Wall clock time and date at job start Mon Mar 30 2020 05:23:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47128 * 2 1 4 4 N 1.46903 * 109.47057 * 239.99725 * 2 1 3 5 5 C 1.52994 * 109.47063 * 119.99971 * 2 1 3 6 6 C 1.53003 * 109.47492 * 59.99949 * 5 2 1 7 7 C 1.52995 * 109.47528 * 299.99969 * 5 2 1 8 8 C 1.50709 * 109.47259 * 179.97438 * 5 2 1 9 9 O 1.21279 * 119.99663 * 352.05322 * 8 5 2 10 10 N 1.34768 * 120.00116 * 172.05318 * 8 5 2 11 11 C 1.46500 * 120.00252 * 185.06671 * 10 8 5 12 12 C 1.52997 * 109.47567 * 184.94391 * 11 10 8 13 13 C 1.50704 * 115.54744 * 53.72177 * 12 11 10 14 14 H 1.08002 * 119.99679 * 215.57832 * 13 12 11 15 15 C 1.37872 * 120.00260 * 35.30410 * 13 12 11 16 16 N 1.31514 * 119.99655 * 10.83531 * 15 13 12 17 17 Si 1.86795 * 120.00187 * 190.83530 * 15 13 12 18 18 H 1.48500 * 109.46977 * 59.99897 * 17 15 13 19 19 H 1.48501 * 109.47319 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47264 * 299.99983 * 17 15 13 21 21 C 1.52998 * 117.49939 * 199.39185 * 12 11 10 22 22 C 1.53006 * 117.49885 * 268.05251 * 12 11 10 23 23 H 1.08998 * 109.47068 * 300.00284 * 1 2 3 24 24 H 1.08999 * 109.47128 * 60.00215 * 1 2 3 25 25 H 1.08997 * 109.47392 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46989 * 180.02562 * 3 2 1 27 27 H 1.08999 * 109.46941 * 299.99900 * 3 2 1 28 28 H 1.08995 * 109.46884 * 59.99884 * 3 2 1 29 29 H 1.00893 * 111.00246 * 300.00132 * 4 2 1 30 30 H 1.00907 * 110.99721 * 63.95187 * 4 2 1 31 31 H 1.08998 * 109.47313 * 180.46617 * 6 5 2 32 32 H 1.08994 * 109.46819 * 300.47164 * 6 5 2 33 33 H 1.09003 * 109.46642 * 60.46997 * 6 5 2 34 34 H 1.09010 * 109.47017 * 300.65476 * 7 5 2 35 35 H 1.09005 * 109.47189 * 60.65344 * 7 5 2 36 36 H 1.09001 * 109.47681 * 180.65584 * 7 5 2 37 37 H 0.97004 * 120.00387 * 5.07466 * 10 8 5 38 38 H 1.08997 * 109.46874 * 64.94193 * 11 10 8 39 39 H 1.09004 * 109.47113 * 304.94591 * 11 10 8 40 40 H 0.97003 * 119.99664 * 184.97778 * 16 15 13 41 41 H 1.08996 * 117.50133 * 215.00357 * 21 12 11 42 42 H 1.09003 * 117.49942 * 0.02562 * 21 12 11 43 43 H 1.08997 * 117.49550 * 359.97438 * 22 12 11 44 44 H 1.08997 * 117.49551 * 144.97146 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6926 -1.1994 5 6 2.0400 -0.7212 1.2492 6 6 1.5300 -2.1638 1.2493 7 6 1.5300 0.0000 2.4985 8 6 3.5470 -0.7218 1.2489 9 8 4.1534 -0.3278 0.2753 10 7 4.2209 -1.1601 2.3306 11 6 5.6817 -1.0577 2.3747 12 6 6.2022 -1.7325 3.6454 13 6 5.7521 -3.1551 3.8569 14 1 5.5507 -3.5150 4.8551 15 6 5.5919 -3.9955 2.7757 16 7 6.0305 -3.6325 1.5902 17 14 4.7521 -5.6495 2.9947 18 1 3.3694 -5.4403 3.4943 19 1 4.7057 -6.3578 1.6903 20 1 5.5139 -6.4658 3.9737 21 6 7.6083 -1.3586 4.1186 22 6 6.3832 -0.8567 4.8869 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6766 1.9563 0.8899 29 1 1.6961 -1.6479 -1.2227 30 1 1.7501 -0.1990 -2.0373 31 1 1.8865 -2.6751 2.1434 32 1 0.4401 -2.1637 1.2408 33 1 1.9002 -2.6800 0.3635 34 1 1.8838 1.0310 2.4926 35 1 0.4400 -0.0102 2.5044 36 1 1.9029 -0.5070 3.3884 37 1 3.7388 -1.5435 3.0800 38 1 5.9724 -0.0072 2.3760 39 1 6.1071 -1.5514 1.5009 40 1 5.8544 -4.1902 0.8163 41 1 8.2079 -2.1415 4.5828 42 1 8.1624 -0.6316 3.5248 43 1 6.1318 0.2001 4.7982 44 1 6.1763 -1.3095 5.8566 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404153807.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:57 Heat of formation + Delta-G solvation = -35.341795 kcal Electronic energy + Delta-G solvation = -22586.511813 eV Core-core repulsion = 19538.682781 eV Total energy + Delta-G solvation = -3047.829031 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.32612 -38.90772 -37.71848 -34.88385 -34.13656 -33.19207 -30.50790 -28.58970 -27.79408 -27.39039 -27.02535 -24.38188 -22.95668 -21.42198 -21.06381 -19.33106 -18.18711 -17.35474 -17.07856 -16.68402 -16.20239 -15.90981 -15.69238 -15.36473 -14.86076 -14.71058 -14.33854 -13.98163 -13.80247 -13.50093 -13.29898 -13.06961 -13.01438 -12.91175 -12.79519 -12.66941 -12.54020 -12.49744 -12.30556 -12.03943 -11.98112 -11.65260 -11.39077 -11.24539 -11.07292 -10.59409 -10.23330 -9.95664 -9.41760 -9.19773 -7.99229 -6.15181 1.42291 1.45140 1.51629 2.19154 2.44025 2.69380 3.10240 3.61301 3.68108 3.74095 3.93427 4.13893 4.29255 4.32652 4.34829 4.43167 4.56901 4.74527 4.78191 4.79666 4.84065 4.87247 4.90665 4.92361 4.95789 4.97559 5.04324 5.08919 5.16788 5.20897 5.34853 5.38117 5.47337 5.54618 5.61561 5.63367 5.98796 6.07802 6.41749 6.53645 6.77273 6.83886 7.19742 7.48528 7.85624 8.95126 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.019316 B = 0.007240 C = 0.006176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.236112 B = 3866.265226 C = 4532.417731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.142 3.858 3 C -0.146 4.146 4 N -0.840 5.840 5 C -0.064 4.064 6 C -0.141 4.141 7 C -0.144 4.144 8 C 0.508 3.492 9 O -0.562 6.562 10 N -0.695 5.695 11 C 0.177 3.823 12 C 0.012 3.988 13 C -0.506 4.506 14 H 0.057 0.943 15 C 0.041 3.959 16 N -0.885 5.885 17 Si 0.936 3.064 18 H -0.260 1.260 19 H -0.295 1.295 20 H -0.277 1.277 21 C -0.204 4.204 22 C -0.183 4.183 23 H 0.077 0.923 24 H 0.063 0.937 25 H 0.064 0.936 26 H 0.046 0.954 27 H 0.058 0.942 28 H 0.068 0.932 29 H 0.335 0.665 30 H 0.341 0.659 31 H 0.051 0.949 32 H 0.094 0.906 33 H 0.045 0.955 34 H 0.060 0.940 35 H 0.093 0.907 36 H 0.060 0.940 37 H 0.397 0.603 38 H 0.013 0.987 39 H 0.068 0.932 40 H 0.255 0.745 41 H 0.073 0.927 42 H 0.071 0.929 43 H 0.085 0.915 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.053 6.341 0.100 15.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.048 3.952 3 C -0.203 4.203 4 N -0.371 5.371 5 C -0.067 4.067 6 C -0.199 4.199 7 C -0.201 4.201 8 C 0.295 3.705 9 O -0.441 6.441 10 N -0.344 5.344 11 C 0.053 3.947 12 C 0.012 3.988 13 C -0.543 4.543 14 H 0.075 0.925 15 C -0.161 4.161 16 N -0.521 5.521 17 Si 0.762 3.238 18 H -0.185 1.185 19 H -0.221 1.221 20 H -0.202 1.202 21 C -0.242 4.242 22 C -0.220 4.220 23 H 0.095 0.905 24 H 0.082 0.918 25 H 0.083 0.917 26 H 0.065 0.935 27 H 0.077 0.923 28 H 0.087 0.913 29 H 0.149 0.851 30 H 0.154 0.846 31 H 0.070 0.930 32 H 0.113 0.887 33 H 0.064 0.936 34 H 0.079 0.921 35 H 0.112 0.888 36 H 0.079 0.921 37 H 0.232 0.768 38 H 0.031 0.969 39 H 0.086 0.914 40 H 0.065 0.935 41 H 0.092 0.908 42 H 0.090 0.910 43 H 0.104 0.896 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -12.791 6.681 -0.486 14.439 hybrid contribution -0.806 -1.357 -0.044 1.579 sum -13.598 5.324 -0.530 14.612 Atomic orbital electron populations 1.22692 0.94715 1.02771 1.03325 1.20452 0.92529 0.93370 0.88801 1.21988 1.01867 0.94753 1.01715 1.58684 1.68697 1.05774 1.03941 1.20793 0.90344 0.97775 0.97812 1.21900 1.02527 0.93668 1.01768 1.22026 1.02979 1.00222 0.94891 1.20872 0.90583 0.77239 0.81816 1.90605 1.70889 1.48708 1.33869 1.45712 1.07263 1.61865 1.19561 1.20493 0.80558 0.94201 0.99466 1.19259 0.94922 0.93928 0.90724 1.20611 1.46408 0.94301 0.93018 0.92491 1.25490 0.95208 1.00364 0.95061 1.70083 1.43050 1.39316 0.99687 0.85954 0.80175 0.80885 0.76744 1.18483 1.22078 1.20248 1.22920 0.92600 1.02857 1.05835 1.22937 1.03434 0.98687 0.96961 0.90453 0.91819 0.91677 0.93538 0.92308 0.91294 0.85099 0.84571 0.92985 0.88725 0.93591 0.92055 0.88812 0.92068 0.76826 0.96885 0.91374 0.93525 0.90840 0.91001 0.89650 0.89708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.15 8.05 71.98 0.58 -2.57 16 2 C 0.14 3.67 0.36 3.53 0.00 3.67 16 3 C -0.15 -4.01 8.06 71.98 0.58 -3.43 16 4 N -0.84 -24.40 7.42 -151.56 -1.12 -25.53 16 5 C -0.06 -1.86 0.27 -52.93 -0.01 -1.88 16 6 C -0.14 -3.92 7.76 71.98 0.56 -3.36 16 7 C -0.14 -3.35 7.60 71.98 0.55 -2.81 16 8 C 0.51 20.79 5.94 87.66 0.52 21.31 16 9 O -0.56 -27.36 13.05 -3.03 -0.04 -27.40 16 10 N -0.70 -29.79 5.03 -463.07 -2.33 -32.12 16 11 C 0.18 8.67 4.78 86.38 0.41 9.08 16 12 C 0.01 0.59 1.96 -52.93 -0.10 0.49 16 13 C -0.51 -25.90 8.40 25.60 0.21 -25.69 16 14 H 0.06 2.88 7.84 -2.91 -0.02 2.85 16 15 C 0.04 2.15 5.14 84.65 0.44 2.58 16 16 N -0.89 -49.67 10.78 21.45 0.23 -49.44 16 17 Si 0.94 41.42 29.55 68.60 2.03 43.45 16 18 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 19 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 20 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 21 C -0.20 -9.06 9.96 30.62 0.30 -8.75 16 22 C -0.18 -7.39 9.92 30.62 0.30 -7.08 16 23 H 0.08 1.18 6.44 -2.39 -0.02 1.17 16 24 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.06 1.08 6.42 -2.39 -0.02 1.06 16 26 H 0.05 1.69 5.81 -2.39 -0.01 1.67 16 27 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.07 1.62 6.41 -2.39 -0.02 1.60 16 29 H 0.34 9.18 7.17 -89.70 -0.64 8.54 16 30 H 0.34 8.47 8.98 -89.69 -0.81 7.67 16 31 H 0.05 1.57 8.01 -2.39 -0.02 1.55 16 32 H 0.09 1.93 6.40 -2.39 -0.02 1.91 16 33 H 0.05 1.43 6.69 -2.39 -0.02 1.41 16 34 H 0.06 1.44 6.39 -2.38 -0.02 1.43 16 35 H 0.09 1.60 6.46 -2.38 -0.02 1.58 16 36 H 0.06 1.47 7.24 -2.39 -0.02 1.45 16 37 H 0.40 16.11 7.05 -92.71 -0.65 15.46 16 38 H 0.01 0.63 8.08 -2.39 -0.02 0.61 16 39 H 0.07 3.94 6.00 -2.39 -0.01 3.93 16 40 H 0.26 14.23 8.32 -92.71 -0.77 13.46 16 41 H 0.07 3.30 8.14 -2.39 -0.02 3.28 16 42 H 0.07 3.06 8.14 -2.39 -0.02 3.04 16 43 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 44 H 0.08 3.25 8.14 -2.39 -0.02 3.23 16 Total: -1.00 -63.20 333.95 2.02 -61.18 By element: Atomic # 1 Polarization: 49.39 SS G_CDS: -1.08 Total: 48.30 kcal Atomic # 6 Polarization: -22.78 SS G_CDS: 4.34 Total: -18.44 kcal Atomic # 7 Polarization: -103.86 SS G_CDS: -3.22 Total: -107.09 kcal Atomic # 8 Polarization: -27.36 SS G_CDS: -0.04 Total: -27.40 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.45 kcal Total: -63.20 2.02 -61.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404153807.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.836 kcal (2) G-P(sol) polarization free energy of solvation -63.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds