Wall clock time and date at job start Mon Mar 30 2020 05:05:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.47075 * 2 1 4 4 C 1.50704 * 109.46957 * 120.00342 * 2 1 3 5 5 H 1.08000 * 119.99431 * 117.90620 * 4 2 1 6 6 C 1.37869 * 119.99670 * 297.90288 * 4 2 1 7 7 N 1.31515 * 120.00408 * 7.60513 * 6 4 2 8 8 Si 1.86807 * 119.99964 * 187.60399 * 6 4 2 9 9 H 1.48500 * 109.46722 * 265.12340 * 8 6 4 10 10 H 1.48499 * 109.47095 * 145.12403 * 8 6 4 11 11 H 1.48502 * 109.46914 * 25.12223 * 8 6 4 12 12 C 1.52999 * 109.46626 * 240.00061 * 2 1 3 13 13 N 1.46502 * 109.47601 * 60.00351 * 12 2 1 14 14 C 1.34776 * 120.00301 * 179.97438 * 13 12 2 15 15 O 1.21278 * 120.00140 * 0.02562 * 14 13 12 16 16 C 1.50701 * 120.00002 * 179.97438 * 14 13 12 17 17 C 1.53000 * 109.46963 * 180.02562 * 16 14 13 18 18 H 1.08998 * 110.02035 * 54.30051 * 17 16 14 19 19 C 1.54266 * 110.02846 * 292.90750 * 17 16 14 20 20 C 1.54973 * 104.15764 * 217.13987 * 19 17 16 21 21 C 1.54891 * 102.77643 * 37.88740 * 20 19 17 22 22 C 1.53879 * 110.02980 * 175.69277 * 17 16 14 23 23 H 1.09005 * 110.03063 * 238.56823 * 22 17 16 24 24 N 1.46899 * 110.03111 * 359.94742 * 22 17 16 25 25 H 1.09000 * 109.46810 * 305.79062 * 1 2 3 26 26 H 1.08999 * 109.47030 * 65.79209 * 1 2 3 27 27 H 1.08998 * 109.47195 * 185.79346 * 1 2 3 28 28 H 1.09001 * 109.46821 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.47123 * 300.00323 * 3 2 1 30 30 H 1.08997 * 109.47247 * 60.00348 * 3 2 1 31 31 H 0.96999 * 120.00331 * 179.97438 * 7 6 4 32 32 H 1.09001 * 109.46790 * 180.02562 * 12 2 1 33 33 H 1.09000 * 109.47771 * 299.99440 * 12 2 1 34 34 H 0.97001 * 119.99206 * 359.97438 * 13 12 2 35 35 H 1.09001 * 109.47306 * 300.00376 * 16 14 13 36 36 H 1.08999 * 109.46778 * 59.99870 * 16 14 13 37 37 H 1.09000 * 110.49097 * 335.78118 * 19 17 16 38 38 H 1.08998 * 110.48677 * 98.43224 * 19 17 16 39 39 H 1.09001 * 110.71742 * 279.57445 * 20 19 17 40 40 H 1.09000 * 110.76585 * 156.22415 * 20 19 17 41 41 H 1.08995 * 110.48335 * 203.40608 * 21 20 19 42 42 H 1.09004 * 110.48105 * 80.76522 * 21 20 19 43 43 H 1.00903 * 110.99774 * 179.97438 * 24 22 17 44 44 H 1.00893 * 111.00281 * 303.95724 * 24 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6250 -1.6079 1.1316 6 6 1.7353 -0.2148 2.4822 7 7 0.8931 0.7872 2.6098 8 14 2.5290 -0.9665 3.9970 9 1 1.6223 -1.9914 4.5738 10 1 2.7790 0.0962 5.0037 11 1 3.8165 -1.6017 3.6175 12 6 2.0399 -0.7213 -1.2493 13 7 1.5516 -0.0306 -2.4455 14 6 1.8776 -0.4908 -3.6696 15 8 2.5747 -1.4769 -3.7809 16 6 1.3748 0.2193 -4.9000 17 6 1.8848 -0.5019 -6.1493 18 1 1.6122 -1.5565 -6.1088 19 6 3.4169 -0.3558 -6.2552 20 6 3.6788 -0.2014 -7.7748 21 6 2.4841 0.6668 -8.2418 22 6 1.2919 0.1477 -7.4119 23 1 0.7321 -0.5919 -7.9846 24 7 0.4134 1.2642 -7.0382 25 1 -0.3633 0.6010 0.8336 26 1 -0.3633 0.4214 -0.9373 27 1 -0.3633 -1.0224 0.1037 28 1 3.1300 1.4424 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6768 1.9563 0.8900 31 1 0.6838 1.1357 3.4905 32 1 3.1299 -0.7217 -1.2491 33 1 1.6767 -1.7490 -1.2493 34 1 0.9937 0.7579 -2.3564 35 1 0.2848 0.2186 -4.9001 36 1 1.7375 1.2472 -4.8999 37 1 3.7537 0.5309 -5.7183 38 1 3.9126 -1.2471 -5.8706 39 1 3.6666 -1.1729 -8.2689 40 1 4.6232 0.3125 -7.9540 41 1 2.3000 0.5216 -9.3062 42 1 2.6699 1.7190 -8.0259 43 1 0.0165 1.7015 -7.8563 44 1 -0.3097 0.9588 -6.4042 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000405467005.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:35 Heat of formation + Delta-G solvation = -78.035346 kcal Electronic energy + Delta-G solvation = -21230.733621 eV Core-core repulsion = 18181.053258 eV Total energy + Delta-G solvation = -3049.680363 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.01532 -39.33583 -37.96845 -34.93821 -33.57763 -32.92345 -32.08503 -27.93743 -27.56241 -27.37532 -27.07744 -25.56189 -21.91579 -21.41969 -20.59292 -19.78893 -18.55359 -17.74517 -16.98503 -16.69979 -16.46962 -16.15860 -15.95993 -15.74369 -14.84280 -14.80187 -14.78739 -14.42601 -14.00054 -13.92917 -13.26088 -13.09077 -12.88882 -12.66406 -12.60223 -12.39568 -12.23628 -12.13932 -12.02313 -11.82380 -11.73690 -11.55869 -11.47947 -11.46379 -11.23485 -10.76759 -10.60002 -10.37380 -9.86129 -9.48666 -8.03497 -6.17433 1.41045 1.44562 1.53622 1.81387 2.38307 2.54356 3.20182 3.61001 3.64364 3.72527 4.04197 4.10617 4.42103 4.43787 4.47518 4.52919 4.55484 4.61107 4.71999 4.76565 4.91897 4.94553 5.00966 5.06299 5.09689 5.11703 5.14622 5.19736 5.23648 5.34053 5.36841 5.40325 5.53465 5.65690 5.66796 5.68413 6.13892 6.22149 6.36787 6.43309 6.70186 6.77301 6.86351 7.43888 7.49613 8.96000 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.040645 B = 0.003654 C = 0.003500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.722011 B = 7659.948731 C = 7998.805138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.050 3.950 3 C -0.118 4.118 4 C -0.532 4.532 5 H 0.042 0.958 6 C 0.030 3.970 7 N -0.897 5.897 8 Si 0.943 3.057 9 H -0.280 1.280 10 H -0.281 1.281 11 H -0.276 1.276 12 C 0.149 3.851 13 N -0.714 5.714 14 C 0.496 3.504 15 O -0.591 6.591 16 C -0.108 4.108 17 C -0.072 4.072 18 H 0.059 0.941 19 C -0.112 4.112 20 C -0.122 4.122 21 C -0.112 4.112 22 C 0.095 3.905 23 H 0.044 0.956 24 N -0.846 5.846 25 H 0.063 0.937 26 H 0.037 0.963 27 H 0.014 0.986 28 H 0.018 0.982 29 H 0.040 0.960 30 H 0.057 0.943 31 H 0.260 0.740 32 H 0.033 0.967 33 H 0.033 0.967 34 H 0.408 0.592 35 H 0.110 0.890 36 H 0.111 0.889 37 H 0.054 0.946 38 H 0.045 0.955 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.349 0.651 44 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.013 3.377 -20.167 20.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.050 3.950 3 C -0.176 4.176 4 C -0.571 4.571 5 H 0.060 0.940 6 C -0.170 4.170 7 N -0.536 5.536 8 Si 0.769 3.231 9 H -0.206 1.206 10 H -0.206 1.206 11 H -0.201 1.201 12 C 0.025 3.975 13 N -0.366 5.366 14 C 0.284 3.716 15 O -0.473 6.473 16 C -0.147 4.147 17 C -0.091 4.091 18 H 0.077 0.923 19 C -0.150 4.150 20 C -0.160 4.160 21 C -0.150 4.150 22 C -0.017 4.017 23 H 0.062 0.938 24 N -0.379 5.379 25 H 0.082 0.918 26 H 0.056 0.944 27 H 0.033 0.967 28 H 0.037 0.963 29 H 0.059 0.941 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.245 0.755 35 H 0.128 0.872 36 H 0.129 0.871 37 H 0.072 0.928 38 H 0.064 0.936 39 H 0.087 0.913 40 H 0.091 0.909 41 H 0.095 0.905 42 H 0.093 0.907 43 H 0.163 0.837 44 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -0.969 3.129 -19.772 20.041 hybrid contribution -0.439 -0.927 1.038 1.459 sum -1.408 2.202 -18.734 18.915 Atomic orbital electron populations 1.21679 0.96958 0.99045 0.99786 1.18363 0.93361 0.92978 0.90340 1.21625 0.97899 0.97784 1.00292 1.21271 1.33357 1.10722 0.91739 0.93975 1.25436 0.95094 0.95617 1.00842 1.69940 1.33463 1.26563 1.23591 0.85787 0.78970 0.78219 0.80086 1.20573 1.20616 1.20140 1.21181 0.96709 0.94939 0.84696 1.46197 1.52952 1.31998 1.05419 1.21646 0.79715 0.84369 0.85854 1.90631 1.40304 1.28752 1.87579 1.21587 1.02929 1.00762 0.89468 1.21564 0.95804 0.98482 0.93247 0.92268 1.22313 0.95206 1.00571 0.96908 1.22488 0.98766 1.00191 0.94557 1.22401 0.93444 1.00089 0.99049 1.21934 0.94278 0.91704 0.93753 0.93784 1.58972 1.26517 1.31116 1.21320 0.91811 0.94372 0.96671 0.96318 0.94115 0.92381 0.93017 0.94831 0.94812 0.75462 0.87202 0.87077 0.92766 0.93581 0.91307 0.90924 0.90522 0.90714 0.83748 0.83847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.23 8.08 71.98 0.58 -4.65 16 2 C 0.05 2.35 0.50 -52.93 -0.03 2.32 16 3 C -0.12 -5.27 8.06 71.98 0.58 -4.69 16 4 C -0.53 -28.65 8.00 25.60 0.20 -28.44 16 5 H 0.04 2.33 7.76 -2.91 -0.02 2.31 16 6 C 0.03 1.61 5.11 84.65 0.43 2.04 16 7 N -0.90 -48.15 9.48 21.44 0.20 -47.95 16 8 Si 0.94 43.00 29.54 68.60 2.03 45.03 16 9 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 10 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 11 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 12 C 0.15 6.48 4.50 86.38 0.39 6.87 16 13 N -0.71 -24.69 4.91 -463.06 -2.27 -26.97 16 14 C 0.50 16.54 7.61 87.66 0.67 17.21 16 15 O -0.59 -24.56 14.78 -3.02 -0.04 -24.60 16 16 C -0.11 -2.46 4.03 29.85 0.12 -2.34 16 17 C -0.07 -1.61 2.55 -10.07 -0.03 -1.64 16 18 H 0.06 1.54 7.95 -2.39 -0.02 1.53 16 19 C -0.11 -2.76 5.40 31.70 0.17 -2.59 16 20 C -0.12 -2.21 6.91 31.92 0.22 -1.99 16 21 C -0.11 -1.70 6.53 31.67 0.21 -1.49 16 22 C 0.09 1.53 4.02 45.64 0.18 1.72 16 23 H 0.04 0.67 8.14 -2.38 -0.02 0.65 16 24 N -0.85 -11.12 8.14 -165.67 -1.35 -12.46 16 25 H 0.06 3.15 6.16 -2.39 -0.01 3.14 16 26 H 0.04 1.41 6.72 -2.39 -0.02 1.39 16 27 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.04 1.51 6.86 -2.39 -0.02 1.49 16 30 H 0.06 2.87 6.21 -2.39 -0.01 2.85 16 31 H 0.26 13.42 8.31 -92.71 -0.77 12.65 16 32 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.41 12.20 6.16 -92.71 -0.57 11.63 16 35 H 0.11 1.96 6.53 -2.39 -0.02 1.95 16 36 H 0.11 2.39 7.86 -2.39 -0.02 2.37 16 37 H 0.05 1.41 7.77 -2.39 -0.02 1.39 16 38 H 0.05 1.37 7.63 -2.39 -0.02 1.35 16 39 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.07 1.20 8.05 -2.39 -0.02 1.18 16 43 H 0.35 3.38 9.07 -89.69 -0.81 2.56 16 44 H 0.35 4.05 7.06 -89.70 -0.63 3.42 16 Total: -1.00 -61.83 334.70 1.25 -60.58 By element: Atomic # 1 Polarization: 25.07 SS G_CDS: -1.02 Total: 24.05 kcal Atomic # 6 Polarization: -21.38 SS G_CDS: 3.70 Total: -17.68 kcal Atomic # 7 Polarization: -83.96 SS G_CDS: -3.42 Total: -87.38 kcal Atomic # 8 Polarization: -24.56 SS G_CDS: -0.04 Total: -24.60 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Total: -61.83 1.25 -60.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405467005.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.459 kcal (2) G-P(sol) polarization free energy of solvation -61.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds