Wall clock time and date at job start Mon Mar 30 2020 05:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47286 * 2 1 4 4 C 1.50700 * 109.47018 * 239.99747 * 2 1 3 5 5 H 1.07999 * 119.99791 * 239.99922 * 4 2 1 6 6 C 1.37876 * 120.00097 * 60.00237 * 4 2 1 7 7 N 1.31516 * 119.99597 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00091 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46779 * 90.00217 * 8 6 4 10 10 H 1.48499 * 109.47203 * 210.00129 * 8 6 4 11 11 H 1.48495 * 109.47001 * 330.00325 * 8 6 4 12 12 C 1.53000 * 109.46800 * 119.99717 * 2 1 3 13 13 N 1.46494 * 109.47657 * 300.00050 * 12 2 1 14 14 C 1.34773 * 120.00323 * 179.72604 * 13 12 2 15 15 O 1.21282 * 119.99768 * 355.03783 * 14 13 12 16 16 C 1.50707 * 120.00203 * 175.04296 * 14 13 12 17 17 H 1.09000 * 109.46456 * 334.88611 * 16 14 13 18 18 C 1.52989 * 109.46938 * 214.88680 * 16 14 13 19 19 N 1.46902 * 109.47424 * 65.37888 * 18 16 14 20 20 C 1.53000 * 109.47008 * 94.88350 * 16 14 13 21 21 C 1.52996 * 109.46803 * 185.00076 * 20 16 14 22 22 C 1.53004 * 117.50097 * 243.74866 * 21 20 16 23 23 C 1.53003 * 117.49704 * 175.08614 * 21 20 16 24 24 H 1.08996 * 109.47321 * 300.00517 * 1 2 3 25 25 H 1.09001 * 109.46875 * 60.00014 * 1 2 3 26 26 H 1.08995 * 109.47119 * 180.02562 * 1 2 3 27 27 H 1.08992 * 109.47044 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47152 * 299.99817 * 3 2 1 29 29 H 1.08997 * 109.47087 * 59.99982 * 3 2 1 30 30 H 0.97008 * 119.99922 * 179.97438 * 7 6 4 31 31 H 1.09000 * 109.47265 * 179.97438 * 12 2 1 32 32 H 1.09007 * 109.46807 * 60.00300 * 12 2 1 33 33 H 0.97004 * 119.99517 * 0.02562 * 13 12 2 34 34 H 1.09004 * 109.47106 * 185.37485 * 18 16 14 35 35 H 1.08995 * 109.47542 * 305.37496 * 18 16 14 36 36 H 1.00901 * 110.99880 * 174.32895 * 19 18 16 37 37 H 1.00898 * 110.99666 * 298.27648 * 19 18 16 38 38 H 1.08997 * 109.47082 * 305.00250 * 20 16 14 39 39 H 1.09002 * 109.47361 * 65.00427 * 20 16 14 40 40 H 1.08996 * 115.55255 * 29.42225 * 21 20 16 41 41 H 1.08997 * 117.49551 * 359.97438 * 22 21 20 42 42 H 1.08998 * 117.49860 * 145.02316 * 22 21 20 43 43 H 1.09004 * 117.50325 * 214.97392 * 23 21 20 44 44 H 1.09003 * 117.50040 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9437 0.8302 -2.6033 8 14 2.3225 -1.1197 -4.0079 9 1 1.3447 -2.1617 -4.4123 10 1 2.4874 -0.1404 -5.1120 11 1 3.6308 -1.7568 -3.7118 12 6 2.0400 -0.7212 1.2493 13 7 1.5517 -0.0306 2.4454 14 6 1.8726 -0.4943 3.6695 15 8 2.4893 -1.5325 3.7822 16 6 1.4652 0.2773 4.8983 17 1 1.3413 1.3294 4.6420 18 6 2.5476 0.1375 5.9704 19 7 3.7825 0.7841 5.5068 20 6 0.1430 -0.2766 5.4331 21 6 -0.3340 0.5844 6.6044 22 6 -0.4266 -0.0813 7.9789 23 6 -1.7030 0.2619 7.2067 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 3.1300 1.4424 0.0005 28 1 1.6768 1.9563 -0.8900 29 1 1.6768 1.9563 0.8900 30 1 0.7096 1.1618 -3.4844 31 1 3.1300 -0.7216 1.2491 32 1 1.6766 -1.7489 1.2493 33 1 0.9937 0.7578 2.3564 34 1 2.2111 0.6147 6.8909 35 1 2.7390 -0.9190 6.1579 36 1 4.4836 0.7868 6.2324 37 1 4.1302 0.3412 4.6696 38 1 -0.6053 -0.2589 4.6408 39 1 0.2892 -1.3022 5.7720 40 1 -0.0326 1.6314 6.5716 41 1 -0.1481 -1.1328 8.0485 42 1 -0.1864 0.5278 8.8503 43 1 -2.3021 1.0967 7.5707 44 1 -2.2641 -0.5633 6.7682 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404710400.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:11 Heat of formation + Delta-G solvation = -55.633556 kcal Electronic energy + Delta-G solvation = -21224.259964 eV Core-core repulsion = 18175.551016 eV Total energy + Delta-G solvation = -3048.708948 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.10606 -38.76476 -38.03166 -35.86881 -34.98432 -32.94324 -32.12028 -27.62387 -27.56161 -27.09861 -26.21932 -23.85895 -23.10406 -21.42143 -20.87513 -20.53865 -18.45640 -17.68542 -17.17942 -16.81124 -16.45300 -16.11215 -15.86844 -15.78166 -15.21600 -14.79967 -14.69228 -14.40236 -14.08286 -13.98667 -13.21376 -13.12981 -13.04034 -12.72718 -12.62334 -12.54583 -12.40555 -12.29838 -12.24445 -12.19952 -12.11759 -11.48219 -11.28723 -11.17084 -10.74396 -10.72047 -10.56917 -10.39670 -9.91675 -9.67658 -8.02160 -6.18059 1.42137 1.45032 1.53188 1.67995 2.33499 2.50675 2.96172 3.21298 3.50516 3.65285 3.95466 3.96858 4.10474 4.16724 4.33991 4.40410 4.50461 4.51953 4.67900 4.72104 4.75835 4.86341 4.89190 4.96587 5.00101 5.06255 5.06569 5.11380 5.14047 5.19912 5.33401 5.37709 5.42756 5.61148 5.67006 5.67534 6.10231 6.15098 6.21912 6.43561 6.49737 6.69808 6.86116 7.33296 7.49661 8.96634 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.029247 B = 0.004010 C = 0.003778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.135015 B = 6981.570961 C = 7409.041069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.051 3.949 3 C -0.119 4.119 4 C -0.530 4.530 5 H 0.043 0.957 6 C 0.029 3.971 7 N -0.898 5.898 8 Si 0.944 3.056 9 H -0.279 1.279 10 H -0.282 1.282 11 H -0.276 1.276 12 C 0.148 3.852 13 N -0.708 5.708 14 C 0.510 3.490 15 O -0.594 6.594 16 C -0.091 4.091 17 H 0.109 0.891 18 C 0.083 3.917 19 N -0.854 5.854 20 C -0.072 4.072 21 C -0.152 4.152 22 C -0.179 4.179 23 C -0.181 4.181 24 H 0.036 0.964 25 H 0.062 0.938 26 H 0.016 0.984 27 H 0.018 0.982 28 H 0.062 0.938 29 H 0.036 0.964 30 H 0.260 0.740 31 H 0.038 0.962 32 H 0.034 0.966 33 H 0.408 0.592 34 H 0.103 0.897 35 H 0.022 0.978 36 H 0.352 0.648 37 H 0.333 0.667 38 H 0.070 0.930 39 H 0.060 0.940 40 H 0.117 0.883 41 H 0.089 0.911 42 H 0.106 0.894 43 H 0.105 0.895 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.999 2.872 18.582 19.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.050 3.950 3 C -0.177 4.177 4 C -0.568 4.568 5 H 0.061 0.939 6 C -0.171 4.171 7 N -0.537 5.537 8 Si 0.771 3.229 9 H -0.205 1.205 10 H -0.208 1.208 11 H -0.201 1.201 12 C 0.024 3.976 13 N -0.359 5.359 14 C 0.297 3.703 15 O -0.476 6.476 16 C -0.113 4.113 17 H 0.127 0.873 18 C -0.048 4.048 19 N -0.384 5.384 20 C -0.110 4.110 21 C -0.170 4.170 22 C -0.215 4.215 23 C -0.218 4.218 24 H 0.055 0.945 25 H 0.081 0.919 26 H 0.035 0.965 27 H 0.037 0.963 28 H 0.080 0.920 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.245 0.755 34 H 0.121 0.879 35 H 0.041 0.959 36 H 0.165 0.835 37 H 0.144 0.856 38 H 0.089 0.911 39 H 0.079 0.921 40 H 0.135 0.865 41 H 0.108 0.892 42 H 0.124 0.876 43 H 0.124 0.876 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.081 2.927 18.413 18.897 hybrid contribution 0.639 -1.319 -1.228 1.912 sum -2.442 1.608 17.185 17.432 Atomic orbital electron populations 1.21661 0.97174 0.98534 1.00376 1.18355 0.93202 0.93076 0.90327 1.21647 0.97896 0.97765 1.00344 1.21274 1.31756 1.12143 0.91647 0.93856 1.25447 0.95151 0.95576 1.00938 1.69911 1.37001 1.23197 1.23590 0.85770 0.78650 0.78502 0.79948 1.20526 1.20765 1.20098 1.21241 0.96870 0.94976 0.84517 1.46216 1.52463 1.31760 1.05414 1.21288 0.78349 0.85074 0.85546 1.90633 1.43603 1.25829 1.87528 1.21372 0.97068 1.00931 0.91951 0.87267 1.21636 0.89368 0.96874 0.96948 1.58829 1.08435 1.60881 1.10218 1.21008 0.93828 0.98662 0.97547 1.22229 1.01112 1.00170 0.93459 1.23132 1.01905 1.01475 0.95031 1.23059 0.90715 1.03876 1.04127 0.94480 0.91897 0.96466 0.96320 0.91953 0.94480 0.93026 0.94389 0.94715 0.75547 0.87881 0.95947 0.83496 0.85582 0.91111 0.92114 0.86464 0.89203 0.87591 0.87644 0.89170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.35 8.08 71.98 0.58 -4.77 16 2 C 0.05 2.37 0.50 -52.93 -0.03 2.35 16 3 C -0.12 -5.30 8.08 71.98 0.58 -4.72 16 4 C -0.53 -28.21 8.01 25.60 0.21 -28.01 16 5 H 0.04 2.36 7.74 -2.91 -0.02 2.34 16 6 C 0.03 1.52 5.15 84.65 0.44 1.95 16 7 N -0.90 -48.02 9.35 21.45 0.20 -47.82 16 8 Si 0.94 42.76 29.54 68.60 2.03 44.79 16 9 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 10 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 11 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 12 C 0.15 6.34 4.51 86.38 0.39 6.73 16 13 N -0.71 -24.46 4.96 -463.06 -2.29 -26.75 16 14 C 0.51 16.87 6.02 87.66 0.53 17.39 16 15 O -0.59 -24.23 16.02 -3.04 -0.05 -24.28 16 16 C -0.09 -2.17 2.35 -11.54 -0.03 -2.19 16 17 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 18 C 0.08 1.83 5.89 86.30 0.51 2.34 16 19 N -0.85 -19.50 9.57 -186.73 -1.79 -21.29 16 20 C -0.07 -1.48 4.95 30.59 0.15 -1.33 16 21 C -0.15 -2.38 4.64 -10.79 -0.05 -2.43 16 22 C -0.18 -2.48 10.18 30.62 0.31 -2.17 16 23 C -0.18 -2.58 10.25 30.62 0.31 -2.27 16 24 H 0.04 1.38 6.86 -2.39 -0.02 1.37 16 25 H 0.06 3.12 6.07 -2.39 -0.01 3.11 16 26 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.02 0.81 8.14 -2.39 -0.02 0.80 16 28 H 0.06 3.10 6.07 -2.39 -0.01 3.08 16 29 H 0.04 1.39 6.86 -2.39 -0.02 1.37 16 30 H 0.26 13.39 8.31 -92.70 -0.77 12.62 16 31 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.03 1.60 8.14 -2.38 -0.02 1.58 16 33 H 0.41 12.49 6.16 -92.71 -0.57 11.91 16 34 H 0.10 1.79 7.22 -2.39 -0.02 1.78 16 35 H 0.02 0.57 7.67 -2.39 -0.02 0.56 16 36 H 0.35 6.37 9.08 -89.69 -0.81 5.56 16 37 H 0.33 9.11 8.13 -89.70 -0.73 8.38 16 38 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.06 1.38 7.88 -2.39 -0.02 1.37 16 40 H 0.12 1.66 8.08 -2.39 -0.02 1.64 16 41 H 0.09 1.33 8.03 -2.39 -0.02 1.31 16 42 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 44 H 0.09 1.35 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -59.91 346.78 0.88 -59.03 By element: Atomic # 1 Polarization: 34.54 SS G_CDS: -1.12 Total: 33.42 kcal Atomic # 6 Polarization: -21.01 SS G_CDS: 3.90 Total: -17.11 kcal Atomic # 7 Polarization: -91.97 SS G_CDS: -3.88 Total: -95.86 kcal Atomic # 8 Polarization: -24.23 SS G_CDS: -0.05 Total: -24.28 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Total: -59.91 0.88 -59.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404710400.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.399 kcal (2) G-P(sol) polarization free energy of solvation -59.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds