Wall clock time and date at job start Mon Mar 30 2020 05:23:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47128 * 2 1 4 4 N 1.46903 * 109.47057 * 239.99725 * 2 1 3 5 5 C 1.52994 * 109.47063 * 119.99971 * 2 1 3 6 6 C 1.53003 * 109.47492 * 59.99949 * 5 2 1 7 7 C 1.52995 * 109.47528 * 299.99969 * 5 2 1 8 8 C 1.50709 * 109.47259 * 179.97438 * 5 2 1 9 9 O 1.21279 * 119.99663 * 352.05322 * 8 5 2 10 10 N 1.34768 * 120.00116 * 172.05318 * 8 5 2 11 11 C 1.46500 * 120.00252 * 185.06671 * 10 8 5 12 12 C 1.52997 * 109.47567 * 184.94391 * 11 10 8 13 13 C 1.50704 * 115.54744 * 53.72177 * 12 11 10 14 14 H 1.08002 * 119.99679 * 215.57832 * 13 12 11 15 15 C 1.37872 * 120.00260 * 35.30410 * 13 12 11 16 16 N 1.31514 * 119.99655 * 10.83531 * 15 13 12 17 17 Si 1.86795 * 120.00187 * 190.83530 * 15 13 12 18 18 H 1.48500 * 109.46977 * 59.99897 * 17 15 13 19 19 H 1.48501 * 109.47319 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47264 * 299.99983 * 17 15 13 21 21 C 1.52998 * 117.49939 * 199.39185 * 12 11 10 22 22 C 1.53006 * 117.49885 * 268.05251 * 12 11 10 23 23 H 1.08998 * 109.47068 * 300.00284 * 1 2 3 24 24 H 1.08999 * 109.47128 * 60.00215 * 1 2 3 25 25 H 1.08997 * 109.47392 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46989 * 180.02562 * 3 2 1 27 27 H 1.08999 * 109.46941 * 299.99900 * 3 2 1 28 28 H 1.08995 * 109.46884 * 59.99884 * 3 2 1 29 29 H 1.00893 * 111.00246 * 300.00132 * 4 2 1 30 30 H 1.00907 * 110.99721 * 63.95187 * 4 2 1 31 31 H 1.08998 * 109.47313 * 180.46617 * 6 5 2 32 32 H 1.08994 * 109.46819 * 300.47164 * 6 5 2 33 33 H 1.09003 * 109.46642 * 60.46997 * 6 5 2 34 34 H 1.09010 * 109.47017 * 300.65476 * 7 5 2 35 35 H 1.09005 * 109.47189 * 60.65344 * 7 5 2 36 36 H 1.09001 * 109.47681 * 180.65584 * 7 5 2 37 37 H 0.97004 * 120.00387 * 5.07466 * 10 8 5 38 38 H 1.08997 * 109.46874 * 64.94193 * 11 10 8 39 39 H 1.09004 * 109.47113 * 304.94591 * 11 10 8 40 40 H 0.97003 * 119.99664 * 184.97778 * 16 15 13 41 41 H 1.08996 * 117.50133 * 215.00357 * 21 12 11 42 42 H 1.09003 * 117.49942 * 0.02562 * 21 12 11 43 43 H 1.08997 * 117.49550 * 359.97438 * 22 12 11 44 44 H 1.08997 * 117.49551 * 144.97146 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6926 -1.1994 5 6 2.0400 -0.7212 1.2492 6 6 1.5300 -2.1638 1.2493 7 6 1.5300 0.0000 2.4985 8 6 3.5470 -0.7218 1.2489 9 8 4.1534 -0.3278 0.2753 10 7 4.2209 -1.1601 2.3306 11 6 5.6817 -1.0577 2.3747 12 6 6.2022 -1.7325 3.6454 13 6 5.7521 -3.1551 3.8569 14 1 5.5507 -3.5150 4.8551 15 6 5.5919 -3.9955 2.7757 16 7 6.0305 -3.6325 1.5902 17 14 4.7521 -5.6495 2.9947 18 1 3.3694 -5.4403 3.4943 19 1 4.7057 -6.3578 1.6903 20 1 5.5139 -6.4658 3.9737 21 6 7.6083 -1.3586 4.1186 22 6 6.3832 -0.8567 4.8869 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6766 1.9563 0.8899 29 1 1.6961 -1.6479 -1.2227 30 1 1.7501 -0.1990 -2.0373 31 1 1.8865 -2.6751 2.1434 32 1 0.4401 -2.1637 1.2408 33 1 1.9002 -2.6800 0.3635 34 1 1.8838 1.0310 2.4926 35 1 0.4400 -0.0102 2.5044 36 1 1.9029 -0.5070 3.3884 37 1 3.7388 -1.5435 3.0800 38 1 5.9724 -0.0072 2.3760 39 1 6.1071 -1.5514 1.5009 40 1 5.8544 -4.1902 0.8163 41 1 8.2079 -2.1415 4.5828 42 1 8.1624 -0.6316 3.5248 43 1 6.1318 0.2001 4.7982 44 1 6.1763 -1.3095 5.8566 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404153807.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:57 Heat of formation + Delta-G solvation = -16.424101 kcal Electronic energy + Delta-G solvation = -22585.691480 eV Core-core repulsion = 19538.682781 eV Total energy + Delta-G solvation = -3047.008699 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.95892 -37.28159 -36.11606 -33.32404 -32.21467 -31.77653 -29.38703 -27.56165 -26.30771 -25.96038 -25.17311 -23.11152 -21.20435 -19.99009 -19.18989 -17.84282 -16.64676 -15.88329 -15.69579 -14.83526 -14.75094 -14.38907 -14.28320 -13.81657 -13.57266 -13.20997 -12.93470 -12.74027 -12.38482 -11.99789 -11.98143 -11.77440 -11.65594 -11.59875 -11.42306 -11.26161 -10.97968 -10.90989 -10.72205 -10.51308 -10.45794 -10.21388 -10.15502 -9.50511 -9.13752 -8.74460 -8.61565 -8.15500 -8.03383 -7.62325 -6.01268 -4.11309 3.24411 3.32926 3.33281 3.75219 4.23438 4.35381 4.70464 4.82053 4.97529 5.13913 5.25488 5.36329 5.41913 5.52425 5.58437 5.71307 5.79747 5.91443 5.96031 6.02161 6.03388 6.07135 6.07366 6.15980 6.24067 6.36783 6.49429 6.54542 6.62144 6.65541 6.75407 6.79826 6.96761 7.17905 7.32430 7.57112 7.65774 7.79628 7.82740 7.99809 8.38150 8.76174 8.91241 9.46433 9.50184 10.96201 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.019316 B = 0.007240 C = 0.006176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.236112 B = 3866.265226 C = 4532.417731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.143 3.857 3 C -0.149 4.149 4 N -0.816 5.816 5 C -0.069 4.069 6 C -0.144 4.144 7 C -0.146 4.146 8 C 0.516 3.484 9 O -0.524 6.524 10 N -0.696 5.696 11 C 0.163 3.837 12 C 0.041 3.959 13 C -0.500 4.500 14 H 0.058 0.942 15 C 0.079 3.921 16 N -0.858 5.858 17 Si 0.883 3.117 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.277 1.277 21 C -0.198 4.198 22 C -0.213 4.213 23 H 0.062 0.938 24 H 0.051 0.949 25 H 0.056 0.944 26 H 0.088 0.912 27 H 0.044 0.956 28 H 0.052 0.948 29 H 0.333 0.667 30 H 0.332 0.668 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.393 0.607 38 H 0.017 0.983 39 H 0.110 0.890 40 H 0.263 0.737 41 H 0.078 0.922 42 H 0.065 0.935 43 H 0.067 0.933 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.434 5.993 -1.073 12.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.050 3.950 3 C -0.206 4.206 4 N -0.346 5.346 5 C -0.073 4.073 6 C -0.202 4.202 7 C -0.204 4.204 8 C 0.300 3.700 9 O -0.400 6.400 10 N -0.345 5.345 11 C 0.040 3.960 12 C 0.040 3.960 13 C -0.537 4.537 14 H 0.077 0.923 15 C -0.126 4.126 16 N -0.492 5.492 17 Si 0.710 3.290 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.203 1.203 21 C -0.236 4.236 22 C -0.251 4.251 23 H 0.081 0.919 24 H 0.070 0.930 25 H 0.075 0.925 26 H 0.107 0.893 27 H 0.063 0.937 28 H 0.071 0.929 29 H 0.146 0.854 30 H 0.144 0.856 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.227 0.773 38 H 0.035 0.965 39 H 0.128 0.872 40 H 0.074 0.926 41 H 0.097 0.903 42 H 0.084 0.916 43 H 0.085 0.915 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -10.150 6.330 -1.687 12.080 hybrid contribution -1.708 -1.289 0.329 2.165 sum -11.858 5.041 -1.358 12.956 Atomic orbital electron populations 1.22812 0.97899 1.01794 1.01974 1.20398 0.90298 0.94321 0.90020 1.22045 1.04647 0.93738 1.00193 1.58720 1.67618 1.05255 1.02973 1.20758 0.94411 0.96606 0.95532 1.21902 1.00345 0.94634 1.03295 1.22008 1.01003 1.00800 0.96550 1.19901 0.88311 0.78779 0.83005 1.90621 1.69404 1.47344 1.32635 1.45750 1.08340 1.61546 1.18859 1.20900 0.78869 0.95203 1.01001 1.19201 0.93655 0.93828 0.89298 1.20402 1.46744 0.93384 0.93197 0.92343 1.24899 0.94646 0.97652 0.95393 1.69894 1.41713 1.38403 0.99240 0.86809 0.80309 0.84469 0.77372 1.20154 1.21253 1.20302 1.22909 0.92699 1.02637 1.05383 1.22949 1.05925 0.98217 0.97959 0.91911 0.93010 0.92508 0.89347 0.93693 0.92946 0.85373 0.85581 0.91663 0.92323 0.91835 0.91970 0.92046 0.91763 0.77326 0.96454 0.87234 0.92630 0.90327 0.91600 0.91452 0.90750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.02 8.05 37.16 0.30 -1.72 16 2 C 0.14 1.98 0.36 -131.60 -0.05 1.94 16 3 C -0.15 -2.14 8.06 37.16 0.30 -1.84 16 4 N -0.82 -12.09 7.42 0.74 0.01 -12.08 16 5 C -0.07 -1.06 0.27 -155.66 -0.04 -1.11 16 6 C -0.14 -2.13 7.76 37.16 0.29 -1.85 16 7 C -0.15 -1.91 7.60 37.16 0.28 -1.62 16 8 C 0.52 10.43 5.94 -10.99 -0.07 10.36 16 9 O -0.52 -12.29 13.05 5.56 0.07 -12.22 16 10 N -0.70 -14.74 5.03 -60.29 -0.30 -15.05 16 11 C 0.16 3.90 4.78 -4.04 -0.02 3.88 16 12 C 0.04 0.97 1.96 -155.66 -0.30 0.67 16 13 C -0.50 -12.83 8.40 -34.44 -0.29 -13.12 16 14 H 0.06 1.50 7.84 -52.49 -0.41 1.09 16 15 C 0.08 2.06 5.14 -17.82 -0.09 1.97 16 16 N -0.86 -23.37 10.78 55.43 0.60 -22.78 16 17 Si 0.88 20.20 29.55 -169.99 -5.02 15.17 16 18 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 19 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 21 C -0.20 -4.43 9.96 -26.69 -0.27 -4.70 16 22 C -0.21 -4.48 9.92 -26.69 -0.26 -4.74 16 23 H 0.06 0.64 6.44 -51.93 -0.33 0.30 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.06 0.59 6.42 -51.93 -0.33 0.26 16 26 H 0.09 1.59 5.81 -51.93 -0.30 1.29 16 27 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.67 6.41 -51.93 -0.33 0.34 16 29 H 0.33 4.66 7.17 -39.30 -0.28 4.37 16 30 H 0.33 4.25 8.98 -39.29 -0.35 3.89 16 31 H 0.06 1.03 8.01 -51.93 -0.42 0.62 16 32 H 0.06 0.70 6.40 -51.93 -0.33 0.37 16 33 H 0.06 1.01 6.69 -51.93 -0.35 0.66 16 34 H 0.06 0.81 6.39 -51.92 -0.33 0.48 16 35 H 0.06 0.67 6.46 -51.93 -0.34 0.33 16 36 H 0.06 0.85 7.24 -51.93 -0.38 0.47 16 37 H 0.39 8.00 7.05 -40.82 -0.29 7.72 16 38 H 0.02 0.41 8.08 -51.93 -0.42 -0.01 16 39 H 0.11 3.02 6.00 -51.93 -0.31 2.71 16 40 H 0.26 7.09 8.32 -40.82 -0.34 6.75 16 41 H 0.08 1.77 8.14 -51.93 -0.42 1.35 16 42 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 43 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 44 H 0.07 1.52 8.14 -51.93 -0.42 1.09 16 LS Contribution 333.95 15.07 5.03 5.03 Total: -1.00 -28.55 333.95 -7.02 -35.57 By element: Atomic # 1 Polarization: 25.41 SS G_CDS: -7.18 Total: 18.24 kcal Atomic # 6 Polarization: -11.67 SS G_CDS: -0.22 Total: -11.89 kcal Atomic # 7 Polarization: -50.20 SS G_CDS: 0.30 Total: -49.90 kcal Atomic # 8 Polarization: -12.29 SS G_CDS: 0.07 Total: -12.22 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -28.55 -7.02 -35.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404153807.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.148 kcal (2) G-P(sol) polarization free energy of solvation -28.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds