Wall clock time and date at job start Mon Mar 30 2020 05:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.47075 * 2 1 4 4 C 1.50704 * 109.46957 * 120.00342 * 2 1 3 5 5 H 1.08000 * 119.99431 * 117.90620 * 4 2 1 6 6 C 1.37869 * 119.99670 * 297.90288 * 4 2 1 7 7 N 1.31515 * 120.00408 * 7.60513 * 6 4 2 8 8 Si 1.86807 * 119.99964 * 187.60399 * 6 4 2 9 9 H 1.48500 * 109.46722 * 265.12340 * 8 6 4 10 10 H 1.48499 * 109.47095 * 145.12403 * 8 6 4 11 11 H 1.48502 * 109.46914 * 25.12223 * 8 6 4 12 12 C 1.52999 * 109.46626 * 240.00061 * 2 1 3 13 13 N 1.46502 * 109.47601 * 60.00351 * 12 2 1 14 14 C 1.34776 * 120.00301 * 179.97438 * 13 12 2 15 15 O 1.21278 * 120.00140 * 0.02562 * 14 13 12 16 16 C 1.50701 * 120.00002 * 179.97438 * 14 13 12 17 17 C 1.53000 * 109.46963 * 180.02562 * 16 14 13 18 18 H 1.08998 * 110.02035 * 54.30051 * 17 16 14 19 19 C 1.54266 * 110.02846 * 292.90750 * 17 16 14 20 20 C 1.54973 * 104.15764 * 217.13987 * 19 17 16 21 21 C 1.54891 * 102.77643 * 37.88740 * 20 19 17 22 22 C 1.53879 * 110.02980 * 175.69277 * 17 16 14 23 23 H 1.09005 * 110.03063 * 238.56823 * 22 17 16 24 24 N 1.46899 * 110.03111 * 359.94742 * 22 17 16 25 25 H 1.09000 * 109.46810 * 305.79062 * 1 2 3 26 26 H 1.08999 * 109.47030 * 65.79209 * 1 2 3 27 27 H 1.08998 * 109.47195 * 185.79346 * 1 2 3 28 28 H 1.09001 * 109.46821 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.47123 * 300.00323 * 3 2 1 30 30 H 1.08997 * 109.47247 * 60.00348 * 3 2 1 31 31 H 0.96999 * 120.00331 * 179.97438 * 7 6 4 32 32 H 1.09001 * 109.46790 * 180.02562 * 12 2 1 33 33 H 1.09000 * 109.47771 * 299.99440 * 12 2 1 34 34 H 0.97001 * 119.99206 * 359.97438 * 13 12 2 35 35 H 1.09001 * 109.47306 * 300.00376 * 16 14 13 36 36 H 1.08999 * 109.46778 * 59.99870 * 16 14 13 37 37 H 1.09000 * 110.49097 * 335.78118 * 19 17 16 38 38 H 1.08998 * 110.48677 * 98.43224 * 19 17 16 39 39 H 1.09001 * 110.71742 * 279.57445 * 20 19 17 40 40 H 1.09000 * 110.76585 * 156.22415 * 20 19 17 41 41 H 1.08995 * 110.48335 * 203.40608 * 21 20 19 42 42 H 1.09004 * 110.48105 * 80.76522 * 21 20 19 43 43 H 1.00903 * 110.99774 * 179.97438 * 24 22 17 44 44 H 1.00893 * 111.00281 * 303.95724 * 24 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6250 -1.6079 1.1316 6 6 1.7353 -0.2148 2.4822 7 7 0.8931 0.7872 2.6098 8 14 2.5290 -0.9665 3.9970 9 1 1.6223 -1.9914 4.5738 10 1 2.7790 0.0962 5.0037 11 1 3.8165 -1.6017 3.6175 12 6 2.0399 -0.7213 -1.2493 13 7 1.5516 -0.0306 -2.4455 14 6 1.8776 -0.4908 -3.6696 15 8 2.5747 -1.4769 -3.7809 16 6 1.3748 0.2193 -4.9000 17 6 1.8848 -0.5019 -6.1493 18 1 1.6122 -1.5565 -6.1088 19 6 3.4169 -0.3558 -6.2552 20 6 3.6788 -0.2014 -7.7748 21 6 2.4841 0.6668 -8.2418 22 6 1.2919 0.1477 -7.4119 23 1 0.7321 -0.5919 -7.9846 24 7 0.4134 1.2642 -7.0382 25 1 -0.3633 0.6010 0.8336 26 1 -0.3633 0.4214 -0.9373 27 1 -0.3633 -1.0224 0.1037 28 1 3.1300 1.4424 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6768 1.9563 0.8900 31 1 0.6838 1.1357 3.4905 32 1 3.1299 -0.7217 -1.2491 33 1 1.6767 -1.7490 -1.2493 34 1 0.9937 0.7579 -2.3564 35 1 0.2848 0.2186 -4.9001 36 1 1.7375 1.2472 -4.8999 37 1 3.7537 0.5309 -5.7183 38 1 3.9126 -1.2471 -5.8706 39 1 3.6666 -1.1729 -8.2689 40 1 4.6232 0.3125 -7.9540 41 1 2.3000 0.5216 -9.3062 42 1 2.6699 1.7190 -8.0259 43 1 0.0165 1.7015 -7.8563 44 1 -0.3097 0.9588 -6.4042 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000405467005.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:36 Heat of formation + Delta-G solvation = -59.905722 kcal Electronic energy + Delta-G solvation = -21229.947461 eV Core-core repulsion = 18181.053258 eV Total energy + Delta-G solvation = -3048.894203 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.75963 -38.20485 -36.24386 -33.22154 -32.80227 -31.51534 -30.62777 -26.81286 -26.17110 -25.70759 -25.32649 -24.12350 -20.93995 -20.16136 -18.98665 -18.63939 -17.27122 -16.06881 -15.71637 -15.36894 -15.20819 -14.94546 -14.65646 -14.38899 -14.01467 -13.46574 -13.05110 -12.84403 -12.65249 -12.15227 -11.88030 -11.61074 -11.37473 -11.19079 -11.14575 -11.00122 -10.93765 -10.84196 -10.67718 -10.61346 -10.53112 -10.35543 -10.18668 -9.60060 -9.44303 -9.12549 -8.84322 -8.77605 -8.39307 -8.23020 -6.01176 -4.09306 3.19555 3.28870 3.36503 3.41318 3.84677 4.33659 4.42048 4.49140 4.56567 4.93175 5.23398 5.25710 5.26050 5.33031 5.36388 5.53254 5.62095 5.72480 5.84837 5.88634 5.99909 6.03495 6.17410 6.28997 6.35770 6.37504 6.45059 6.54772 6.82941 6.85208 6.96864 7.00867 7.04287 7.11963 7.23959 7.38877 7.57737 7.71867 8.01444 8.12153 8.22079 8.40926 8.82525 8.91698 9.55802 11.00775 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.040645 B = 0.003654 C = 0.003500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.722011 B = 7659.948731 C = 7998.805138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.055 3.945 3 C -0.129 4.129 4 C -0.508 4.508 5 H 0.057 0.943 6 C 0.067 3.933 7 N -0.884 5.884 8 Si 0.891 3.109 9 H -0.282 1.282 10 H -0.286 1.286 11 H -0.274 1.274 12 C 0.132 3.868 13 N -0.719 5.719 14 C 0.499 3.501 15 O -0.555 6.555 16 C -0.121 4.121 17 C -0.070 4.070 18 H 0.076 0.924 19 C -0.108 4.108 20 C -0.126 4.126 21 C -0.118 4.118 22 C 0.087 3.913 23 H 0.036 0.964 24 N -0.843 5.843 25 H 0.085 0.915 26 H 0.004 0.996 27 H 0.027 0.973 28 H 0.027 0.973 29 H 0.008 0.992 30 H 0.080 0.920 31 H 0.259 0.741 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.397 0.603 35 H 0.083 0.917 36 H 0.100 0.900 37 H 0.063 0.937 38 H 0.074 0.926 39 H 0.063 0.937 40 H 0.065 0.935 41 H 0.058 0.942 42 H 0.076 0.924 43 H 0.336 0.664 44 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.159 2.267 -18.472 18.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.054 3.946 3 C -0.187 4.187 4 C -0.546 4.546 5 H 0.075 0.925 6 C -0.134 4.134 7 N -0.523 5.523 8 Si 0.719 3.281 9 H -0.208 1.208 10 H -0.212 1.212 11 H -0.198 1.198 12 C 0.010 3.990 13 N -0.370 5.370 14 C 0.285 3.715 15 O -0.434 6.434 16 C -0.162 4.162 17 C -0.089 4.089 18 H 0.095 0.905 19 C -0.146 4.146 20 C -0.164 4.164 21 C -0.156 4.156 22 C -0.024 4.024 23 H 0.054 0.946 24 N -0.375 5.375 25 H 0.103 0.897 26 H 0.023 0.977 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.027 0.973 30 H 0.099 0.901 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.232 0.768 35 H 0.101 0.899 36 H 0.118 0.882 37 H 0.082 0.918 38 H 0.093 0.907 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.076 0.924 42 H 0.095 0.905 43 H 0.148 0.852 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -0.094 1.994 -18.060 18.170 hybrid contribution -0.724 -0.554 0.522 1.051 sum -0.818 1.440 -17.538 17.616 Atomic orbital electron populations 1.21852 0.97676 1.00092 0.98965 1.18357 0.92854 0.92653 0.90695 1.21784 0.98577 0.98376 0.99913 1.20985 1.33015 1.10650 0.89956 0.92481 1.24871 0.94674 0.95086 0.98771 1.69846 1.33185 1.26114 1.23144 0.86600 0.79951 0.78821 0.82763 1.20846 1.21194 1.19838 1.21648 0.98014 0.95696 0.83670 1.46348 1.52699 1.31807 1.06149 1.20782 0.80760 0.84867 0.85112 1.90638 1.38747 1.26905 1.87094 1.21593 1.01469 1.01130 0.92003 1.21559 0.96099 0.99162 0.92084 0.90540 1.22349 0.94787 1.02467 0.95005 1.22502 0.97744 0.99467 0.96706 1.22431 0.94405 1.00643 0.98087 1.22058 0.93856 0.91225 0.95286 0.94617 1.59029 1.26275 1.31715 1.20470 0.89673 0.97681 0.95366 0.95417 0.97253 0.90149 0.93074 0.92915 0.92978 0.76794 0.89903 0.88214 0.91789 0.90710 0.91783 0.91632 0.92371 0.90499 0.85159 0.84355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.91 8.08 37.16 0.30 -2.61 16 2 C 0.06 1.29 0.50 -155.66 -0.08 1.21 16 3 C -0.13 -2.91 8.06 37.15 0.30 -2.62 16 4 C -0.51 -13.44 8.00 -34.44 -0.28 -13.72 16 5 H 0.06 1.53 7.76 -52.49 -0.41 1.12 16 6 C 0.07 1.79 5.11 -17.82 -0.09 1.70 16 7 N -0.88 -23.72 9.48 55.43 0.53 -23.20 16 8 Si 0.89 20.85 29.54 -169.99 -5.02 15.83 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 11 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 12 C 0.13 2.86 4.50 -4.04 -0.02 2.84 16 13 N -0.72 -12.85 4.91 -60.29 -0.30 -13.15 16 14 C 0.50 8.52 7.61 -10.99 -0.08 8.44 16 15 O -0.55 -11.35 14.78 5.56 0.08 -11.27 16 16 C -0.12 -1.52 4.03 -27.88 -0.11 -1.63 16 17 C -0.07 -0.83 2.55 -89.50 -0.23 -1.06 16 18 H 0.08 1.02 7.95 -51.93 -0.41 0.61 16 19 C -0.11 -1.35 5.40 -25.03 -0.14 -1.49 16 20 C -0.13 -1.24 6.91 -24.69 -0.17 -1.41 16 21 C -0.12 -1.06 6.53 -25.07 -0.16 -1.22 16 22 C 0.09 0.83 4.02 -66.60 -0.27 0.56 16 23 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 24 N -0.84 -7.00 8.14 -3.72 -0.03 -7.03 16 25 H 0.08 2.13 6.16 -51.93 -0.32 1.81 16 26 H 0.00 0.08 6.72 -51.93 -0.35 -0.26 16 27 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.01 0.17 6.86 -51.93 -0.36 -0.19 16 30 H 0.08 2.00 6.21 -51.93 -0.32 1.68 16 31 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 32 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 34 H 0.40 6.43 6.16 -40.82 -0.25 6.18 16 35 H 0.08 0.88 6.53 -51.93 -0.34 0.54 16 36 H 0.10 1.22 7.86 -51.93 -0.41 0.81 16 37 H 0.06 0.84 7.77 -51.93 -0.40 0.44 16 38 H 0.07 1.07 7.63 -51.93 -0.40 0.68 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.08 0.73 8.05 -51.93 -0.42 0.31 16 43 H 0.34 2.24 9.07 -39.29 -0.36 1.89 16 44 H 0.34 2.63 7.06 -39.30 -0.28 2.35 16 LS Contribution 334.70 15.07 5.04 5.04 Total: -1.00 -28.42 334.70 -8.26 -36.68 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: -7.53 Total: 8.11 kcal Atomic # 6 Polarization: -10.00 SS G_CDS: -1.03 Total: -11.03 kcal Atomic # 7 Polarization: -43.57 SS G_CDS: 0.20 Total: -43.37 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: 0.08 Total: -11.27 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -28.42 -8.26 -36.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405467005.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.228 kcal (2) G-P(sol) polarization free energy of solvation -28.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds