Wall clock time and date at job start Mon Mar 30 2020 05:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47067 * 2 1 4 4 H 1.08999 * 110.36657 * 52.20464 * 3 2 1 5 5 C 1.54375 * 110.51403 * 289.78687 * 3 2 1 6 6 C 1.54263 * 105.06259 * 217.31725 * 5 3 2 7 7 H 1.09005 * 110.32073 * 118.89489 * 6 5 3 8 8 C 1.52996 * 110.32171 * 241.00174 * 6 5 3 9 9 C 1.54379 * 105.05694 * 359.97438 * 6 5 3 10 10 N 1.48556 * 104.59609 * 23.85376 * 9 6 5 11 11 C 1.46898 * 110.99962 * 200.95885 * 10 9 6 12 12 C 1.50701 * 109.47216 * 279.69445 * 11 10 9 13 13 O 1.21284 * 119.99659 * 359.97438 * 12 11 10 14 14 N 1.34775 * 120.00168 * 179.97438 * 12 11 10 15 15 C 1.46504 * 119.99900 * 0.02562 * 14 12 11 16 16 C 1.46498 * 119.99921 * 179.97438 * 14 12 11 17 17 C 1.50701 * 109.47229 * 269.99934 * 16 14 12 18 18 H 1.07994 * 120.00283 * 0.02562 * 17 16 14 19 19 C 1.37883 * 119.99618 * 179.97438 * 17 16 14 20 20 N 1.31512 * 120.00035 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99728 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47210 * 59.99822 * 21 19 17 23 23 H 1.48499 * 109.47275 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47207 * 300.00135 * 21 19 17 25 25 H 1.09001 * 109.46659 * 185.10549 * 1 2 3 26 26 H 1.09001 * 109.46450 * 305.09545 * 1 2 3 27 27 H 1.08990 * 109.47330 * 65.09902 * 1 2 3 28 28 H 1.09002 * 109.46704 * 240.00382 * 2 1 3 29 29 H 1.09001 * 109.47514 * 120.00509 * 2 1 3 30 30 H 1.09000 * 110.32506 * 336.21347 * 5 3 2 31 31 H 1.08997 * 110.32377 * 98.41897 * 5 3 2 32 32 H 1.08994 * 109.47484 * 60.00172 * 8 6 5 33 33 H 1.09003 * 109.46447 * 179.97438 * 8 6 5 34 34 H 1.08997 * 109.47491 * 299.99840 * 8 6 5 35 35 H 1.08999 * 110.41196 * 265.07005 * 9 6 5 36 36 H 1.08997 * 110.40879 * 142.63171 * 9 6 5 37 37 H 1.09005 * 109.47346 * 159.69518 * 11 10 9 38 38 H 1.08998 * 109.46983 * 39.69529 * 11 10 9 39 39 H 1.08999 * 109.46637 * 269.99594 * 15 14 12 40 40 H 1.08994 * 109.46784 * 29.99852 * 15 14 12 41 41 H 1.09002 * 109.46979 * 150.00309 * 15 14 12 42 42 H 1.09001 * 109.46974 * 30.00366 * 16 14 12 43 43 H 1.09004 * 109.46990 * 149.99915 * 16 14 12 44 44 H 0.97001 * 119.99028 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5761 2.0089 0.8075 5 6 1.7589 2.1157 -1.3605 6 6 2.9894 3.0066 -1.6288 7 1 3.4935 2.6906 -2.5422 8 6 2.5700 4.4741 -1.7348 9 6 3.9102 2.7971 -0.4075 10 7 3.5192 1.4697 0.1328 11 6 3.9244 1.3333 1.5382 12 6 5.3875 0.9788 1.6070 13 8 6.0294 0.8519 0.5858 14 7 5.9828 0.8029 2.8033 15 6 5.2073 0.9557 4.0369 16 6 7.4050 0.4579 2.8702 17 6 7.5594 -1.0411 2.8559 18 1 6.6856 -1.6735 2.8020 19 6 8.8164 -1.6052 2.9106 20 7 9.8804 -0.8350 2.9758 21 14 9.0079 -3.4632 2.8922 22 1 8.4240 -4.0087 1.6405 23 1 10.4495 -3.8130 2.9601 24 1 8.3022 -4.0452 4.0621 25 1 -0.3633 -1.0236 0.0915 26 1 -0.3632 0.5909 0.8409 27 1 -0.3633 0.4327 -0.9320 28 1 1.8933 -0.5138 -0.8901 29 1 1.8935 -0.5139 0.8899 30 1 1.6591 1.3626 -2.1421 31 1 0.8564 2.7242 -1.3025 32 1 2.1016 4.7864 -0.8015 33 1 3.4490 5.0903 -1.9238 34 1 1.8607 4.5911 -2.5542 35 1 3.7387 3.5757 0.3358 36 1 4.9554 2.7889 -0.7165 37 1 3.3372 0.5459 2.0109 38 1 3.7540 2.2757 2.0586 39 1 5.2553 1.9924 4.3701 40 1 4.1691 0.6820 3.8495 41 1 5.6207 0.3065 4.8087 42 1 7.9231 0.8848 2.0115 43 1 7.8333 0.8585 3.7890 44 1 10.7646 -1.2320 3.0146 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399801514.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:19 Heat of formation + Delta-G solvation = -39.866108 kcal Electronic energy + Delta-G solvation = -21392.889071 eV Core-core repulsion = 18344.863850 eV Total energy + Delta-G solvation = -3048.025220 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.76380 -38.28547 -34.68769 -33.92768 -33.14323 -32.47561 -28.91667 -27.98036 -26.89432 -25.77395 -25.00190 -23.11636 -22.17071 -20.53484 -19.68647 -18.34230 -16.48359 -16.33371 -15.88007 -15.49476 -15.14127 -14.83861 -14.37313 -13.95946 -13.92676 -13.39214 -13.19080 -13.05761 -12.52104 -12.37480 -12.36733 -12.12403 -11.94114 -11.79373 -11.64667 -11.50746 -11.13705 -11.08804 -10.92732 -10.81235 -10.74198 -10.51466 -10.45601 -10.38108 -10.10418 -9.58126 -8.85582 -8.38493 -8.19851 -7.55169 -5.99380 -4.03775 3.35376 3.39607 3.42517 3.55136 3.74351 4.27102 4.49855 4.53376 4.66698 4.91434 4.96890 5.13995 5.23084 5.27193 5.31264 5.34074 5.38937 5.45882 5.50640 5.54073 5.60820 5.63638 5.73336 5.76167 5.83541 5.94162 5.95116 5.96337 6.03597 6.12049 6.22917 6.27016 6.28653 6.34393 6.98493 7.02282 7.21142 7.50277 7.62517 7.97757 8.29412 8.51258 8.96756 9.23313 9.61320 11.08655 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.022850 B = 0.004466 C = 0.004200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.099965 B = 6268.227618 C = 6665.123805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.111 4.111 3 C 0.062 3.938 4 H 0.048 0.952 5 C -0.112 4.112 6 C -0.098 4.098 7 H 0.080 0.920 8 C -0.143 4.143 9 C 0.041 3.959 10 N -0.485 5.485 11 C 0.027 3.973 12 C 0.506 3.494 13 O -0.521 6.521 14 N -0.608 5.608 15 C 0.085 3.915 16 C 0.247 3.753 17 C -0.525 4.525 18 H 0.056 0.944 19 C 0.061 3.939 20 N -0.896 5.896 21 Si 0.898 3.102 22 H -0.276 1.276 23 H -0.286 1.286 24 H -0.277 1.277 25 H 0.054 0.946 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.071 0.929 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.052 0.948 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.039 0.961 36 H 0.090 0.910 37 H 0.095 0.905 38 H 0.057 0.943 39 H 0.042 0.958 40 H 0.053 0.947 41 H 0.073 0.927 42 H 0.043 0.957 43 H 0.030 0.970 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.996 8.138 -3.713 20.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.149 4.149 3 C -0.047 4.047 4 H 0.066 0.934 5 C -0.150 4.150 6 C -0.117 4.117 7 H 0.098 0.902 8 C -0.200 4.200 9 C -0.087 4.087 10 N -0.209 5.209 11 C -0.105 4.105 12 C 0.291 3.709 13 O -0.396 6.396 14 N -0.342 5.342 15 C -0.059 4.059 16 C 0.128 3.872 17 C -0.563 4.563 18 H 0.074 0.926 19 C -0.141 4.141 20 N -0.535 5.535 21 Si 0.725 3.275 22 H -0.202 1.202 23 H -0.212 1.212 24 H -0.203 1.203 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.057 0.943 36 H 0.108 0.892 37 H 0.113 0.887 38 H 0.075 0.925 39 H 0.060 0.940 40 H 0.072 0.928 41 H 0.092 0.908 42 H 0.061 0.939 43 H 0.048 0.952 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -18.154 7.621 -4.518 20.200 hybrid contribution -0.172 -0.432 0.758 0.889 sum -18.325 7.190 -3.760 20.041 Atomic orbital electron populations 1.21759 0.95829 1.01557 1.01545 1.21476 0.94834 0.95513 1.03102 1.22715 0.88546 0.96423 0.96990 0.93400 1.22424 0.97339 0.98501 0.96757 1.21889 0.95837 0.94956 0.99066 0.90168 1.21855 1.01172 0.95580 1.01413 1.23232 1.00984 0.88986 0.95454 1.65020 1.09255 1.30516 1.16095 1.22230 0.96283 1.01473 0.90469 1.20119 0.88281 0.78510 0.83956 1.90659 1.65221 1.50062 1.33687 1.48167 1.13048 1.68569 1.04411 1.21602 0.95350 1.00386 0.88596 1.19242 0.74147 0.95717 0.98072 1.21412 0.92479 0.91752 1.50707 0.92557 1.24932 0.95669 0.98371 0.95129 1.69927 0.98085 1.35085 1.50446 0.86564 0.76895 0.85363 0.78630 1.20152 1.21200 1.20300 0.92663 0.93034 0.92748 0.90987 0.91896 0.90945 0.91502 0.92916 0.92514 0.92610 0.94276 0.89185 0.88718 0.92521 0.93987 0.92785 0.90788 0.93936 0.95166 0.92724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.73 37.16 0.36 -0.94 16 2 C -0.11 -1.27 5.59 -26.73 -0.15 -1.42 16 3 C 0.06 0.73 2.24 -66.09 -0.15 0.59 16 4 H 0.05 0.53 7.99 -51.93 -0.42 0.12 16 5 C -0.11 -1.17 5.61 -25.35 -0.14 -1.31 16 6 C -0.10 -1.12 3.65 -89.24 -0.33 -1.44 16 7 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 8 C -0.14 -1.29 8.92 37.16 0.33 -0.96 16 9 C 0.04 0.59 5.62 -2.18 -0.01 0.58 16 10 N -0.49 -7.55 4.56 -223.60 -1.02 -8.56 16 11 C 0.03 0.43 3.86 -4.98 -0.02 0.41 16 12 C 0.51 10.96 7.58 -10.99 -0.08 10.87 16 13 O -0.52 -13.66 15.29 5.55 0.08 -13.58 16 14 N -0.61 -13.31 2.86 -182.95 -0.52 -13.83 16 15 C 0.09 1.38 10.24 59.85 0.61 1.99 16 16 C 0.25 6.66 5.16 -5.19 -0.03 6.63 16 17 C -0.52 -15.26 9.39 -34.44 -0.32 -15.58 16 18 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 19 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 20 N -0.90 -27.14 13.29 55.43 0.74 -26.40 16 21 Si 0.90 22.31 29.54 -169.99 -5.02 17.29 16 22 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.43 7.77 -51.93 -0.40 0.03 16 28 H 0.07 0.89 7.96 -51.93 -0.41 0.48 16 29 H 0.06 0.77 7.17 -51.93 -0.37 0.40 16 30 H 0.07 0.76 7.74 -51.93 -0.40 0.35 16 31 H 0.07 0.58 7.71 -51.93 -0.40 0.18 16 32 H 0.05 0.46 8.10 -51.93 -0.42 0.04 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.04 0.52 7.37 -51.93 -0.38 0.13 16 36 H 0.09 1.53 7.65 -51.93 -0.40 1.14 16 37 H 0.09 1.37 6.28 -51.93 -0.33 1.04 16 38 H 0.06 0.78 7.60 -51.93 -0.39 0.39 16 39 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.05 0.72 6.44 -51.93 -0.33 0.38 16 41 H 0.07 1.23 8.07 -51.93 -0.42 0.81 16 42 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 43 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 44 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 348.23 15.07 5.25 5.25 Total: -1.00 -33.58 348.23 -8.48 -42.06 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -7.97 Total: -3.31 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: -0.02 Total: 1.08 kcal Atomic # 7 Polarization: -47.99 SS G_CDS: -0.81 Total: -48.79 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: 0.08 Total: -13.58 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.58 -8.48 -42.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399801514.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.195 kcal (2) G-P(sol) polarization free energy of solvation -33.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds