Wall clock time and date at job start Mon Mar 30 2020 05:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52994 * 109.47220 * 2 1 4 4 C 1.50692 * 109.46978 * 120.00617 * 2 1 3 5 5 H 1.08003 * 120.00272 * 117.90710 * 4 2 1 6 6 C 1.37881 * 119.99987 * 297.90778 * 4 2 1 7 7 N 1.31517 * 119.99673 * 7.59731 * 6 4 2 8 8 Si 1.86801 * 120.00233 * 187.60476 * 6 4 2 9 9 H 1.48505 * 109.46588 * 265.12016 * 8 6 4 10 10 H 1.48498 * 109.47295 * 25.11440 * 8 6 4 11 11 H 1.48495 * 109.47407 * 145.11754 * 8 6 4 12 12 C 1.53002 * 109.46656 * 240.00144 * 2 1 3 13 13 N 1.46497 * 109.47349 * 60.00640 * 12 2 1 14 14 C 1.34783 * 120.00143 * 179.97438 * 13 12 2 15 15 O 1.21281 * 119.99770 * 0.02562 * 14 13 12 16 16 C 1.50700 * 119.99914 * 179.97438 * 14 13 12 17 17 C 1.52998 * 109.46863 * 180.02562 * 16 14 13 18 18 H 1.08999 * 110.02105 * 54.30457 * 17 16 14 19 19 C 1.54266 * 110.03290 * 292.90996 * 17 16 14 20 20 C 1.54968 * 104.16280 * 217.13725 * 19 17 16 21 21 C 1.54895 * 102.77523 * 37.88869 * 20 19 17 22 22 C 1.53877 * 110.02892 * 175.69502 * 17 16 14 23 23 H 1.08993 * 110.03734 * 359.95340 * 22 17 16 24 24 N 1.46901 * 110.02903 * 238.56730 * 22 17 16 25 25 H 1.08995 * 109.46942 * 305.79101 * 1 2 3 26 26 H 1.09008 * 109.46472 * 65.78922 * 1 2 3 27 27 H 1.08996 * 109.46993 * 185.78845 * 1 2 3 28 28 H 1.09002 * 109.47143 * 179.97438 * 3 2 1 29 29 H 1.08995 * 109.47815 * 300.00147 * 3 2 1 30 30 H 1.09000 * 109.46674 * 60.00217 * 3 2 1 31 31 H 0.96997 * 119.99660 * 180.02562 * 7 6 4 32 32 H 1.09004 * 109.46953 * 180.02562 * 12 2 1 33 33 H 1.08997 * 109.47728 * 299.99735 * 12 2 1 34 34 H 0.96997 * 120.00218 * 359.97438 * 13 12 2 35 35 H 1.08997 * 109.47557 * 300.00885 * 16 14 13 36 36 H 1.09001 * 109.46486 * 60.00676 * 16 14 13 37 37 H 1.08997 * 110.48946 * 335.78398 * 19 17 16 38 38 H 1.09003 * 110.48656 * 98.42758 * 19 17 16 39 39 H 1.09000 * 110.71996 * 279.57904 * 20 19 17 40 40 H 1.08994 * 110.92584 * 156.29420 * 20 19 17 41 41 H 1.08997 * 110.48490 * 203.40783 * 21 20 19 42 42 H 1.09004 * 110.59667 * 80.81675 * 21 20 19 43 43 H 1.00900 * 110.99657 * 180.02562 * 24 22 17 44 44 H 1.00899 * 111.00169 * 303.95302 * 24 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6251 -1.6079 1.1316 6 6 1.7352 -0.2149 2.4822 7 7 0.8930 0.7871 2.6098 8 14 2.5289 -0.9666 3.9970 9 1 1.6222 -1.9917 4.5737 10 1 3.8164 -1.6019 3.6175 11 1 2.7789 0.0959 5.0037 12 6 2.0400 -0.7213 -1.2493 13 7 1.5517 -0.0306 -2.4454 14 6 1.8777 -0.4907 -3.6696 15 8 2.5748 -1.4769 -3.7809 16 6 1.3750 0.2195 -4.9000 17 6 1.8850 -0.5017 -6.1493 18 1 1.6122 -1.5563 -6.1088 19 6 3.4170 -0.3558 -6.2552 20 6 3.6790 -0.2014 -7.7748 21 6 2.4845 0.6671 -8.2418 22 6 1.2921 0.1480 -7.4119 23 1 0.6404 0.9765 -7.1347 24 7 0.5378 -0.8486 -8.1837 25 1 -0.3633 0.6010 0.8336 26 1 -0.3632 0.4215 -0.9374 27 1 -0.3633 -1.0224 0.1036 28 1 3.1301 1.4424 0.0005 29 1 1.6768 1.9564 -0.8899 30 1 1.6767 1.9562 0.8900 31 1 0.6843 1.1360 3.4905 32 1 3.1300 -0.7217 -1.2491 33 1 1.6767 -1.7489 -1.2494 34 1 0.9939 0.7579 -2.3565 35 1 0.2850 0.2190 -4.9001 36 1 1.7378 1.2473 -4.8999 37 1 3.7539 0.5309 -5.7182 38 1 3.9127 -1.2471 -5.8705 39 1 3.6668 -1.1728 -8.2689 40 1 4.6236 0.3111 -7.9569 41 1 2.3004 0.5218 -9.3062 42 1 2.6688 1.7198 -8.0275 43 1 0.1425 -0.4377 -9.0161 44 1 1.1168 -1.6425 -8.4127 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000405467008.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:39 Heat of formation + Delta-G solvation = -67.107434 kcal Electronic energy + Delta-G solvation = -21113.025175 eV Core-core repulsion = 18063.818682 eV Total energy + Delta-G solvation = -3049.206493 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.76781 -38.31905 -36.27753 -33.21081 -32.62027 -31.59433 -30.65869 -27.12373 -26.14748 -25.71701 -25.30034 -23.99772 -20.90491 -20.07491 -19.59651 -18.73843 -16.89601 -16.09211 -15.85724 -15.46212 -15.08702 -14.93543 -14.71350 -14.44837 -13.77902 -13.43458 -13.15734 -12.90287 -12.70257 -12.17505 -12.14920 -11.83871 -11.41699 -11.35374 -11.17542 -11.09692 -10.85778 -10.79680 -10.70972 -10.65297 -10.58447 -10.36564 -10.19199 -9.61035 -9.47160 -9.16755 -8.85086 -8.78354 -8.40329 -8.24785 -6.01824 -4.09908 3.16262 3.28594 3.36193 3.40908 3.79978 4.32007 4.40915 4.47717 4.55435 4.82502 5.09030 5.22203 5.25238 5.27451 5.38870 5.51085 5.52246 5.60929 5.69073 5.73917 5.94749 5.97839 6.03780 6.27372 6.29748 6.36292 6.46166 6.53581 6.81282 6.84357 6.95515 6.99682 7.03258 7.10025 7.25101 7.37897 7.56808 7.71199 8.00557 8.10721 8.19880 8.40158 8.79702 8.90843 9.55184 11.00164 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.043052 B = 0.003489 C = 0.003409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.225655 B = 8022.624264 C = 8211.995267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.055 3.945 3 C -0.129 4.129 4 C -0.508 4.508 5 H 0.057 0.943 6 C 0.067 3.933 7 N -0.885 5.885 8 Si 0.891 3.109 9 H -0.282 1.282 10 H -0.274 1.274 11 H -0.286 1.286 12 C 0.133 3.867 13 N -0.720 5.720 14 C 0.503 3.497 15 O -0.552 6.552 16 C -0.134 4.134 17 C -0.067 4.067 18 H 0.088 0.912 19 C -0.114 4.114 20 C -0.127 4.127 21 C -0.159 4.159 22 C 0.088 3.912 23 H 0.082 0.918 24 N -0.841 5.841 25 H 0.085 0.915 26 H 0.004 0.996 27 H 0.028 0.972 28 H 0.027 0.973 29 H 0.008 0.992 30 H 0.080 0.920 31 H 0.259 0.741 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.397 0.603 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.062 0.938 38 H 0.076 0.924 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.060 0.940 42 H 0.068 0.932 43 H 0.337 0.663 44 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.383 2.585 -18.905 19.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.054 3.946 3 C -0.187 4.187 4 C -0.546 4.546 5 H 0.075 0.925 6 C -0.134 4.134 7 N -0.523 5.523 8 Si 0.719 3.281 9 H -0.208 1.208 10 H -0.198 1.198 11 H -0.212 1.212 12 C 0.010 3.990 13 N -0.370 5.370 14 C 0.289 3.711 15 O -0.430 6.430 16 C -0.174 4.174 17 C -0.087 4.087 18 H 0.106 0.894 19 C -0.152 4.152 20 C -0.164 4.164 21 C -0.199 4.199 22 C -0.024 4.024 23 H 0.101 0.899 24 N -0.370 5.370 25 H 0.103 0.897 26 H 0.023 0.977 27 H 0.047 0.953 28 H 0.046 0.954 29 H 0.027 0.973 30 H 0.099 0.901 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.232 0.768 35 H 0.109 0.891 36 H 0.106 0.894 37 H 0.081 0.919 38 H 0.095 0.905 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.078 0.922 42 H 0.087 0.913 43 H 0.150 0.850 44 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 0.321 1.934 -18.156 18.262 hybrid contribution 0.818 0.278 0.211 0.889 sum 1.139 2.211 -17.945 18.117 Atomic orbital electron populations 1.21857 0.97638 1.00164 0.98967 1.18357 0.92884 0.92619 0.90698 1.21786 0.98561 0.98415 0.99889 1.20985 1.33028 1.10665 0.89941 0.92460 1.24877 0.94667 0.95093 0.98785 1.69849 1.33176 1.26108 1.23157 0.86593 0.79946 0.78822 0.82736 1.20822 1.19841 1.21205 1.21658 0.97994 0.95764 0.83593 1.46347 1.52704 1.31823 1.06159 1.20570 0.80728 0.84906 0.84890 1.90644 1.38625 1.26753 1.87018 1.21786 1.02380 1.00256 0.93002 1.21522 0.94821 1.00802 0.91518 0.89359 1.22427 0.95335 1.02596 0.94840 1.22520 0.97742 0.99382 0.96772 1.23221 0.97095 1.00392 0.99189 1.22178 0.92924 0.94015 0.93268 0.89948 1.58946 1.39863 1.10817 1.27363 0.89668 0.97679 0.95299 0.95419 0.97314 0.90133 0.93069 0.92890 0.92883 0.76825 0.89069 0.89418 0.91907 0.90497 0.91900 0.91803 0.92161 0.91288 0.85019 0.84712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16 2 C 0.06 1.29 0.50 -155.66 -0.08 1.21 16 3 C -0.13 -2.89 8.06 37.15 0.30 -2.59 16 4 C -0.51 -13.42 8.00 -34.44 -0.28 -13.70 16 5 H 0.06 1.53 7.76 -52.48 -0.41 1.13 16 6 C 0.07 1.78 5.12 -17.82 -0.09 1.69 16 7 N -0.88 -23.70 9.48 55.43 0.53 -23.17 16 8 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 12 C 0.13 2.85 4.50 -4.04 -0.02 2.83 16 13 N -0.72 -12.79 4.91 -60.29 -0.30 -13.09 16 14 C 0.50 8.54 7.61 -10.98 -0.08 8.46 16 15 O -0.55 -11.22 14.78 5.56 0.08 -11.14 16 16 C -0.13 -1.65 4.83 -27.88 -0.13 -1.79 16 17 C -0.07 -0.79 2.29 -89.50 -0.20 -1.00 16 18 H 0.09 1.23 7.71 -51.93 -0.40 0.83 16 19 C -0.11 -1.36 5.40 -25.03 -0.14 -1.49 16 20 C -0.13 -1.17 6.91 -24.69 -0.17 -1.34 16 21 C -0.16 -1.30 6.52 -25.07 -0.16 -1.47 16 22 C 0.09 0.82 3.69 -66.59 -0.25 0.57 16 23 H 0.08 0.75 7.67 -51.93 -0.40 0.35 16 24 N -0.84 -7.32 9.11 -3.72 -0.03 -7.36 16 25 H 0.08 2.13 6.16 -51.93 -0.32 1.81 16 26 H 0.00 0.09 6.72 -51.92 -0.35 -0.26 16 27 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.01 0.16 6.86 -51.93 -0.36 -0.20 16 30 H 0.08 2.00 6.21 -51.93 -0.32 1.67 16 31 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 32 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.40 6.37 6.16 -40.82 -0.25 6.11 16 35 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 36 H 0.09 0.93 8.02 -51.93 -0.42 0.51 16 37 H 0.06 0.76 7.77 -51.93 -0.40 0.36 16 38 H 0.08 1.08 7.63 -51.93 -0.40 0.68 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.43 8.03 -51.93 -0.42 0.01 16 42 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.34 2.30 9.05 -39.29 -0.36 1.94 16 44 H 0.34 2.81 8.97 -39.29 -0.35 2.45 16 LS Contribution 338.82 15.07 5.11 5.11 Total: -1.00 -28.48 338.82 -8.30 -36.79 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: -7.66 Total: 8.31 kcal Atomic # 6 Polarization: -10.25 SS G_CDS: -1.00 Total: -11.25 kcal Atomic # 7 Polarization: -43.82 SS G_CDS: 0.20 Total: -43.62 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: 0.08 Total: -11.14 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -28.48 -8.30 -36.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405467008.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.322 kcal (2) G-P(sol) polarization free energy of solvation -28.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds