738 17 C -0.543 4.543 18 H 0.052 0.948 19 C 0.008 3.992 20 N -0.929 5.929 21 Si 0.968 3.032 22 H -0.259 1.259 23 H -0.277 1.277 24 H -0.280 1.280 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.092 0.908 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.053 0.947 34 H 0.049 0.951 35 H 0.028 0.972 36 H 0.052 0.948 37 H 0.119 0.881 38 H 0.086 0.914 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.092 0.908 42 H 0.023 0.977 43 H -0.005 1.005 44 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.681 -0.037 -4.752 23.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.179 4.179 3 C -0.037 4.037 4 H 0.104 0.896 5 C -0.159 4.159 6 C -0.122 4.122 7 H 0.096 0.904 8 C -0.194 4.194 9 C -0.067 4.067 10 N -0.259 5.259 11 C -0.081 4.081 12 C 0.278 3.722 13 O -0.461 6.461 14 N -0.346 5.346 15 C -0.063 4.063 16 C 0.140 3.860 17 C -0.582 4.582 18 H 0.070 0.930 19 C -0.191 4.191 20 N -0.569 5.569 21 Si 0.792 3.208 22 H -0.183 1.183 23 H -0.202 1.202 24 H -0.205 1.205 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.111 0.889 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.046 0.954 36 H 0.070 0.930 37 H 0.137 0.863 38 H 0.104 0.896 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.110 0.890 42 H 0.041 0.959 43 H 0.013 0.987 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -22.018 0.746 -4.412 22.468 hybrid contribution 1.062 -0.297 0.113 1.109 sum -20.956 0.449 -4.299 21.397 Atomic orbital electron populations 1.21697 0.93741 1.02332 1.02383 1.22135 0.97876 0.95538 1.02374 1.22660 0.85197 0.97068 0.98822 0.89594 1.22904 0.97730 0.98736 0.96486 1.22340 0.94257 0.98360 0.97253 0.90412 1.21669 1.02365 1.01730 0.93586 1.22954 0.97918 0.96591 0.89256 1.63432 1.07348 1.16192 1.38911 1.22251 0.89139 0.92388 1.04333 1.21351 0.91147 0.83326 0.76405 1.90623 1.73325 1.30945 1.51203 1.48186 1.07667 1.07696 1.71034 1.21923 0.97834 0.84281 1.02311 1.18706 0.75825 0.95534 0.95901 1.21674 0.92214 1.50697 0.93598 0.93012 1.25865 0.96882 0.94446 1.01923 1.70046 1.02865 1.50885 1.33084 0.85467 0.77222 0.78927 0.79186 1.18304 1.20183 1.20526 0.92018 0.91906 0.92318 0.91704 0.91107 0.88903 0.90450 0.90420 0.92806 0.93225 0.95404 0.92957 0.86338 0.89614 0.91228 0.91450 0.88954 0.95905 0.98720 0.92384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.65 71.98 0.69 -1.03 16 2 C -0.14 -2.29 4.04 30.59 0.12 -2.16 16 3 C 0.07 1.47 3.48 45.26 0.16 1.62 16 4 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 5 C -0.12 -2.13 5.05 31.78 0.16 -1.97 16 6 C -0.10 -2.36 3.63 -9.41 -0.03 -2.40 16 7 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 8 C -0.14 -2.62 9.31 71.98 0.67 -1.95 16 9 C 0.06 1.95 4.67 86.77 0.41 2.36 16 10 N -0.53 -16.38 5.10 -865.07 -4.41 -20.79 16 11 C 0.05 1.49 2.76 85.56 0.24 1.73 16 12 C 0.49 21.38 7.34 87.66 0.64 22.03 16 13 O -0.58 -31.51 13.64 -3.04 -0.04 -31.56 16 14 N -0.61 -26.97 2.86 -851.15 -2.43 -29.41 16 15 C 0.08 2.38 10.24 127.77 1.31 3.69 16 16 C 0.26 14.63 5.16 85.63 0.44 15.07 16 17 C -0.54 -32.32 9.39 25.60 0.24 -32.08 16 18 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 19 C 0.01 0.46 5.46 84.66 0.46 0.92 16 20 N -0.93 -57.46 13.29 21.45 0.28 -57.18 16 21 Si 0.97 46.00 29.54 68.60 2.03 48.03 16 22 H -0.26 -11.46 7.11 99.48 0.71 -10.76 16 23 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 24 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 25 H 0.06 0.66 7.54 -2.39 -0.02 0.65 16 26 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.06 1.05 6.78 -2.39 -0.02 1.04 16 29 H 0.07 1.17 6.49 -2.38 -0.02 1.15 16 30 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.08 1.24 7.68 -2.39 -0.02 1.22 16 32 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.05 1.03 8.07 -2.39 -0.02 1.01 16 34 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 35 H 0.03 0.93 7.58 -2.39 -0.02 0.91 16 36 H 0.05 2.15 6.85 -2.38 -0.02 2.14 16 37 H 0.12 3.09 6.11 -2.39 -0.01 3.08 16 38 H 0.09 2.13 6.36 -2.39 -0.02 2.12 16 39 H 0.07 1.74 8.14 -2.39 -0.02 1.73 16 40 H 0.07 2.14 8.07 -2.39 -0.02 2.12 16 41 H 0.09 2.11 6.44 -2.39 -0.02 2.09 16 42 H 0.02 1.29 8.07 -2.39 -0.02 1.27 16 43 H -0.01 -0.34 7.42 -2.38 -0.02 -0.36 16 44 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -76.10 340.66 1.89 -74.22 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: 0.95 Total: 10.85 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: 5.51 Total: 5.84 kcal Atomic # 7 Polarization: -100.82 SS G_CDS: -6.56 Total: -107.37 kcal Atomic # 8 Polarization: -31.51 SS G_CDS: -0.04 Total: -31.56 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.03 kcal Total: -76.10 1.89 -74.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399801510.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.727 kcal (2) G-P(sol) polarization free energy of solvation -76.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds