Wall clock time and date at job start Mon Mar 30 2020 05:45:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53007 * 109.47347 * 2 1 4 4 H 1.09000 * 109.46869 * 55.00404 * 3 2 1 5 5 C 1.52995 * 109.46803 * 295.00299 * 3 2 1 6 6 C 1.52996 * 109.47121 * 175.00174 * 3 2 1 7 7 C 1.53001 * 109.47008 * 185.00244 * 6 3 2 8 8 H 1.09003 * 109.46827 * 304.99535 * 7 6 3 9 9 N 1.46902 * 109.47262 * 64.99899 * 7 6 3 10 10 C 1.50703 * 109.47181 * 185.00066 * 7 6 3 11 11 O 1.21281 * 119.99837 * 260.00008 * 10 7 6 12 12 N 1.34781 * 120.00021 * 79.99645 * 10 7 6 13 13 C 1.46499 * 119.99786 * 179.97438 * 12 10 7 14 14 C 1.50701 * 109.46992 * 90.00095 * 13 12 10 15 15 H 1.07998 * 120.00129 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99861 * 179.97438 * 14 13 12 17 17 N 1.31510 * 119.99913 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99734 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47432 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.46890 * 120.00210 * 18 16 14 21 21 H 1.48501 * 109.47062 * 240.00257 * 18 16 14 22 22 C 1.46504 * 119.99832 * 0.02562 * 12 10 7 23 23 C 1.53000 * 117.49414 * 188.62093 * 22 12 10 24 24 C 1.52992 * 117.49673 * 119.99922 * 22 12 10 25 25 H 1.08995 * 109.47184 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46614 * 299.99903 * 1 2 3 27 27 H 1.09003 * 109.47264 * 59.99774 * 1 2 3 28 28 H 1.09002 * 109.47306 * 239.99855 * 2 1 3 29 29 H 1.09003 * 109.47264 * 120.00226 * 2 1 3 30 30 H 1.09000 * 109.47493 * 299.99722 * 5 3 2 31 31 H 1.09001 * 109.47429 * 59.99842 * 5 3 2 32 32 H 1.09001 * 109.46722 * 179.97438 * 5 3 2 33 33 H 1.08999 * 109.47560 * 64.99796 * 6 3 2 34 34 H 1.09004 * 109.47410 * 304.99986 * 6 3 2 35 35 H 1.00900 * 110.99804 * 296.04602 * 9 7 6 36 36 H 1.00896 * 110.99615 * 60.00025 * 9 7 6 37 37 H 1.09002 * 109.47391 * 330.00086 * 13 12 10 38 38 H 1.09001 * 109.46813 * 210.00142 * 13 12 10 39 39 H 0.97002 * 119.99768 * 179.97438 * 17 16 14 40 40 H 1.09002 * 115.54922 * 334.32414 * 22 12 10 41 41 H 1.09001 * 117.49809 * 0.02562 * 23 22 12 42 42 H 1.09002 * 117.49583 * 145.01804 * 23 22 12 43 43 H 1.09001 * 117.49777 * 214.97436 * 24 22 12 44 44 H 1.08998 * 117.50180 * 359.97286 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6352 2.1265 -1.3073 6 6 3.5648 1.4443 0.1257 7 6 4.0645 2.8850 0.2511 8 1 3.6971 3.4716 -0.5910 9 7 3.5704 3.4671 1.5061 10 6 5.5715 2.8958 0.2514 11 8 6.1770 2.9919 1.2978 12 7 6.2463 2.7985 -0.9112 13 6 7.7112 2.8096 -0.9110 14 6 8.2242 1.3980 -0.7863 15 1 7.5286 0.5750 -0.7149 16 6 9.5816 1.1573 -0.7646 17 7 10.4287 2.1594 -0.8520 18 14 10.2174 -0.5924 -0.6108 19 1 9.0695 -1.5310 -0.5297 20 1 11.0448 -0.9246 -1.7984 21 1 11.0435 -0.7128 0.6174 22 6 5.5148 2.6829 -2.1753 23 6 6.3260 2.3738 -3.4352 24 6 5.7420 3.7723 -3.2251 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8901 27 1 -0.3634 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 2.0698 1.5875 -2.1492 31 1 0.5489 2.1252 -1.3969 32 1 1.9982 3.1543 -1.3071 33 1 4.0029 0.9835 -0.7596 34 1 3.8571 0.8800 1.0113 35 1 2.5634 3.5305 1.5035 36 1 3.8976 2.9407 2.3023 37 1 8.0700 3.4022 -0.0694 38 1 8.0714 3.2462 -1.8425 39 1 11.3837 1.9900 -0.8363 40 1 4.5150 2.2548 -2.1024 41 1 7.4039 2.2561 -3.3234 42 1 5.8600 1.7421 -4.1914 43 1 4.8919 4.0607 -3.8433 44 1 6.4354 4.5753 -2.9753 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400902556.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:09 Heat of formation + Delta-G solvation = -49.808277 kcal Electronic energy + Delta-G solvation = -21785.926400 eV Core-core repulsion = 18737.470055 eV Total energy + Delta-G solvation = -3048.456345 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.17672 -38.64680 -38.12933 -35.34936 -34.91457 -33.75933 -30.98529 -29.95528 -28.34373 -26.49533 -24.81102 -23.81394 -23.12868 -22.52746 -20.70476 -19.75643 -18.76592 -18.57382 -17.21694 -16.49940 -16.42295 -16.13702 -15.88784 -15.44088 -15.27460 -14.97131 -14.66385 -14.42092 -14.16832 -13.66670 -13.44909 -13.34361 -13.19073 -12.84198 -12.75512 -12.67634 -12.46657 -12.27311 -12.20664 -12.10837 -12.09264 -11.65109 -11.45199 -11.44582 -11.37869 -11.31639 -10.66086 -10.48417 -9.63417 -9.24132 -8.22508 -6.37058 1.33767 1.36178 1.47756 1.75376 2.19700 2.39714 3.06151 3.07518 3.50175 3.65979 3.82511 3.88084 3.95679 4.04519 4.07249 4.17958 4.22412 4.37849 4.52980 4.64355 4.73561 4.83254 4.85477 4.86947 4.93165 4.98334 5.04310 5.12406 5.20451 5.21942 5.24962 5.25789 5.27745 5.40505 5.53580 5.55504 5.59965 5.82399 6.04975 6.08084 6.60239 6.69791 6.80188 7.27822 7.48029 8.84381 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.018350 B = 0.005464 C = 0.005217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.549847 B = 5123.014927 C = 5365.408191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C -0.081 4.081 4 H 0.077 0.923 5 C -0.154 4.154 6 C -0.140 4.140 7 C 0.093 3.907 8 H 0.122 0.878 9 N -0.834 5.834 10 C 0.502 3.498 11 O -0.590 6.590 12 N -0.576 5.576 13 C 0.263 3.737 14 C -0.529 4.529 15 H 0.050 0.950 16 C 0.008 3.992 17 N -0.929 5.929 18 Si 0.965 3.035 19 H -0.267 1.267 20 H -0.268 1.268 21 H -0.283 1.283 22 C 0.054 3.946 23 C -0.181 4.181 24 C -0.180 4.180 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.065 0.935 28 H 0.060 0.940 29 H 0.051 0.949 30 H 0.059 0.941 31 H 0.073 0.927 32 H 0.060 0.940 33 H 0.069 0.931 34 H 0.049 0.951 35 H 0.360 0.640 36 H 0.344 0.656 37 H -0.010 1.010 38 H 0.025 0.975 39 H 0.266 0.734 40 H 0.154 0.846 41 H 0.074 0.926 42 H 0.128 0.872 43 H 0.139 0.861 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.696 -2.174 -4.945 22.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.158 4.158 3 C -0.099 4.099 4 H 0.096 0.904 5 C -0.211 4.211 6 C -0.180 4.180 7 C -0.022 4.022 8 H 0.140 0.860 9 N -0.368 5.368 10 C 0.291 3.709 11 O -0.470 6.470 12 N -0.306 5.306 13 C 0.142 3.858 14 C -0.568 4.568 15 H 0.069 0.931 16 C -0.191 4.191 17 N -0.569 5.569 18 Si 0.790 3.210 19 H -0.192 1.192 20 H -0.193 1.193 21 H -0.209 1.209 22 C -0.050 4.050 23 C -0.219 4.219 24 C -0.219 4.219 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.092 0.908 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.068 0.932 35 H 0.177 0.823 36 H 0.158 0.842 37 H 0.008 0.992 38 H 0.043 0.957 39 H 0.075 0.925 40 H 0.171 0.829 41 H 0.092 0.908 42 H 0.146 0.854 43 H 0.157 0.843 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -20.780 -1.416 -4.611 21.332 hybrid contribution 0.937 -1.583 0.540 1.917 sum -19.843 -2.999 -4.071 20.477 Atomic orbital electron populations 1.21791 0.94523 1.01900 1.02422 1.21561 0.96903 0.95683 1.01692 1.21110 0.91891 0.97138 0.99800 0.90429 1.21998 1.02432 1.00508 0.96172 1.22362 0.97910 0.95194 1.02487 1.21329 0.88681 0.96296 0.95872 0.86032 1.58505 1.16306 1.59007 1.02934 1.21319 0.91350 0.75491 0.82780 1.90612 1.71743 1.51756 1.32923 1.47691 1.07180 1.69853 1.05834 1.18685 0.75691 0.96081 0.95382 1.21600 0.91921 0.93035 1.50246 0.93126 1.25828 0.96946 1.01674 0.94632 1.70064 1.02824 1.32847 1.51178 0.85399 0.78307 0.79330 0.77970 1.19159 1.19345 1.20864 1.22063 0.97541 1.05135 0.80235 1.23304 1.00181 0.99601 0.98790 1.23454 1.04187 0.91980 1.02234 0.92675 0.92503 0.91564 0.92089 0.93052 0.92178 0.90806 0.92127 0.91236 0.93187 0.82350 0.84209 0.99203 0.95717 0.92476 0.82927 0.90755 0.85370 0.84326 0.91012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.67 71.98 0.70 -1.15 16 2 C -0.12 -1.93 5.40 30.59 0.17 -1.76 16 3 C -0.08 -1.33 2.26 -10.79 -0.02 -1.35 16 4 H 0.08 1.15 6.65 -2.39 -0.02 1.14 16 5 C -0.15 -2.05 8.71 71.98 0.63 -1.42 16 6 C -0.14 -3.44 3.99 30.59 0.12 -3.31 16 7 C 0.09 2.72 2.23 44.17 0.10 2.82 16 8 H 0.12 3.01 5.36 -2.39 -0.01 3.00 16 9 N -0.83 -22.84 8.94 -171.79 -1.53 -24.38 16 10 C 0.50 22.00 6.92 87.66 0.61 22.60 16 11 O -0.59 -32.23 15.83 -3.03 -0.05 -32.28 16 12 N -0.58 -25.47 2.79 -802.13 -2.24 -27.71 16 13 C 0.26 14.65 4.46 85.63 0.38 15.03 16 14 C -0.53 -31.02 9.19 25.60 0.24 -30.78 16 15 H 0.05 2.96 7.81 -2.91 -0.02 2.94 16 16 C 0.01 0.46 5.46 84.66 0.46 0.92 16 17 N -0.93 -57.20 13.29 21.45 0.28 -56.91 16 18 Si 0.97 45.68 29.54 68.60 2.03 47.71 16 19 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 20 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 21 H -0.28 -13.30 7.11 99.48 0.71 -12.60 16 22 C 0.05 1.74 5.46 44.99 0.25 1.99 16 23 C -0.18 -5.73 9.72 30.59 0.30 -5.43 16 24 C -0.18 -4.99 10.12 30.59 0.31 -4.68 16 25 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 27 H 0.07 0.71 6.56 -2.39 -0.02 0.69 16 28 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.07 0.78 6.56 -2.39 -0.02 0.76 16 32 H 0.06 0.81 6.46 -2.39 -0.02 0.79 16 33 H 0.07 1.81 6.58 -2.39 -0.02 1.80 16 34 H 0.05 1.42 8.14 -2.38 -0.02 1.40 16 35 H 0.36 6.96 7.44 -89.69 -0.67 6.29 16 36 H 0.34 10.32 8.58 -89.70 -0.77 9.55 16 37 H -0.01 -0.66 7.42 -2.39 -0.02 -0.68 16 38 H 0.02 1.40 6.32 -2.39 -0.02 1.39 16 39 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 40 H 0.15 3.75 5.43 -2.39 -0.01 3.74 16 41 H 0.07 3.07 6.29 -2.39 -0.02 3.05 16 42 H 0.13 3.08 8.14 -2.39 -0.02 3.06 16 43 H 0.14 2.59 8.14 -2.39 -0.02 2.57 16 44 H 0.07 2.35 8.12 -2.39 -0.02 2.33 16 Total: -1.00 -75.47 344.37 2.27 -73.19 By element: Atomic # 1 Polarization: 27.33 SS G_CDS: -0.44 Total: 26.90 kcal Atomic # 6 Polarization: -10.75 SS G_CDS: 4.22 Total: -6.52 kcal Atomic # 7 Polarization: -105.50 SS G_CDS: -3.49 Total: -109.00 kcal Atomic # 8 Polarization: -32.23 SS G_CDS: -0.05 Total: -32.28 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -75.47 2.27 -73.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400902556.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.384 kcal (2) G-P(sol) polarization free energy of solvation -75.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds