Wall clock time and date at job start Mon Mar 30 2020 05:05:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47270 * 2 1 4 4 C 1.50696 * 109.47432 * 120.00481 * 2 1 3 5 5 H 1.08004 * 120.00484 * 114.23170 * 4 2 1 6 6 C 1.37882 * 120.00211 * 294.23859 * 4 2 1 7 7 N 1.31513 * 120.00140 * 209.34331 * 6 4 2 8 8 Si 1.86797 * 119.99592 * 29.34242 * 6 4 2 9 9 H 1.48506 * 109.46875 * 180.02562 * 8 6 4 10 10 H 1.48496 * 109.47616 * 60.00384 * 8 6 4 11 11 H 1.48503 * 109.47427 * 300.00143 * 8 6 4 12 12 C 1.53004 * 109.46905 * 240.00458 * 2 1 3 13 13 N 1.46498 * 109.47038 * 59.99748 * 12 2 1 14 14 C 1.34779 * 119.99708 * 179.97438 * 13 12 2 15 15 O 1.21274 * 120.00142 * 0.02562 * 14 13 12 16 16 C 1.50704 * 119.99589 * 180.02562 * 14 13 12 17 17 C 1.53004 * 109.46919 * 180.02562 * 16 14 13 18 18 H 1.08999 * 110.01683 * 305.70292 * 17 16 14 19 19 C 1.54266 * 110.03103 * 67.08867 * 17 16 14 20 20 C 1.54896 * 104.19178 * 142.89347 * 19 17 16 21 21 C 1.54887 * 102.75116 * 322.05941 * 20 19 17 22 22 C 1.53873 * 110.03174 * 184.30991 * 17 16 14 23 23 H 1.09000 * 110.02932 * 121.43010 * 22 17 16 24 24 N 1.46892 * 110.03316 * 359.97438 * 22 17 16 25 25 H 1.09005 * 109.47219 * 295.40031 * 1 2 3 26 26 H 1.08998 * 109.47325 * 55.40435 * 1 2 3 27 27 H 1.09006 * 109.47262 * 175.40559 * 1 2 3 28 28 H 1.09001 * 109.47398 * 185.31227 * 3 2 1 29 29 H 1.09000 * 109.47333 * 305.32309 * 3 2 1 30 30 H 1.09006 * 109.46401 * 65.31877 * 3 2 1 31 31 H 0.96996 * 119.99717 * 354.99375 * 7 6 4 32 32 H 1.09000 * 109.46887 * 179.97438 * 12 2 1 33 33 H 1.09001 * 109.47138 * 299.99834 * 12 2 1 34 34 H 0.97001 * 120.00129 * 0.02562 * 13 12 2 35 35 H 1.09000 * 109.47281 * 299.99954 * 16 14 13 36 36 H 1.09001 * 109.47289 * 60.00271 * 16 14 13 37 37 H 1.08998 * 110.49116 * 261.57353 * 19 17 16 38 38 H 1.08997 * 110.48607 * 24.09067 * 19 17 16 39 39 H 1.09000 * 110.75213 * 80.37733 * 20 19 17 40 40 H 1.09000 * 110.75832 * 203.74422 * 20 19 17 41 41 H 1.09005 * 110.48730 * 156.61810 * 21 20 19 42 42 H 1.08996 * 110.49052 * 279.13168 * 21 20 19 43 43 H 1.00901 * 111.00058 * 179.97438 * 24 22 17 44 44 H 1.00898 * 111.00132 * 303.95346 * 24 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.5743 -1.6397 1.1340 6 6 1.8000 -0.1744 2.4792 7 7 2.6478 -0.3988 3.4593 8 14 0.2811 0.8707 2.7791 9 1 0.2638 1.3246 4.1930 10 1 -0.9359 0.0663 2.5021 11 1 0.3082 2.0528 1.8806 12 6 2.0399 -0.7212 -1.2493 13 7 1.5515 -0.0305 -2.4454 14 6 1.8775 -0.4906 -3.6696 15 8 2.5747 -1.4766 -3.7809 16 6 1.3755 0.2203 -4.9000 17 6 1.8854 -0.5010 -6.1493 18 1 2.9705 -0.5956 -6.1088 19 6 1.2370 -1.8967 -6.2553 20 6 1.0045 -2.0931 -7.7741 21 6 0.5829 -0.6778 -8.2412 22 6 1.4707 0.2747 -7.4119 23 1 2.3545 0.5558 -7.9845 24 7 0.7094 1.4741 -7.0382 25 1 -0.3634 0.4408 0.9284 26 1 -0.3634 0.5835 -0.8459 27 1 -0.3634 -1.0244 -0.0823 28 1 3.1258 1.4440 -0.0951 29 1 1.6010 1.9831 -0.8385 30 1 1.7565 1.9280 0.9339 31 1 3.3971 -0.9998 3.3242 32 1 3.1299 -0.7208 -1.2496 33 1 1.6766 -1.7489 -1.2494 34 1 0.9941 0.7584 -2.3563 35 1 0.2855 0.2203 -4.9003 36 1 1.7389 1.2479 -4.8996 37 1 1.9120 -2.6613 -5.8707 38 1 0.2898 -1.9193 -5.7164 39 1 1.9245 -2.4051 -8.2685 40 1 0.2055 -2.8128 -7.9527 41 1 0.7807 -0.5528 -9.3058 42 1 -0.4715 -0.5037 -8.0270 43 1 0.4301 1.9946 -7.8562 44 1 -0.0903 1.2330 -6.4722 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000405466997.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:30 Heat of formation + Delta-G solvation = -72.818147 kcal Electronic energy + Delta-G solvation = -21326.456506 eV Core-core repulsion = 18277.002378 eV Total energy + Delta-G solvation = -3049.454128 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.09696 -39.49513 -38.19665 -35.02520 -33.52531 -33.34639 -32.31448 -28.17220 -27.97315 -27.26934 -26.66505 -25.64586 -21.85130 -21.53095 -20.99254 -19.87235 -19.01518 -18.36342 -17.11361 -16.77023 -16.45303 -16.32259 -15.97872 -15.44456 -15.07734 -14.90119 -14.49331 -14.38739 -14.20621 -13.98771 -13.94435 -13.58838 -13.28869 -13.05373 -12.79438 -12.45245 -12.01651 -11.98883 -11.90210 -11.86413 -11.68954 -11.66890 -11.55899 -11.42537 -11.01230 -10.75958 -10.63510 -10.19011 -9.96206 -9.46817 -8.80085 -6.32096 1.44270 1.52867 1.75618 1.77605 2.38347 2.47841 3.01669 3.57795 3.60558 3.78231 4.02765 4.04014 4.16530 4.29457 4.34545 4.45123 4.46641 4.54766 4.60785 4.67161 4.77120 4.81187 4.84345 4.86894 4.91121 4.94157 5.00997 5.07959 5.11356 5.17427 5.19957 5.32954 5.41442 5.46886 5.49537 5.57991 5.78895 6.01545 6.17522 6.34317 6.58051 6.71763 6.72378 7.40270 7.42426 8.58654 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.038410 B = 0.003881 C = 0.003740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.806776 B = 7213.691034 C = 7485.614842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.032 3.968 3 C -0.137 4.137 4 C -0.617 4.617 5 H 0.009 0.991 6 C -0.010 4.010 7 N -0.926 5.926 8 Si 1.094 2.906 9 H -0.311 1.311 10 H -0.265 1.265 11 H -0.232 1.232 12 C 0.160 3.840 13 N -0.714 5.714 14 C 0.497 3.503 15 O -0.593 6.593 16 C -0.109 4.109 17 C -0.071 4.071 18 H 0.056 0.944 19 C -0.116 4.116 20 C -0.122 4.122 21 C -0.149 4.149 22 C 0.099 3.901 23 H 0.083 0.917 24 N -0.845 5.845 25 H 0.039 0.961 26 H 0.074 0.926 27 H 0.043 0.957 28 H 0.027 0.973 29 H 0.068 0.932 30 H 0.047 0.953 31 H 0.253 0.747 32 H 0.026 0.974 33 H 0.033 0.967 34 H 0.412 0.588 35 H 0.113 0.887 36 H 0.118 0.882 37 H 0.043 0.957 38 H 0.059 0.941 39 H 0.065 0.935 40 H 0.070 0.930 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.349 0.651 44 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.598 6.147 -24.210 26.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.030 3.970 3 C -0.195 4.195 4 C -0.654 4.654 5 H 0.028 0.972 6 C -0.210 4.210 7 N -0.560 5.560 8 Si 0.920 3.080 9 H -0.240 1.240 10 H -0.192 1.192 11 H -0.157 1.157 12 C 0.035 3.965 13 N -0.366 5.366 14 C 0.285 3.715 15 O -0.474 6.474 16 C -0.149 4.149 17 C -0.091 4.091 18 H 0.075 0.925 19 C -0.154 4.154 20 C -0.160 4.160 21 C -0.189 4.189 22 C -0.013 4.013 23 H 0.101 0.899 24 N -0.376 5.376 25 H 0.057 0.943 26 H 0.092 0.908 27 H 0.062 0.938 28 H 0.047 0.953 29 H 0.087 0.913 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.045 0.955 33 H 0.051 0.949 34 H 0.250 0.750 35 H 0.131 0.869 36 H 0.136 0.864 37 H 0.061 0.939 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.095 0.905 42 H 0.092 0.908 43 H 0.164 0.836 44 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -9.174 6.606 -22.780 25.430 hybrid contribution 0.714 -2.054 -0.800 2.317 sum -8.459 4.552 -23.579 25.461 Atomic orbital electron populations 1.22254 0.96495 1.01043 1.00511 1.18588 0.93381 0.93460 0.91541 1.22131 0.99653 0.96647 1.01045 1.21878 1.40254 1.09959 0.93339 0.97211 1.27207 1.01809 0.99502 0.92505 1.71018 1.13025 1.33145 1.38799 0.83669 0.72873 0.76803 0.74668 1.24022 1.19156 1.15698 1.20946 0.96453 0.94830 0.84251 1.46125 1.53244 1.32113 1.05124 1.21715 0.79589 0.84281 0.85901 1.90650 1.40342 1.28839 1.87583 1.21617 1.03124 1.01013 0.89151 1.21532 0.99765 0.94319 0.93480 0.92517 1.22368 0.99717 0.96540 0.96807 1.22449 1.01376 0.97585 0.94633 1.23200 0.99997 0.95133 1.00543 1.22017 0.96835 0.89096 0.93391 0.89927 1.58980 1.30262 1.22675 1.25692 0.94258 0.90756 0.93783 0.95328 0.91312 0.93430 0.93817 0.95541 0.94861 0.75037 0.86900 0.86382 0.93856 0.92219 0.91609 0.91114 0.90527 0.90782 0.83642 0.83829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.46 7.74 71.98 0.56 -4.91 16 2 C 0.03 1.39 0.50 -52.93 -0.03 1.37 16 3 C -0.14 -5.46 7.90 71.98 0.57 -4.89 16 4 C -0.62 -34.83 8.42 25.60 0.22 -34.62 16 5 H 0.01 0.61 7.99 -2.91 -0.02 0.59 16 6 C -0.01 -0.60 5.06 84.66 0.43 -0.17 16 7 N -0.93 -58.04 13.70 21.45 0.29 -57.75 16 8 Si 1.09 48.92 23.53 68.60 1.61 50.54 16 9 H -0.31 -14.49 7.11 99.48 0.71 -13.78 16 10 H -0.26 -10.85 6.69 99.48 0.67 -10.18 16 11 H -0.23 -8.76 5.73 99.48 0.57 -8.19 16 12 C 0.16 6.75 4.51 86.38 0.39 7.14 16 13 N -0.71 -22.50 5.02 -463.05 -2.32 -24.83 16 14 C 0.50 15.58 7.61 87.66 0.67 16.24 16 15 O -0.59 -24.18 14.78 -3.01 -0.04 -24.23 16 16 C -0.11 -2.23 3.95 29.85 0.12 -2.11 16 17 C -0.07 -1.49 2.55 -10.07 -0.03 -1.52 16 18 H 0.06 1.48 7.95 -2.39 -0.02 1.46 16 19 C -0.12 -2.59 5.39 31.67 0.17 -2.42 16 20 C -0.12 -1.98 6.91 31.89 0.22 -1.76 16 21 C -0.15 -1.80 6.52 31.71 0.21 -1.59 16 22 C 0.10 1.41 4.03 45.68 0.18 1.59 16 23 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 24 N -0.84 -9.33 7.95 -165.53 -1.32 -10.64 16 25 H 0.04 1.51 2.27 -2.38 -0.01 1.50 16 26 H 0.07 2.08 7.00 -2.39 -0.02 2.06 16 27 H 0.04 1.68 8.14 -2.38 -0.02 1.66 16 28 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.07 2.08 7.02 -2.39 -0.02 2.06 16 30 H 0.05 1.97 4.40 -2.38 -0.01 1.96 16 31 H 0.25 16.20 8.73 -92.71 -0.81 15.39 16 32 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.03 1.53 8.14 -2.39 -0.02 1.52 16 34 H 0.41 10.16 6.24 -92.71 -0.58 9.59 16 35 H 0.11 1.69 6.93 -2.39 -0.02 1.68 16 36 H 0.12 2.17 7.61 -2.39 -0.02 2.15 16 37 H 0.04 1.24 7.63 -2.39 -0.02 1.22 16 38 H 0.06 1.31 7.77 -2.39 -0.02 1.29 16 39 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.08 0.77 8.14 -2.38 -0.02 0.75 16 42 H 0.07 0.77 8.02 -2.39 -0.02 0.75 16 43 H 0.35 2.71 9.07 -89.69 -0.81 1.90 16 44 H 0.35 3.21 7.24 -89.70 -0.65 2.56 16 Total: -1.00 -71.58 326.58 0.65 -70.93 By element: Atomic # 1 Polarization: 24.86 SS G_CDS: -1.24 Total: 23.61 kcal Atomic # 6 Polarization: -31.31 SS G_CDS: 3.67 Total: -27.64 kcal Atomic # 7 Polarization: -89.87 SS G_CDS: -3.35 Total: -93.22 kcal Atomic # 8 Polarization: -24.18 SS G_CDS: -0.04 Total: -24.23 kcal Atomic # 14 Polarization: 48.92 SS G_CDS: 1.61 Total: 50.54 kcal Total: -71.58 0.65 -70.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405466997.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.887 kcal (2) G-P(sol) polarization free energy of solvation -71.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds