Wall clock time and date at job start Mon Mar 30 2020 05:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47587 * 2 1 4 4 H 1.09002 * 109.47005 * 305.00259 * 3 2 1 5 5 C 1.53001 * 109.47069 * 64.99812 * 3 2 1 6 6 C 1.52996 * 109.47484 * 185.00238 * 3 2 1 7 7 C 1.53005 * 109.47310 * 174.99823 * 6 3 2 8 8 H 1.09000 * 109.46591 * 55.00125 * 7 6 3 9 9 N 1.46893 * 109.47046 * 294.99894 * 7 6 3 10 10 C 1.50700 * 109.47080 * 174.99812 * 7 6 3 11 11 O 1.21279 * 120.00113 * 100.00242 * 10 7 6 12 12 N 1.34784 * 119.99961 * 280.00010 * 10 7 6 13 13 C 1.46494 * 119.99635 * 180.02562 * 12 10 7 14 14 C 1.50694 * 109.47248 * 90.00174 * 13 12 10 15 15 H 1.07999 * 119.99904 * 359.97438 * 14 13 12 16 16 C 1.37883 * 120.00385 * 179.97438 * 14 13 12 17 17 N 1.31510 * 120.00419 * 179.97438 * 16 14 13 18 18 Si 1.86802 * 119.99411 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47279 * 90.00270 * 18 16 14 20 20 H 1.48505 * 109.46775 * 209.99777 * 18 16 14 21 21 H 1.48495 * 109.47628 * 329.99523 * 18 16 14 22 22 C 1.46493 * 119.99864 * 359.72839 * 12 10 7 23 23 C 1.52999 * 117.49927 * 188.62167 * 22 12 10 24 24 C 1.52996 * 60.00039 * 252.50855 * 23 22 12 25 25 H 1.08996 * 109.47106 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46482 * 300.00220 * 1 2 3 27 27 H 1.08997 * 109.46977 * 59.99726 * 1 2 3 28 28 H 1.09000 * 109.47212 * 239.99672 * 2 1 3 29 29 H 1.09006 * 109.47096 * 120.00067 * 2 1 3 30 30 H 1.09002 * 109.46843 * 60.00347 * 5 3 2 31 31 H 1.08999 * 109.46777 * 180.02562 * 5 3 2 32 32 H 1.08992 * 109.47331 * 300.00407 * 5 3 2 33 33 H 1.08999 * 109.47240 * 54.99979 * 6 3 2 34 34 H 1.08999 * 109.47055 * 294.99707 * 6 3 2 35 35 H 1.00899 * 110.99966 * 299.99901 * 9 7 6 36 36 H 1.00906 * 111.00310 * 63.95622 * 9 7 6 37 37 H 1.09003 * 109.47006 * 210.00121 * 13 12 10 38 38 H 1.09004 * 109.47665 * 329.99813 * 13 12 10 39 39 H 0.96993 * 119.99970 * 180.02562 * 17 16 14 40 40 H 1.09000 * 115.55112 * 334.32349 * 22 12 10 41 41 H 1.09002 * 117.49532 * 0.02562 * 23 22 12 42 42 H 1.08999 * 117.50267 * 145.01351 * 23 22 12 43 43 H 1.09004 * 117.49802 * 252.50535 * 24 23 22 44 44 H 1.09004 * 117.52113 * 107.48117 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 1.6354 2.1265 1.3073 6 6 3.5649 1.4442 -0.1258 7 6 4.0647 2.8849 -0.2512 8 1 3.6973 3.4714 0.5909 9 7 3.5706 3.4670 -1.5061 10 6 5.5716 2.8956 -0.2515 11 8 6.1771 2.9918 -1.2979 12 7 6.2465 2.7984 0.9111 13 6 7.7114 2.8094 0.9108 14 6 8.2031 4.2284 1.0352 15 1 7.4952 5.0408 1.1070 16 6 9.5568 4.4895 1.0575 17 7 9.9860 5.7279 1.1656 18 14 10.7812 3.0842 0.9328 19 1 11.1049 2.8350 -0.4949 20 1 12.0218 3.4421 1.6664 21 1 10.1904 1.8586 1.5277 22 6 5.5150 2.6883 2.1756 23 6 6.3242 2.7843 3.4705 24 6 5.7537 1.4370 3.0232 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3632 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5139 0.8900 30 1 2.0700 1.5874 2.1491 31 1 1.9984 3.1543 1.3071 32 1 0.5492 2.1252 1.3969 33 1 3.8571 0.8799 -1.0114 34 1 4.0030 0.9835 0.7596 35 1 3.8977 2.9407 -2.3023 36 1 2.5635 3.5305 -1.5035 37 1 8.0793 2.2222 1.7522 38 1 8.0779 2.3782 -0.0209 39 1 10.9382 5.9116 1.1810 40 1 4.5111 3.1128 2.1765 41 1 7.4008 2.9299 3.3815 42 1 5.8529 3.2723 4.3236 43 1 4.9068 1.0386 3.5820 44 1 6.4546 0.6955 2.6397 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000400902563.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:15 Heat of formation + Delta-G solvation = -22.020101 kcal Electronic energy + Delta-G solvation = -21777.461494 eV Core-core repulsion = 18730.210135 eV Total energy + Delta-G solvation = -3047.251359 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.75093 -37.61418 -36.77120 -34.05736 -33.14991 -32.01021 -30.18194 -28.68847 -27.36768 -25.33248 -23.05486 -22.35767 -22.01638 -21.16466 -19.91162 -18.13024 -17.51444 -16.84149 -15.70356 -15.44542 -15.14891 -14.82495 -14.48425 -14.22663 -13.99797 -13.78104 -13.44933 -13.21664 -12.66799 -12.57429 -12.46318 -12.16446 -11.93787 -11.76284 -11.66185 -11.25160 -11.10108 -10.92724 -10.82144 -10.76027 -10.63554 -10.61821 -10.45968 -10.17059 -9.99357 -9.46553 -8.99522 -8.56283 -8.43112 -7.56497 -6.05347 -4.03452 3.27884 3.29314 3.35037 3.37491 3.67383 4.27198 4.41113 4.55805 4.65117 4.67752 4.77540 5.02822 5.06067 5.12976 5.22393 5.24159 5.28601 5.29284 5.36563 5.39464 5.47366 5.57619 5.70328 5.79138 5.81464 5.86200 5.90114 5.90796 6.01024 6.09117 6.22658 6.24404 6.33957 6.60000 6.72460 6.94614 7.22029 7.35798 7.61105 7.63279 8.27949 8.50923 8.97828 9.03587 9.54644 11.08137 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.027073 B = 0.005088 C = 0.004751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.973799 B = 5502.175515 C = 5892.569679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.090 4.090 4 H 0.068 0.932 5 C -0.153 4.153 6 C -0.146 4.146 7 C 0.076 3.924 8 H 0.100 0.900 9 N -0.826 5.826 10 C 0.519 3.481 11 O -0.529 6.529 12 N -0.565 5.565 13 C 0.215 3.785 14 C -0.522 4.522 15 H 0.076 0.924 16 C 0.073 3.927 17 N -0.896 5.896 18 Si 0.872 3.128 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.267 1.267 22 C 0.078 3.922 23 C -0.173 4.173 24 C -0.205 4.205 25 H 0.051 0.949 26 H 0.057 0.943 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.349 0.651 36 H 0.339 0.661 37 H 0.030 0.970 38 H 0.035 0.965 39 H 0.264 0.736 40 H 0.118 0.882 41 H 0.116 0.884 42 H 0.095 0.905 43 H 0.093 0.907 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.035 -11.679 2.539 21.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.156 4.156 3 C -0.109 4.109 4 H 0.086 0.914 5 C -0.210 4.210 6 C -0.186 4.186 7 C -0.039 4.039 8 H 0.117 0.883 9 N -0.358 5.358 10 C 0.306 3.694 11 O -0.405 6.405 12 N -0.295 5.295 13 C 0.095 3.905 14 C -0.561 4.561 15 H 0.094 0.906 16 C -0.129 4.129 17 N -0.535 5.535 18 Si 0.699 3.301 19 H -0.199 1.199 20 H -0.210 1.210 21 H -0.192 1.192 22 C -0.028 4.028 23 C -0.211 4.211 24 C -0.243 4.243 25 H 0.070 0.930 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.096 0.904 35 H 0.163 0.837 36 H 0.153 0.847 37 H 0.048 0.952 38 H 0.053 0.947 39 H 0.074 0.926 40 H 0.136 0.864 41 H 0.134 0.866 42 H 0.114 0.886 43 H 0.111 0.889 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -17.090 -10.849 2.163 20.358 hybrid contribution 0.311 -1.464 -0.055 1.498 sum -16.778 -12.313 2.107 20.918 Atomic orbital electron populations 1.21822 0.95960 1.01399 1.01871 1.21559 0.95734 0.96270 1.02079 1.21157 0.94883 0.96317 0.98546 0.91400 1.21971 1.01240 1.00746 0.97092 1.22390 0.95475 0.97254 1.03447 1.21453 0.93310 0.94377 0.94788 0.88255 1.58513 1.14686 1.59136 1.03425 1.20121 0.88792 0.76808 0.83708 1.90654 1.69952 1.48830 1.31084 1.47392 1.07850 1.70534 1.03747 1.19654 0.75146 0.98473 0.97274 1.21297 0.92736 0.91593 1.50439 0.90620 1.24842 0.98077 0.95398 0.94631 1.69893 1.14717 1.18490 1.50395 0.86913 0.81272 0.82984 0.78888 1.19930 1.21048 1.19185 1.21508 0.96605 1.01176 0.83500 1.23333 1.02428 0.98608 0.96713 1.23418 1.03767 0.92366 1.04796 0.93008 0.92445 0.92870 0.92152 0.91872 0.92354 0.92309 0.92476 0.91572 0.90410 0.83690 0.84704 0.95213 0.94688 0.92612 0.86439 0.86583 0.88648 0.88862 0.88953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.67 37.16 0.36 -0.72 16 2 C -0.12 -0.96 5.40 -26.73 -0.14 -1.11 16 3 C -0.09 -0.80 2.26 -90.62 -0.20 -1.00 16 4 H 0.07 0.58 6.65 -51.93 -0.35 0.23 16 5 C -0.15 -1.27 8.71 37.16 0.32 -0.95 16 6 C -0.15 -1.70 4.24 -26.73 -0.11 -1.81 16 7 C 0.08 1.12 2.33 -68.87 -0.16 0.96 16 8 H 0.10 1.39 4.64 -51.93 -0.24 1.15 16 9 N -0.83 -11.82 8.93 -5.66 -0.05 -11.87 16 10 C 0.52 10.81 6.92 -10.98 -0.08 10.73 16 11 O -0.53 -13.36 15.83 5.56 0.09 -13.27 16 12 N -0.56 -11.76 2.79 -167.48 -0.47 -12.23 16 13 C 0.21 5.30 3.53 -5.20 -0.02 5.29 16 14 C -0.52 -15.13 9.74 -34.44 -0.34 -15.46 16 15 H 0.08 2.44 8.06 -52.49 -0.42 2.01 16 16 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 17 N -0.90 -27.90 13.96 55.43 0.77 -27.12 16 18 Si 0.87 21.74 27.47 -169.99 -4.67 17.08 16 19 H -0.27 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 22 C 0.08 1.26 5.15 -67.94 -0.35 0.91 16 23 C -0.17 -2.75 9.72 -26.73 -0.26 -3.01 16 24 C -0.20 -2.79 10.12 -26.73 -0.27 -3.06 16 25 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 26 H 0.06 0.38 6.56 -51.93 -0.34 0.04 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.52 6.46 -51.93 -0.34 0.18 16 32 H 0.06 0.42 6.56 -51.93 -0.34 0.07 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.08 0.93 7.29 -51.93 -0.38 0.55 16 35 H 0.35 5.09 8.58 -39.29 -0.34 4.76 16 36 H 0.34 3.71 7.45 -39.29 -0.29 3.42 16 37 H 0.03 0.70 5.41 -51.93 -0.28 0.42 16 38 H 0.04 0.93 6.85 -51.93 -0.36 0.58 16 39 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 40 H 0.12 1.61 6.27 -51.93 -0.33 1.28 16 41 H 0.12 2.22 6.28 -51.93 -0.33 1.90 16 42 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 43 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 44 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 341.65 15.07 5.15 5.15 Total: -1.00 -33.77 341.65 -7.82 -41.59 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -7.29 Total: 7.86 kcal Atomic # 6 Polarization: -5.84 SS G_CDS: -1.35 Total: -7.19 kcal Atomic # 7 Polarization: -51.48 SS G_CDS: 0.26 Total: -51.22 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: 0.09 Total: -13.27 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.67 Total: 17.08 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.77 -7.82 -41.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400902563.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.568 kcal (2) G-P(sol) polarization free energy of solvation -33.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds