Wall clock time and date at job start Mon Mar 30 2020 05:45:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.46802 * 2 1 4 4 H 1.09004 * 109.47361 * 55.00816 * 3 2 1 5 5 C 1.52998 * 109.47305 * 295.00365 * 3 2 1 6 6 C 1.53003 * 109.46941 * 175.00371 * 3 2 1 7 7 C 1.52999 * 109.47331 * 294.43105 * 6 3 2 8 8 H 1.09007 * 109.46708 * 55.27961 * 7 6 3 9 9 N 1.46899 * 109.47356 * 295.28150 * 7 6 3 10 10 C 1.50699 * 109.47208 * 175.27520 * 7 6 3 11 11 O 1.21281 * 119.99734 * 100.00365 * 10 7 6 12 12 N 1.34778 * 120.00518 * 280.00126 * 10 7 6 13 13 C 1.46493 * 120.00443 * 180.02562 * 12 10 7 14 14 C 1.50694 * 109.47402 * 89.99981 * 13 12 10 15 15 H 1.08005 * 120.00144 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00161 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99997 * 179.97438 * 16 14 13 18 18 Si 1.86797 * 120.00043 * 359.97438 * 16 14 13 19 19 H 1.48501 * 109.47144 * 90.00384 * 18 16 14 20 20 H 1.48498 * 109.47470 * 210.00379 * 18 16 14 21 21 H 1.48497 * 109.47206 * 330.00449 * 18 16 14 22 22 C 1.46505 * 119.99700 * 359.97438 * 12 10 7 23 23 C 1.52990 * 117.49884 * 188.62035 * 22 12 10 24 24 C 1.52995 * 60.00314 * 252.51177 * 23 22 12 25 25 H 1.09000 * 109.47271 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46806 * 299.99367 * 1 2 3 27 27 H 1.08994 * 109.47823 * 59.99753 * 1 2 3 28 28 H 1.09004 * 109.46806 * 240.00633 * 2 1 3 29 29 H 1.09000 * 109.47595 * 120.00592 * 2 1 3 30 30 H 1.09001 * 109.47313 * 305.75222 * 5 3 2 31 31 H 1.09006 * 109.47172 * 185.75607 * 5 3 2 32 32 H 1.09001 * 109.47305 * 65.75896 * 5 3 2 33 33 H 1.09006 * 109.47299 * 54.43162 * 6 3 2 34 34 H 1.09002 * 109.47265 * 174.43266 * 6 3 2 35 35 H 1.00908 * 110.99498 * 305.80171 * 9 7 6 36 36 H 1.00895 * 111.00146 * 69.75808 * 9 7 6 37 37 H 1.09000 * 109.47146 * 210.00523 * 13 12 10 38 38 H 1.09003 * 109.47207 * 329.99941 * 13 12 10 39 39 H 0.97005 * 119.99877 * 179.97438 * 17 16 14 40 40 H 1.09000 * 115.54921 * 334.33326 * 22 12 10 41 41 H 1.08993 * 117.50362 * 0.02562 * 23 22 12 42 42 H 1.09003 * 117.50173 * 145.02682 * 23 22 12 43 43 H 1.08999 * 117.49991 * 252.51009 * 24 23 22 44 44 H 1.09001 * 117.51926 * 107.48324 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6350 2.1266 -1.3073 6 6 3.5648 1.4444 0.1256 7 6 3.9645 0.8868 1.4931 8 1 3.5225 -0.1008 1.6261 9 7 3.4807 1.7860 2.5492 10 6 5.4656 0.7801 1.5728 11 8 6.1042 1.6328 2.1525 12 7 6.0985 -0.2629 1.0001 13 6 7.5577 -0.3669 1.0780 14 6 7.9411 -1.1380 2.3147 15 1 7.1744 -1.5128 2.9767 16 6 9.2705 -1.3642 2.6016 17 7 9.6051 -2.0368 3.6812 18 14 10.5966 -0.7154 1.4571 19 1 10.9936 0.6505 1.8836 20 1 11.7782 -1.6133 1.5091 21 1 10.0721 -0.6675 0.0687 22 6 5.3271 -1.2933 0.3004 23 6 6.0739 -2.5495 -0.1521 24 6 5.6252 -1.5130 -1.1841 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.9831 1.5316 -2.1517 31 1 2.0841 3.1188 -1.3524 32 1 0.5496 2.2169 -1.3492 33 1 3.9949 0.8230 -0.6600 34 1 3.9363 2.4643 0.0265 35 1 3.8005 2.7305 2.3943 36 1 2.4749 1.7519 2.6204 37 1 7.9327 -0.8855 0.1957 38 1 7.9913 0.6321 1.1239 39 1 10.5404 -2.1962 3.8829 40 1 4.2947 -1.4122 0.6294 41 1 7.1391 -2.6097 0.0710 42 1 5.5330 -3.4954 -0.1209 43 1 4.7891 -1.7767 -1.8317 44 1 6.3951 -0.8906 -1.6403 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000400902561.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:12 Heat of formation + Delta-G solvation = -21.693195 kcal Electronic energy + Delta-G solvation = -21855.201251 eV Core-core repulsion = 18807.964067 eV Total energy + Delta-G solvation = -3047.237184 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.74480 -37.62939 -36.75643 -33.90659 -33.13139 -31.99847 -30.34503 -28.81223 -27.42457 -24.75102 -23.33818 -22.35475 -22.02888 -21.32376 -19.82185 -18.12812 -17.46511 -16.83519 -15.67921 -15.41779 -15.19202 -14.95341 -14.27547 -14.14751 -14.06775 -13.60012 -13.51139 -13.38759 -12.70653 -12.49338 -12.35064 -12.26204 -11.85792 -11.72900 -11.61947 -11.52981 -11.09588 -10.92989 -10.81145 -10.74684 -10.60936 -10.50278 -10.45445 -10.16841 -9.98824 -9.45979 -9.02079 -8.55691 -8.39722 -7.55240 -6.04825 -4.02831 3.29662 3.29977 3.35437 3.37913 3.68238 4.28408 4.41632 4.55270 4.64350 4.68165 4.77553 5.00454 5.05953 5.17043 5.23644 5.26795 5.29315 5.32267 5.34870 5.41162 5.49630 5.55781 5.65141 5.75461 5.81058 5.89329 5.90894 5.92689 6.05568 6.10830 6.18895 6.23603 6.34190 6.60445 6.73023 6.95364 7.21536 7.37188 7.60554 7.63919 8.29474 8.51625 8.99096 9.05200 9.55273 11.08655 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.025720 B = 0.005286 C = 0.004945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.375549 B = 5295.959579 C = 5660.541545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.091 4.091 4 H 0.067 0.933 5 C -0.146 4.146 6 C -0.146 4.146 7 C 0.076 3.924 8 H 0.099 0.901 9 N -0.825 5.825 10 C 0.519 3.481 11 O -0.528 6.528 12 N -0.566 5.566 13 C 0.215 3.785 14 C -0.521 4.521 15 H 0.076 0.924 16 C 0.073 3.927 17 N -0.897 5.897 18 Si 0.872 3.128 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.267 1.267 22 C 0.078 3.922 23 C -0.173 4.173 24 C -0.205 4.205 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.055 0.945 33 H 0.077 0.923 34 H 0.067 0.933 35 H 0.348 0.652 36 H 0.339 0.661 37 H 0.030 0.970 38 H 0.035 0.965 39 H 0.264 0.736 40 H 0.118 0.882 41 H 0.116 0.884 42 H 0.095 0.905 43 H 0.093 0.907 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.385 3.561 -12.076 21.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.109 4.109 4 H 0.086 0.914 5 C -0.203 4.203 6 C -0.185 4.185 7 C -0.039 4.039 8 H 0.117 0.883 9 N -0.356 5.356 10 C 0.306 3.694 11 O -0.403 6.403 12 N -0.296 5.296 13 C 0.094 3.906 14 C -0.560 4.560 15 H 0.094 0.906 16 C -0.130 4.130 17 N -0.535 5.535 18 Si 0.700 3.300 19 H -0.199 1.199 20 H -0.211 1.211 21 H -0.192 1.192 22 C -0.028 4.028 23 C -0.211 4.211 24 C -0.244 4.244 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.096 0.904 34 H 0.085 0.915 35 H 0.162 0.838 36 H 0.153 0.847 37 H 0.048 0.952 38 H 0.053 0.947 39 H 0.074 0.926 40 H 0.135 0.865 41 H 0.134 0.866 42 H 0.113 0.887 43 H 0.111 0.889 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -16.423 3.516 -11.128 20.147 hybrid contribution 0.328 0.606 -1.257 1.433 sum -16.094 4.121 -12.385 20.722 Atomic orbital electron populations 1.21808 0.95946 1.01541 1.01697 1.21684 0.95819 0.96267 1.02458 1.21165 0.94923 0.96458 0.98393 0.91419 1.21851 1.01035 1.00327 0.97136 1.22393 0.95674 1.02272 0.98205 1.21446 0.93825 0.98536 0.90120 0.88333 1.58438 1.15328 1.13404 1.48415 1.20132 0.88939 0.81711 0.78651 1.90654 1.67650 1.40487 1.41552 1.47399 1.08313 1.21303 1.52595 1.19650 0.75404 0.97802 0.97696 1.21295 0.93344 1.34101 1.07252 0.90631 1.24840 0.98275 0.94749 0.95090 1.69900 1.17604 1.40599 1.25422 0.86912 0.81975 0.79461 0.81701 1.19937 1.21062 1.19192 1.21502 0.95784 0.92871 0.92605 1.23330 1.03244 0.92886 1.01641 1.23417 1.03819 1.04328 0.92798 0.92850 0.92840 0.92702 0.91671 0.91610 0.92577 0.92847 0.92587 0.90393 0.91467 0.83813 0.84705 0.95227 0.94704 0.92626 0.86490 0.86582 0.88664 0.88875 0.88952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.67 37.16 0.36 -0.75 16 2 C -0.12 -1.04 5.28 -26.73 -0.14 -1.18 16 3 C -0.09 -0.80 2.27 -90.62 -0.21 -1.00 16 4 H 0.07 0.58 6.76 -51.93 -0.35 0.22 16 5 C -0.15 -1.16 8.80 37.16 0.33 -0.84 16 6 C -0.15 -1.69 4.18 -26.73 -0.11 -1.80 16 7 C 0.08 1.12 2.32 -68.87 -0.16 0.96 16 8 H 0.10 1.37 4.59 -51.93 -0.24 1.13 16 9 N -0.82 -11.74 8.78 -5.65 -0.05 -11.79 16 10 C 0.52 10.82 6.92 -10.99 -0.08 10.75 16 11 O -0.53 -13.38 15.97 5.56 0.09 -13.29 16 12 N -0.57 -11.78 2.79 -167.48 -0.47 -12.24 16 13 C 0.21 5.31 3.53 -5.20 -0.02 5.29 16 14 C -0.52 -15.11 9.74 -34.44 -0.34 -15.45 16 15 H 0.08 2.44 8.06 -52.48 -0.42 2.01 16 16 C 0.07 2.13 5.47 -17.82 -0.10 2.04 16 17 N -0.90 -27.92 13.96 55.43 0.77 -27.15 16 18 Si 0.87 21.77 27.47 -169.99 -4.67 17.10 16 19 H -0.27 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 22 C 0.08 1.27 5.13 -67.93 -0.35 0.92 16 23 C -0.17 -2.76 9.72 -26.74 -0.26 -3.02 16 24 C -0.20 -2.79 10.11 -26.73 -0.27 -3.06 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.05 0.37 6.70 -51.93 -0.35 0.02 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.60 6.28 -51.93 -0.33 0.27 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.39 6.85 -51.93 -0.36 0.04 16 33 H 0.08 0.93 7.27 -51.93 -0.38 0.55 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.35 4.95 8.73 -39.29 -0.34 4.61 16 36 H 0.34 3.70 7.69 -39.29 -0.30 3.40 16 37 H 0.03 0.70 5.39 -51.93 -0.28 0.42 16 38 H 0.04 0.93 6.85 -51.93 -0.36 0.58 16 39 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 40 H 0.12 1.59 6.27 -51.93 -0.33 1.27 16 41 H 0.12 2.23 6.29 -51.93 -0.33 1.90 16 42 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 43 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.09 1.36 8.13 -51.93 -0.42 0.93 16 LS Contribution 342.16 15.07 5.16 5.16 Total: -1.00 -33.91 342.16 -7.83 -41.74 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -7.32 Total: 7.63 kcal Atomic # 6 Polarization: -5.81 SS G_CDS: -1.34 Total: -7.15 kcal Atomic # 7 Polarization: -51.45 SS G_CDS: 0.26 Total: -51.19 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: 0.09 Total: -13.29 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.67 Total: 17.10 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.91 -7.83 -41.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400902561.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.046 kcal (2) G-P(sol) polarization free energy of solvation -33.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds