Wall clock time and date at job start Mon Mar 30 2020 05:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.46802 * 2 1 4 4 H 1.09004 * 109.47361 * 55.00816 * 3 2 1 5 5 C 1.52998 * 109.47305 * 295.00365 * 3 2 1 6 6 C 1.53003 * 109.46941 * 175.00371 * 3 2 1 7 7 C 1.52999 * 109.47331 * 294.43105 * 6 3 2 8 8 H 1.09007 * 109.46708 * 55.27961 * 7 6 3 9 9 N 1.46899 * 109.47356 * 295.28150 * 7 6 3 10 10 C 1.50699 * 109.47208 * 175.27520 * 7 6 3 11 11 O 1.21281 * 119.99734 * 100.00365 * 10 7 6 12 12 N 1.34778 * 120.00518 * 280.00126 * 10 7 6 13 13 C 1.46493 * 120.00443 * 180.02562 * 12 10 7 14 14 C 1.50694 * 109.47402 * 89.99981 * 13 12 10 15 15 H 1.08005 * 120.00144 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00161 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99997 * 179.97438 * 16 14 13 18 18 Si 1.86797 * 120.00043 * 359.97438 * 16 14 13 19 19 H 1.48501 * 109.47144 * 90.00384 * 18 16 14 20 20 H 1.48498 * 109.47470 * 210.00379 * 18 16 14 21 21 H 1.48497 * 109.47206 * 330.00449 * 18 16 14 22 22 C 1.46505 * 119.99700 * 359.97438 * 12 10 7 23 23 C 1.52990 * 117.49884 * 188.62035 * 22 12 10 24 24 C 1.52995 * 60.00314 * 252.51177 * 23 22 12 25 25 H 1.09000 * 109.47271 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46806 * 299.99367 * 1 2 3 27 27 H 1.08994 * 109.47823 * 59.99753 * 1 2 3 28 28 H 1.09004 * 109.46806 * 240.00633 * 2 1 3 29 29 H 1.09000 * 109.47595 * 120.00592 * 2 1 3 30 30 H 1.09001 * 109.47313 * 305.75222 * 5 3 2 31 31 H 1.09006 * 109.47172 * 185.75607 * 5 3 2 32 32 H 1.09001 * 109.47305 * 65.75896 * 5 3 2 33 33 H 1.09006 * 109.47299 * 54.43162 * 6 3 2 34 34 H 1.09002 * 109.47265 * 174.43266 * 6 3 2 35 35 H 1.00908 * 110.99498 * 305.80171 * 9 7 6 36 36 H 1.00895 * 111.00146 * 69.75808 * 9 7 6 37 37 H 1.09000 * 109.47146 * 210.00523 * 13 12 10 38 38 H 1.09003 * 109.47207 * 329.99941 * 13 12 10 39 39 H 0.97005 * 119.99877 * 179.97438 * 17 16 14 40 40 H 1.09000 * 115.54921 * 334.33326 * 22 12 10 41 41 H 1.08993 * 117.50362 * 0.02562 * 23 22 12 42 42 H 1.09003 * 117.50173 * 145.02682 * 23 22 12 43 43 H 1.08999 * 117.49991 * 252.51009 * 24 23 22 44 44 H 1.09001 * 117.51926 * 107.48324 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6350 2.1266 -1.3073 6 6 3.5648 1.4444 0.1256 7 6 3.9645 0.8868 1.4931 8 1 3.5225 -0.1008 1.6261 9 7 3.4807 1.7860 2.5492 10 6 5.4656 0.7801 1.5728 11 8 6.1042 1.6328 2.1525 12 7 6.0985 -0.2629 1.0001 13 6 7.5577 -0.3669 1.0780 14 6 7.9411 -1.1380 2.3147 15 1 7.1744 -1.5128 2.9767 16 6 9.2705 -1.3642 2.6016 17 7 9.6051 -2.0368 3.6812 18 14 10.5966 -0.7154 1.4571 19 1 10.9936 0.6505 1.8836 20 1 11.7782 -1.6133 1.5091 21 1 10.0721 -0.6675 0.0687 22 6 5.3271 -1.2933 0.3004 23 6 6.0739 -2.5495 -0.1521 24 6 5.6252 -1.5130 -1.1841 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.9831 1.5316 -2.1517 31 1 2.0841 3.1188 -1.3524 32 1 0.5496 2.2169 -1.3492 33 1 3.9949 0.8230 -0.6600 34 1 3.9363 2.4643 0.0265 35 1 3.8005 2.7305 2.3943 36 1 2.4749 1.7519 2.6204 37 1 7.9327 -0.8855 0.1957 38 1 7.9913 0.6321 1.1239 39 1 10.5404 -2.1962 3.8829 40 1 4.2947 -1.4122 0.6294 41 1 7.1391 -2.6097 0.0710 42 1 5.5330 -3.4954 -0.1209 43 1 4.7891 -1.7767 -1.8317 44 1 6.3951 -0.8906 -1.6403 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400902561.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:11 Heat of formation + Delta-G solvation = -45.878625 kcal Electronic energy + Delta-G solvation = -21856.250010 eV Core-core repulsion = 18807.964067 eV Total energy + Delta-G solvation = -3048.285943 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.20605 -38.67079 -38.14576 -35.27170 -34.80595 -33.86071 -31.06518 -30.55738 -28.61053 -25.96764 -24.51225 -23.76195 -23.23699 -22.76203 -20.57512 -19.64008 -19.13020 -18.78387 -17.25321 -16.51436 -16.37156 -16.21946 -15.79833 -15.47149 -15.05948 -14.85847 -14.78970 -14.62607 -14.32902 -13.71648 -13.62057 -13.45984 -13.03361 -12.88447 -12.76403 -12.60114 -12.45788 -12.38266 -12.24688 -12.16521 -11.83738 -11.64522 -11.59385 -11.36451 -11.34883 -11.22860 -10.84137 -10.54259 -9.59807 -9.21080 -8.34218 -6.38332 1.28393 1.32999 1.40647 1.73930 2.17029 2.28509 2.98961 3.05968 3.51841 3.66152 3.80779 3.89283 3.93048 3.99860 4.12035 4.17812 4.22770 4.39925 4.64597 4.67521 4.70597 4.78076 4.82764 4.84475 4.86995 4.89633 4.96203 5.03739 5.20150 5.22622 5.24263 5.29061 5.32760 5.37805 5.43880 5.55107 5.59093 5.60720 6.10646 6.24623 6.60480 6.62684 6.72418 7.21297 7.43258 8.83010 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.025720 B = 0.005286 C = 0.004945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.375549 B = 5295.959579 C = 5660.541545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.125 4.125 3 C -0.083 4.083 4 H 0.072 0.928 5 C -0.144 4.144 6 C -0.133 4.133 7 C 0.092 3.908 8 H 0.112 0.888 9 N -0.839 5.839 10 C 0.504 3.496 11 O -0.587 6.587 12 N -0.573 5.573 13 C 0.227 3.773 14 C -0.525 4.525 15 H 0.026 0.974 16 C 0.013 3.987 17 N -0.944 5.944 18 Si 0.943 3.057 19 H -0.277 1.277 20 H -0.272 1.272 21 H -0.241 1.241 22 C 0.054 3.946 23 C -0.189 4.189 24 C -0.167 4.167 25 H 0.055 0.945 26 H 0.053 0.947 27 H 0.061 0.939 28 H 0.071 0.929 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.048 0.952 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.056 0.944 35 H 0.347 0.653 36 H 0.359 0.641 37 H 0.048 0.952 38 H 0.013 0.987 39 H 0.268 0.732 40 H 0.146 0.854 41 H 0.077 0.923 42 H 0.121 0.879 43 H 0.138 0.862 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.232 3.512 -14.981 24.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C -0.101 4.101 4 H 0.090 0.910 5 C -0.201 4.201 6 C -0.173 4.173 7 C -0.023 4.023 8 H 0.130 0.870 9 N -0.373 5.373 10 C 0.293 3.707 11 O -0.466 6.466 12 N -0.302 5.302 13 C 0.104 3.896 14 C -0.563 4.563 15 H 0.044 0.956 16 C -0.185 4.185 17 N -0.584 5.584 18 Si 0.766 3.234 19 H -0.203 1.203 20 H -0.197 1.197 21 H -0.164 1.164 22 C -0.050 4.050 23 C -0.227 4.227 24 C -0.205 4.205 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.090 0.910 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.075 0.925 35 H 0.161 0.839 36 H 0.176 0.824 37 H 0.065 0.935 38 H 0.031 0.969 39 H 0.077 0.923 40 H 0.163 0.837 41 H 0.096 0.904 42 H 0.140 0.860 43 H 0.156 0.844 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -18.333 3.433 -14.071 23.364 hybrid contribution 0.846 0.574 -0.265 1.056 sum -17.487 4.007 -14.336 22.964 Atomic orbital electron populations 1.21793 0.95058 1.01905 1.02082 1.21688 0.96591 0.95557 1.02402 1.21113 0.92440 0.97300 0.99269 0.91003 1.21833 1.01841 1.00007 0.96468 1.22300 0.97846 1.01343 0.95847 1.21328 0.89100 0.99627 0.92258 0.87013 1.58363 1.16955 1.13300 1.48704 1.21338 0.91514 0.80666 0.77181 1.90610 1.69419 1.42568 1.44045 1.47460 1.07109 1.22603 1.53043 1.19246 0.78522 0.95674 0.96128 1.21438 0.92518 1.34274 1.08111 0.95599 1.25799 1.00999 0.94853 0.96881 1.70051 1.18470 1.42253 1.27666 0.85789 0.78701 0.78374 0.80554 1.20290 1.19728 1.16375 1.21969 0.96423 0.91945 0.94646 1.23334 1.01317 0.94447 1.03584 1.23478 1.04306 1.01441 0.91310 0.92547 0.92810 0.92002 0.91009 0.92360 0.92232 0.93238 0.91331 0.90154 0.92491 0.83930 0.82415 0.93457 0.96901 0.92306 0.83680 0.90437 0.86041 0.84443 0.89835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.67 71.98 0.70 -1.01 16 2 C -0.13 -1.66 5.28 30.59 0.16 -1.50 16 3 C -0.08 -1.21 2.27 -10.79 -0.02 -1.24 16 4 H 0.07 1.02 6.76 -2.39 -0.02 1.00 16 5 C -0.14 -1.84 8.80 71.98 0.63 -1.20 16 6 C -0.13 -2.83 4.18 30.59 0.13 -2.71 16 7 C 0.09 2.62 2.32 44.17 0.10 2.72 16 8 H 0.11 2.89 4.59 -2.38 -0.01 2.88 16 9 N -0.84 -23.43 8.78 -171.80 -1.51 -24.94 16 10 C 0.50 21.34 6.92 87.66 0.61 21.95 16 11 O -0.59 -30.95 15.97 -3.03 -0.05 -30.99 16 12 N -0.57 -24.01 2.79 -802.17 -2.24 -26.25 16 13 C 0.23 11.41 3.53 85.63 0.30 11.72 16 14 C -0.52 -31.73 9.74 25.60 0.25 -31.48 16 15 H 0.03 1.77 8.06 -2.91 -0.02 1.74 16 16 C 0.01 0.76 5.47 84.65 0.46 1.22 16 17 N -0.94 -60.93 13.96 21.45 0.30 -60.63 16 18 Si 0.94 45.56 27.47 68.60 1.88 47.44 16 19 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 20 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 21 H -0.24 -10.47 6.54 99.48 0.65 -9.82 16 22 C 0.05 1.65 5.13 44.99 0.23 1.88 16 23 C -0.19 -5.70 9.72 30.59 0.30 -5.41 16 24 C -0.17 -3.96 10.11 30.59 0.31 -3.65 16 25 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.05 0.60 8.14 -2.38 -0.02 0.58 16 27 H 0.06 0.62 6.70 -2.39 -0.02 0.60 16 28 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 29 H 0.06 0.87 6.28 -2.39 -0.01 0.85 16 30 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 32 H 0.07 0.72 6.85 -2.39 -0.02 0.71 16 33 H 0.08 1.68 7.27 -2.38 -0.02 1.66 16 34 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.35 9.87 8.73 -89.69 -0.78 9.09 16 36 H 0.36 7.28 7.69 -89.70 -0.69 6.59 16 37 H 0.05 2.21 5.39 -2.39 -0.01 2.20 16 38 H 0.01 0.71 6.85 -2.39 -0.02 0.69 16 39 H 0.27 16.05 8.31 -92.70 -0.77 15.28 16 40 H 0.15 3.54 6.27 -2.39 -0.01 3.53 16 41 H 0.08 2.98 6.29 -2.39 -0.02 2.96 16 42 H 0.12 2.96 8.14 -2.39 -0.02 2.94 16 43 H 0.14 2.12 8.14 -2.39 -0.02 2.10 16 44 H 0.08 2.19 8.13 -2.39 -0.02 2.17 16 Total: -1.00 -78.80 342.16 2.01 -76.79 By element: Atomic # 1 Polarization: 27.80 SS G_CDS: -0.53 Total: 27.28 kcal Atomic # 6 Polarization: -12.86 SS G_CDS: 4.16 Total: -8.70 kcal Atomic # 7 Polarization: -108.36 SS G_CDS: -3.45 Total: -111.81 kcal Atomic # 8 Polarization: -30.95 SS G_CDS: -0.05 Total: -30.99 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 1.88 Total: 47.44 kcal Total: -78.80 2.01 -76.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400902561.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.910 kcal (2) G-P(sol) polarization free energy of solvation -78.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds