Wall clock time and date at job start Mon Mar 30 2020 05:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47046 * 2 1 4 4 H 1.08996 * 109.47208 * 305.00636 * 3 2 1 5 5 C 1.53005 * 109.46948 * 65.00006 * 3 2 1 6 6 C 1.52999 * 109.47078 * 185.00239 * 3 2 1 7 7 C 1.52992 * 109.47286 * 65.92847 * 6 3 2 8 8 H 1.09001 * 109.46913 * 304.66133 * 7 6 3 9 9 N 1.46894 * 109.47501 * 64.65873 * 7 6 3 10 10 C 1.50708 * 109.47118 * 184.66415 * 7 6 3 11 11 O 1.21279 * 119.99782 * 259.99402 * 10 7 6 12 12 N 1.34770 * 120.00017 * 79.99467 * 10 7 6 13 13 C 1.46505 * 119.99791 * 179.97438 * 12 10 7 14 14 C 1.50701 * 109.47343 * 270.00060 * 13 12 10 15 15 H 1.07997 * 119.99778 * 0.02562 * 14 13 12 16 16 C 1.37878 * 119.99813 * 179.97438 * 14 13 12 17 17 N 1.31517 * 119.99552 * 180.02562 * 16 14 13 18 18 Si 1.86795 * 120.00086 * 0.02562 * 16 14 13 19 19 H 1.48495 * 109.47356 * 89.99899 * 18 16 14 20 20 H 1.48503 * 109.47021 * 210.00034 * 18 16 14 21 21 H 1.48506 * 109.47260 * 330.00035 * 18 16 14 22 22 C 1.46500 * 120.00234 * 0.02562 * 12 10 7 23 23 C 1.53005 * 117.49796 * 188.74779 * 22 12 10 24 24 C 1.52994 * 117.50487 * 120.08420 * 22 12 10 25 25 H 1.08999 * 109.47240 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47320 * 299.99470 * 1 2 3 27 27 H 1.09000 * 109.47566 * 59.99648 * 1 2 3 28 28 H 1.09001 * 109.47320 * 240.00530 * 2 1 3 29 29 H 1.09000 * 109.47566 * 120.00352 * 2 1 3 30 30 H 1.09000 * 109.46692 * 54.23641 * 5 3 2 31 31 H 1.09003 * 109.47072 * 174.23248 * 5 3 2 32 32 H 1.08993 * 109.47016 * 294.23716 * 5 3 2 33 33 H 1.09003 * 109.47059 * 305.91899 * 6 3 2 34 34 H 1.08998 * 109.47104 * 185.92843 * 6 3 2 35 35 H 1.00907 * 110.99912 * 60.00102 * 9 7 6 36 36 H 1.00900 * 111.00417 * 183.95365 * 9 7 6 37 37 H 1.09004 * 109.46589 * 150.00368 * 13 12 10 38 38 H 1.08996 * 109.46693 * 30.00519 * 13 12 10 39 39 H 0.96999 * 119.99815 * 180.02562 * 17 16 14 40 40 H 1.09007 * 115.55099 * 334.40754 * 22 12 10 41 41 H 1.08995 * 117.49835 * 359.97438 * 23 22 12 42 42 H 1.08997 * 117.50075 * 145.01710 * 23 22 12 43 43 H 1.08997 * 117.50077 * 214.97690 * 24 22 12 44 44 H 1.09004 * 117.49957 * 359.97305 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6052 1.9816 -0.8417 5 6 1.6351 2.1265 1.3074 6 6 3.5647 1.4444 -0.1258 7 6 3.9641 0.8952 -1.4968 8 1 3.5224 -0.0917 -1.6355 9 7 3.4794 1.8005 -2.5471 10 6 5.4652 0.7896 -1.5778 11 8 6.1032 1.6460 -2.1526 12 7 6.0987 -0.2565 -1.0116 13 6 7.5580 -0.3594 -1.0909 14 6 7.9411 -1.1230 -2.3324 15 1 7.1743 -1.4942 -2.9961 16 6 9.2705 -1.3469 -2.6213 17 7 9.6048 -2.0128 -3.7050 18 14 10.5968 -0.7043 -1.4735 19 1 10.9035 -1.7323 -0.4467 20 1 11.8236 -0.4029 -2.2542 21 1 10.1177 0.5334 -0.8071 22 6 5.3281 -1.2914 -0.3177 23 6 6.1089 -2.3399 0.4773 24 6 5.4362 -2.7243 -0.8429 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.9831 1.5313 2.1517 31 1 2.0844 3.1187 1.3526 32 1 0.5497 2.2168 1.3493 33 1 3.9945 0.8180 0.6559 34 1 3.9368 2.4634 -0.0202 35 1 3.8748 2.7227 -2.4404 36 1 3.6741 1.4276 -3.4642 37 1 7.9335 -0.8832 -0.2118 38 1 7.9910 0.6401 -1.1309 39 1 10.5401 -2.1706 -3.9081 40 1 4.3647 -0.9726 0.0804 41 1 7.1959 -2.2599 0.4837 42 1 5.6590 -2.7112 1.3981 43 1 4.5441 -3.3483 -0.7901 44 1 6.0804 -2.8971 -1.7051 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400902564.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:17 Heat of formation + Delta-G solvation = -48.100053 kcal Electronic energy + Delta-G solvation = -21852.678255 eV Core-core repulsion = 18804.295984 eV Total energy + Delta-G solvation = -3048.382271 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.29122 -38.57536 -38.10732 -35.26563 -34.76753 -33.92524 -31.10988 -30.52545 -28.66908 -25.83825 -24.48778 -23.78915 -23.23660 -22.64683 -20.50677 -19.81851 -19.11390 -18.54401 -17.40374 -17.02269 -16.48131 -15.83181 -15.52835 -15.44763 -15.35171 -15.11511 -14.73402 -14.64406 -14.12377 -13.66925 -13.60720 -13.28472 -12.94153 -12.82094 -12.76862 -12.65007 -12.45403 -12.29636 -12.10021 -12.06825 -11.84837 -11.62074 -11.56981 -11.43330 -11.18618 -11.09941 -10.95905 -10.83968 -9.73634 -9.26224 -8.37156 -6.40866 1.25868 1.30490 1.40495 1.62013 2.17936 2.26346 2.96024 3.02946 3.41229 3.64562 3.88734 3.97213 3.99281 4.07564 4.14929 4.17141 4.28075 4.45530 4.59889 4.73967 4.74717 4.85069 4.87405 4.88836 4.91902 4.94814 5.00786 5.09576 5.20288 5.28034 5.32058 5.36753 5.40818 5.43369 5.43940 5.54966 5.66391 5.73378 5.95899 6.19894 6.35017 6.59065 6.65750 7.17211 7.32328 8.79503 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.025630 B = 0.005285 C = 0.004959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.206200 B = 5297.225520 C = 5645.443679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C -0.076 4.076 4 H 0.076 0.924 5 C -0.146 4.146 6 C -0.096 4.096 7 C 0.088 3.912 8 H 0.115 0.885 9 N -0.808 5.808 10 C 0.468 3.532 11 O -0.597 6.597 12 N -0.569 5.569 13 C 0.219 3.781 14 C -0.523 4.523 15 H 0.030 0.970 16 C 0.014 3.986 17 N -0.943 5.943 18 Si 0.940 3.060 19 H -0.250 1.250 20 H -0.281 1.281 21 H -0.260 1.260 22 C 0.057 3.943 23 C -0.173 4.173 24 C -0.195 4.195 25 H 0.055 0.945 26 H 0.061 0.939 27 H 0.048 0.952 28 H 0.057 0.943 29 H 0.070 0.930 30 H 0.058 0.942 31 H 0.048 0.952 32 H 0.065 0.935 33 H 0.078 0.922 34 H 0.057 0.943 35 H 0.344 0.656 36 H 0.341 0.659 37 H 0.049 0.951 38 H 0.014 0.986 39 H 0.268 0.732 40 H 0.162 0.838 41 H 0.079 0.921 42 H 0.140 0.860 43 H 0.128 0.872 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.544 2.731 13.405 22.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C -0.095 4.095 4 H 0.095 0.905 5 C -0.203 4.203 6 C -0.135 4.135 7 C -0.028 4.028 8 H 0.132 0.868 9 N -0.335 5.335 10 C 0.255 3.745 11 O -0.479 6.479 12 N -0.297 5.297 13 C 0.096 3.904 14 C -0.562 4.562 15 H 0.048 0.952 16 C -0.184 4.184 17 N -0.583 5.583 18 Si 0.763 3.237 19 H -0.175 1.175 20 H -0.207 1.207 21 H -0.184 1.184 22 C -0.047 4.047 23 C -0.211 4.211 24 C -0.233 4.233 25 H 0.074 0.926 26 H 0.080 0.920 27 H 0.067 0.933 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.075 0.925 35 H 0.157 0.843 36 H 0.153 0.847 37 H 0.066 0.934 38 H 0.032 0.968 39 H 0.077 0.923 40 H 0.179 0.821 41 H 0.098 0.902 42 H 0.158 0.842 43 H 0.146 0.854 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -17.798 2.989 13.326 22.433 hybrid contribution 2.446 0.124 -0.849 2.592 sum -15.352 3.113 12.477 20.026 Atomic orbital electron populations 1.21766 0.95362 1.01677 1.01839 1.21661 0.96489 0.95886 1.02003 1.21006 0.92455 0.97083 0.98948 0.90531 1.21866 1.01708 1.00061 0.96676 1.21629 0.98018 1.01071 0.92745 1.21719 0.85490 0.99810 0.95802 0.86774 1.59273 1.62646 1.05990 1.05553 1.22864 0.93498 0.80629 0.77472 1.90625 1.69671 1.42325 1.45245 1.47566 1.07146 1.22285 1.52743 1.19379 0.78734 0.96012 0.96259 1.21423 0.92500 1.34474 1.07798 0.95178 1.25774 1.01016 0.94791 0.96856 1.70041 1.18492 1.42330 1.27472 0.85818 0.78409 0.79988 0.79450 1.17453 1.20682 1.18414 1.22159 0.97774 0.83890 1.00877 1.23376 0.99800 1.01340 0.96555 1.23413 1.03774 0.98200 0.97945 0.92584 0.92043 0.93277 0.92451 0.91182 0.92250 0.93289 0.91635 0.90332 0.92453 0.84280 0.84728 0.93351 0.96757 0.92327 0.82076 0.90242 0.84243 0.85391 0.91659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.67 71.98 0.70 -1.36 16 2 C -0.12 -1.91 5.28 30.59 0.16 -1.74 16 3 C -0.08 -1.34 2.33 -10.79 -0.03 -1.36 16 4 H 0.08 1.53 7.58 -2.39 -0.02 1.51 16 5 C -0.15 -2.15 8.80 71.98 0.63 -1.52 16 6 C -0.10 -2.15 3.99 30.59 0.12 -2.03 16 7 C 0.09 2.46 2.19 44.17 0.10 2.56 16 8 H 0.11 2.96 5.32 -2.39 -0.01 2.95 16 9 N -0.81 -22.02 8.33 -171.81 -1.43 -23.45 16 10 C 0.47 18.88 6.91 87.66 0.61 19.49 16 11 O -0.60 -29.82 15.83 -3.02 -0.05 -29.86 16 12 N -0.57 -23.20 2.80 -802.12 -2.24 -25.44 16 13 C 0.22 10.80 3.84 85.63 0.33 11.13 16 14 C -0.52 -30.74 8.94 25.60 0.23 -30.52 16 15 H 0.03 1.98 7.56 -2.91 -0.02 1.96 16 16 C 0.01 0.82 5.47 84.65 0.46 1.28 16 17 N -0.94 -59.76 13.96 21.45 0.30 -59.46 16 18 Si 0.94 44.87 27.47 68.60 1.88 46.75 16 19 H -0.25 -10.92 7.11 99.48 0.71 -10.21 16 20 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 21 H -0.26 -12.11 6.54 99.48 0.65 -11.46 16 22 C 0.06 1.70 5.46 44.99 0.25 1.95 16 23 C -0.17 -4.85 9.80 30.62 0.30 -4.55 16 24 C -0.19 -6.05 10.19 30.62 0.31 -5.74 16 25 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.06 0.75 6.70 -2.39 -0.02 0.73 16 27 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.06 0.99 6.29 -2.39 -0.02 0.98 16 29 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.06 0.84 6.85 -2.39 -0.02 0.82 16 33 H 0.08 1.62 6.58 -2.39 -0.02 1.61 16 34 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.34 9.82 8.58 -89.69 -0.77 9.05 16 36 H 0.34 9.83 9.06 -89.69 -0.81 9.02 16 37 H 0.05 2.21 5.23 -2.39 -0.01 2.19 16 38 H 0.01 0.78 6.48 -2.39 -0.02 0.77 16 39 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 40 H 0.16 3.50 5.42 -2.38 -0.01 3.49 16 41 H 0.08 2.70 6.02 -2.39 -0.01 2.68 16 42 H 0.14 2.64 8.14 -2.39 -0.02 2.62 16 43 H 0.13 2.94 8.14 -2.39 -0.02 2.92 16 44 H 0.06 2.76 6.72 -2.39 -0.02 2.75 16 Total: -1.00 -73.79 339.86 2.00 -71.79 By element: Atomic # 1 Polarization: 32.72 SS G_CDS: -0.63 Total: 32.09 kcal Atomic # 6 Polarization: -16.58 SS G_CDS: 4.17 Total: -12.41 kcal Atomic # 7 Polarization: -104.98 SS G_CDS: -3.37 Total: -108.35 kcal Atomic # 8 Polarization: -29.82 SS G_CDS: -0.05 Total: -29.86 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 1.88 Total: 46.75 kcal Total: -73.79 2.00 -71.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400902564.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.690 kcal (2) G-P(sol) polarization free energy of solvation -73.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds