Wall clock time and date at job start Mon Mar 30 2020 05:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47046 * 2 1 4 4 H 1.08996 * 109.47208 * 305.00636 * 3 2 1 5 5 C 1.53005 * 109.46948 * 65.00006 * 3 2 1 6 6 C 1.52999 * 109.47078 * 185.00239 * 3 2 1 7 7 C 1.52992 * 109.47286 * 65.92847 * 6 3 2 8 8 H 1.09001 * 109.46913 * 304.66133 * 7 6 3 9 9 N 1.46894 * 109.47501 * 64.65873 * 7 6 3 10 10 C 1.50708 * 109.47118 * 184.66415 * 7 6 3 11 11 O 1.21279 * 119.99782 * 259.99402 * 10 7 6 12 12 N 1.34770 * 120.00017 * 79.99467 * 10 7 6 13 13 C 1.46505 * 119.99791 * 179.97438 * 12 10 7 14 14 C 1.50701 * 109.47343 * 270.00060 * 13 12 10 15 15 H 1.07997 * 119.99778 * 0.02562 * 14 13 12 16 16 C 1.37878 * 119.99813 * 179.97438 * 14 13 12 17 17 N 1.31517 * 119.99552 * 180.02562 * 16 14 13 18 18 Si 1.86795 * 120.00086 * 0.02562 * 16 14 13 19 19 H 1.48495 * 109.47356 * 89.99899 * 18 16 14 20 20 H 1.48503 * 109.47021 * 210.00034 * 18 16 14 21 21 H 1.48506 * 109.47260 * 330.00035 * 18 16 14 22 22 C 1.46500 * 120.00234 * 0.02562 * 12 10 7 23 23 C 1.53005 * 117.49796 * 188.74779 * 22 12 10 24 24 C 1.52994 * 117.50487 * 120.08420 * 22 12 10 25 25 H 1.08999 * 109.47240 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47320 * 299.99470 * 1 2 3 27 27 H 1.09000 * 109.47566 * 59.99648 * 1 2 3 28 28 H 1.09001 * 109.47320 * 240.00530 * 2 1 3 29 29 H 1.09000 * 109.47566 * 120.00352 * 2 1 3 30 30 H 1.09000 * 109.46692 * 54.23641 * 5 3 2 31 31 H 1.09003 * 109.47072 * 174.23248 * 5 3 2 32 32 H 1.08993 * 109.47016 * 294.23716 * 5 3 2 33 33 H 1.09003 * 109.47059 * 305.91899 * 6 3 2 34 34 H 1.08998 * 109.47104 * 185.92843 * 6 3 2 35 35 H 1.00907 * 110.99912 * 60.00102 * 9 7 6 36 36 H 1.00900 * 111.00417 * 183.95365 * 9 7 6 37 37 H 1.09004 * 109.46589 * 150.00368 * 13 12 10 38 38 H 1.08996 * 109.46693 * 30.00519 * 13 12 10 39 39 H 0.96999 * 119.99815 * 180.02562 * 17 16 14 40 40 H 1.09007 * 115.55099 * 334.40754 * 22 12 10 41 41 H 1.08995 * 117.49835 * 359.97438 * 23 22 12 42 42 H 1.08997 * 117.50075 * 145.01710 * 23 22 12 43 43 H 1.08997 * 117.50077 * 214.97690 * 24 22 12 44 44 H 1.09004 * 117.49957 * 359.97305 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6052 1.9816 -0.8417 5 6 1.6351 2.1265 1.3074 6 6 3.5647 1.4444 -0.1258 7 6 3.9641 0.8952 -1.4968 8 1 3.5224 -0.0917 -1.6355 9 7 3.4794 1.8005 -2.5471 10 6 5.4652 0.7896 -1.5778 11 8 6.1032 1.6460 -2.1526 12 7 6.0987 -0.2565 -1.0116 13 6 7.5580 -0.3594 -1.0909 14 6 7.9411 -1.1230 -2.3324 15 1 7.1743 -1.4942 -2.9961 16 6 9.2705 -1.3469 -2.6213 17 7 9.6048 -2.0128 -3.7050 18 14 10.5968 -0.7043 -1.4735 19 1 10.9035 -1.7323 -0.4467 20 1 11.8236 -0.4029 -2.2542 21 1 10.1177 0.5334 -0.8071 22 6 5.3281 -1.2914 -0.3177 23 6 6.1089 -2.3399 0.4773 24 6 5.4362 -2.7243 -0.8429 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.9831 1.5313 2.1517 31 1 2.0844 3.1187 1.3526 32 1 0.5497 2.2168 1.3493 33 1 3.9945 0.8180 0.6559 34 1 3.9368 2.4634 -0.0202 35 1 3.8748 2.7227 -2.4404 36 1 3.6741 1.4276 -3.4642 37 1 7.9335 -0.8832 -0.2118 38 1 7.9910 0.6401 -1.1309 39 1 10.5401 -2.1706 -3.9081 40 1 4.3647 -0.9726 0.0804 41 1 7.1959 -2.2599 0.4837 42 1 5.6590 -2.7112 1.3981 43 1 4.5441 -3.3483 -0.7901 44 1 6.0804 -2.8971 -1.7051 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000400902564.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:17 Heat of formation + Delta-G solvation = -25.989902 kcal Electronic energy + Delta-G solvation = -21851.719487 eV Core-core repulsion = 18804.295984 eV Total energy + Delta-G solvation = -3047.423503 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.80119 -37.39926 -36.81217 -33.82736 -33.12229 -32.09224 -30.28811 -28.80686 -27.48176 -24.53090 -23.27416 -22.38508 -21.95505 -21.20576 -19.66068 -18.31278 -17.15296 -16.89665 -16.08809 -15.57714 -15.04964 -14.60204 -14.36655 -14.06235 -13.96884 -13.85525 -13.40111 -13.28333 -12.72999 -12.32085 -12.14064 -12.03340 -11.76343 -11.73438 -11.50824 -11.37167 -11.16800 -10.96206 -10.66564 -10.62837 -10.51389 -10.38409 -10.29075 -10.11229 -10.00575 -9.57425 -9.46814 -8.62310 -8.37965 -7.60562 -6.12597 -4.10954 3.17050 3.22805 3.31524 3.35826 3.70613 4.32515 4.35876 4.61846 4.76139 4.85828 4.90872 5.07580 5.19332 5.20389 5.22461 5.30228 5.37916 5.45015 5.47511 5.51393 5.62671 5.75283 5.79722 5.90863 5.95019 5.98669 6.04696 6.07298 6.11224 6.21407 6.37239 6.42891 6.51958 6.65611 6.82396 6.93383 7.18404 7.28676 7.56637 7.57354 8.21670 8.42576 8.86050 8.92081 9.47766 11.00493 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.025630 B = 0.005285 C = 0.004959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.206200 B = 5297.225520 C = 5645.443679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C -0.084 4.084 4 H 0.087 0.913 5 C -0.148 4.148 6 C -0.102 4.102 7 C 0.072 3.928 8 H 0.102 0.898 9 N -0.819 5.819 10 C 0.479 3.521 11 O -0.546 6.546 12 N -0.561 5.561 13 C 0.209 3.791 14 C -0.524 4.524 15 H 0.075 0.925 16 C 0.074 3.926 17 N -0.896 5.896 18 Si 0.871 3.129 19 H -0.275 1.275 20 H -0.283 1.283 21 H -0.265 1.265 22 C 0.064 3.936 23 C -0.185 4.185 24 C -0.189 4.189 25 H 0.049 0.951 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.065 0.935 29 H 0.057 0.943 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.054 0.946 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.346 0.654 36 H 0.344 0.656 37 H 0.029 0.971 38 H 0.040 0.960 39 H 0.265 0.735 40 H 0.122 0.878 41 H 0.107 0.893 42 H 0.093 0.907 43 H 0.089 0.911 44 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.896 2.903 10.405 19.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.103 4.103 4 H 0.105 0.895 5 C -0.206 4.206 6 C -0.140 4.140 7 C -0.043 4.043 8 H 0.119 0.881 9 N -0.348 5.348 10 C 0.264 3.736 11 O -0.424 6.424 12 N -0.290 5.290 13 C 0.089 3.911 14 C -0.563 4.563 15 H 0.093 0.907 16 C -0.129 4.129 17 N -0.534 5.534 18 Si 0.698 3.302 19 H -0.200 1.200 20 H -0.209 1.209 21 H -0.189 1.189 22 C -0.042 4.042 23 C -0.223 4.223 24 C -0.228 4.228 25 H 0.068 0.932 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.159 0.841 36 H 0.157 0.843 37 H 0.047 0.953 38 H 0.058 0.942 39 H 0.074 0.926 40 H 0.139 0.861 41 H 0.125 0.875 42 H 0.111 0.889 43 H 0.107 0.893 44 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -16.106 3.184 10.301 19.381 hybrid contribution 2.000 0.102 0.175 2.010 sum -14.106 3.286 10.476 17.875 Atomic orbital electron populations 1.21785 0.96141 1.01200 1.01678 1.21650 0.95767 0.96694 1.01868 1.21084 0.94453 0.96273 0.98470 0.89510 1.21891 1.00993 1.00295 0.97379 1.21615 0.96324 1.01638 0.94472 1.21637 0.89851 0.98758 0.94065 0.88072 1.59215 1.63586 1.06190 1.05766 1.21693 0.91260 0.81683 0.78922 1.90664 1.68084 1.40479 1.43146 1.47467 1.08355 1.20930 1.52265 1.19749 0.75673 0.98181 0.97545 1.21278 0.93295 1.34651 1.07062 0.90695 1.24843 0.98350 0.94591 0.95112 1.69889 1.17751 1.40544 1.25249 0.86911 0.81982 0.80022 0.81264 1.20045 1.20897 1.18948 1.21695 0.96585 0.85034 1.00868 1.23281 1.01201 1.02497 0.95284 1.23504 1.02888 0.97264 0.99097 0.93180 0.92882 0.92716 0.91593 0.92397 0.93026 0.92948 0.92703 0.91238 0.91536 0.84118 0.84330 0.95324 0.94249 0.92553 0.86098 0.87493 0.88880 0.89266 0.86474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.67 37.15 0.36 -0.92 16 2 C -0.12 -1.16 5.28 -26.73 -0.14 -1.30 16 3 C -0.08 -0.86 2.33 -90.62 -0.21 -1.07 16 4 H 0.09 0.96 7.58 -51.93 -0.39 0.57 16 5 C -0.15 -1.33 8.80 37.16 0.33 -1.00 16 6 C -0.10 -1.25 3.99 -26.74 -0.11 -1.36 16 7 C 0.07 1.06 2.19 -68.87 -0.15 0.91 16 8 H 0.10 1.41 5.32 -51.93 -0.28 1.14 16 9 N -0.82 -11.35 8.33 -5.66 -0.05 -11.39 16 10 C 0.48 9.59 6.91 -10.98 -0.08 9.52 16 11 O -0.55 -13.18 15.83 5.56 0.09 -13.09 16 12 N -0.56 -11.43 2.80 -167.46 -0.47 -11.90 16 13 C 0.21 5.08 3.84 -5.19 -0.02 5.06 16 14 C -0.52 -14.76 8.94 -34.44 -0.31 -15.07 16 15 H 0.07 2.32 7.56 -52.49 -0.40 1.92 16 16 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 17 N -0.90 -27.37 13.96 55.43 0.77 -26.59 16 18 Si 0.87 21.47 27.47 -169.99 -4.67 16.81 16 19 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.26 -6.43 6.54 56.52 0.37 -6.06 16 22 C 0.06 1.02 5.46 -67.93 -0.37 0.65 16 23 C -0.19 -2.84 9.80 -26.69 -0.26 -3.10 16 24 C -0.19 -3.06 10.19 -26.69 -0.27 -3.33 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.05 0.41 6.70 -51.93 -0.35 0.07 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.68 6.29 -51.93 -0.33 0.35 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.05 0.44 6.85 -51.93 -0.36 0.09 16 33 H 0.07 0.84 6.58 -51.93 -0.34 0.50 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.35 4.93 8.58 -39.29 -0.34 4.59 16 36 H 0.34 4.94 9.06 -39.29 -0.36 4.58 16 37 H 0.03 0.66 5.23 -51.93 -0.27 0.39 16 38 H 0.04 1.05 6.48 -51.93 -0.34 0.72 16 39 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 40 H 0.12 1.56 5.42 -51.93 -0.28 1.28 16 41 H 0.11 1.90 6.02 -51.93 -0.31 1.58 16 42 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 43 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 44 H 0.12 2.38 6.72 -51.93 -0.35 2.03 16 LS Contribution 339.86 15.07 5.12 5.12 Total: -1.00 -31.85 339.86 -7.76 -39.62 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: -7.23 Total: 10.41 kcal Atomic # 6 Polarization: -7.65 SS G_CDS: -1.33 Total: -8.98 kcal Atomic # 7 Polarization: -50.14 SS G_CDS: 0.26 Total: -49.88 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: 0.09 Total: -13.09 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.67 Total: 16.81 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.85 -7.76 -39.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400902564.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.626 kcal (2) G-P(sol) polarization free energy of solvation -31.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds