Wall clock time and date at job start Mon Mar 30 2020 05:05:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52994 * 109.47220 * 2 1 4 4 C 1.50692 * 109.46978 * 120.00617 * 2 1 3 5 5 H 1.08003 * 120.00272 * 117.90710 * 4 2 1 6 6 C 1.37881 * 119.99987 * 297.90778 * 4 2 1 7 7 N 1.31517 * 119.99673 * 7.59731 * 6 4 2 8 8 Si 1.86801 * 120.00233 * 187.60476 * 6 4 2 9 9 H 1.48505 * 109.46588 * 265.12016 * 8 6 4 10 10 H 1.48498 * 109.47295 * 25.11440 * 8 6 4 11 11 H 1.48495 * 109.47407 * 145.11754 * 8 6 4 12 12 C 1.53002 * 109.46656 * 240.00144 * 2 1 3 13 13 N 1.46497 * 109.47349 * 60.00640 * 12 2 1 14 14 C 1.34783 * 120.00143 * 179.97438 * 13 12 2 15 15 O 1.21281 * 119.99770 * 0.02562 * 14 13 12 16 16 C 1.50700 * 119.99914 * 179.97438 * 14 13 12 17 17 C 1.52998 * 109.46863 * 180.02562 * 16 14 13 18 18 H 1.08999 * 110.02105 * 54.30457 * 17 16 14 19 19 C 1.54266 * 110.03290 * 292.90996 * 17 16 14 20 20 C 1.54968 * 104.16280 * 217.13725 * 19 17 16 21 21 C 1.54895 * 102.77523 * 37.88869 * 20 19 17 22 22 C 1.53877 * 110.02892 * 175.69502 * 17 16 14 23 23 H 1.08993 * 110.03734 * 359.95340 * 22 17 16 24 24 N 1.46901 * 110.02903 * 238.56730 * 22 17 16 25 25 H 1.08995 * 109.46942 * 305.79101 * 1 2 3 26 26 H 1.09008 * 109.46472 * 65.78922 * 1 2 3 27 27 H 1.08996 * 109.46993 * 185.78845 * 1 2 3 28 28 H 1.09002 * 109.47143 * 179.97438 * 3 2 1 29 29 H 1.08995 * 109.47815 * 300.00147 * 3 2 1 30 30 H 1.09000 * 109.46674 * 60.00217 * 3 2 1 31 31 H 0.96997 * 119.99660 * 180.02562 * 7 6 4 32 32 H 1.09004 * 109.46953 * 180.02562 * 12 2 1 33 33 H 1.08997 * 109.47728 * 299.99735 * 12 2 1 34 34 H 0.96997 * 120.00218 * 359.97438 * 13 12 2 35 35 H 1.08997 * 109.47557 * 300.00885 * 16 14 13 36 36 H 1.09001 * 109.46486 * 60.00676 * 16 14 13 37 37 H 1.08997 * 110.48946 * 335.78398 * 19 17 16 38 38 H 1.09003 * 110.48656 * 98.42758 * 19 17 16 39 39 H 1.09000 * 110.71996 * 279.57904 * 20 19 17 40 40 H 1.08994 * 110.92584 * 156.29420 * 20 19 17 41 41 H 1.08997 * 110.48490 * 203.40783 * 21 20 19 42 42 H 1.09004 * 110.59667 * 80.81675 * 21 20 19 43 43 H 1.00900 * 110.99657 * 180.02562 * 24 22 17 44 44 H 1.00899 * 111.00169 * 303.95302 * 24 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6251 -1.6079 1.1316 6 6 1.7352 -0.2149 2.4822 7 7 0.8930 0.7871 2.6098 8 14 2.5289 -0.9666 3.9970 9 1 1.6222 -1.9917 4.5737 10 1 3.8164 -1.6019 3.6175 11 1 2.7789 0.0959 5.0037 12 6 2.0400 -0.7213 -1.2493 13 7 1.5517 -0.0306 -2.4454 14 6 1.8777 -0.4907 -3.6696 15 8 2.5748 -1.4769 -3.7809 16 6 1.3750 0.2195 -4.9000 17 6 1.8850 -0.5017 -6.1493 18 1 1.6122 -1.5563 -6.1088 19 6 3.4170 -0.3558 -6.2552 20 6 3.6790 -0.2014 -7.7748 21 6 2.4845 0.6671 -8.2418 22 6 1.2921 0.1480 -7.4119 23 1 0.6404 0.9765 -7.1347 24 7 0.5378 -0.8486 -8.1837 25 1 -0.3633 0.6010 0.8336 26 1 -0.3632 0.4215 -0.9374 27 1 -0.3633 -1.0224 0.1036 28 1 3.1301 1.4424 0.0005 29 1 1.6768 1.9564 -0.8899 30 1 1.6767 1.9562 0.8900 31 1 0.6843 1.1360 3.4905 32 1 3.1300 -0.7217 -1.2491 33 1 1.6767 -1.7489 -1.2494 34 1 0.9939 0.7579 -2.3565 35 1 0.2850 0.2190 -4.9001 36 1 1.7378 1.2473 -4.8999 37 1 3.7539 0.5309 -5.7182 38 1 3.9127 -1.2471 -5.8705 39 1 3.6668 -1.1728 -8.2689 40 1 4.6236 0.3111 -7.9569 41 1 2.3004 0.5218 -9.3062 42 1 2.6688 1.7198 -8.0275 43 1 0.1425 -0.4377 -9.0161 44 1 1.1168 -1.6425 -8.4127 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000405467008.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:38 Heat of formation + Delta-G solvation = -85.639763 kcal Electronic energy + Delta-G solvation = -21113.828797 eV Core-core repulsion = 18063.818682 eV Total energy + Delta-G solvation = -3050.010115 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.00322 -39.40461 -37.99869 -34.94201 -33.43292 -32.90971 -32.11426 -28.05297 -27.56619 -27.50586 -27.09914 -25.36609 -21.83311 -21.30760 -20.63030 -20.41832 -18.32643 -17.64518 -17.02209 -16.71267 -16.50453 -16.20738 -15.96686 -15.63016 -14.87861 -14.81828 -14.58701 -14.41331 -13.97236 -13.92927 -13.30537 -13.15420 -13.01521 -12.68378 -12.62065 -12.59399 -12.24578 -12.18833 -12.14255 -11.90405 -11.64040 -11.52993 -11.50934 -11.47729 -11.24286 -10.77913 -10.62945 -10.37691 -9.87063 -9.49908 -8.03863 -6.17723 1.40969 1.44441 1.53480 1.80141 2.37125 2.52991 3.19846 3.60303 3.63258 3.72070 4.02070 4.14904 4.30803 4.41672 4.46760 4.52399 4.60620 4.63256 4.70828 4.75291 4.79265 4.88022 4.97383 5.01515 5.05963 5.09997 5.12222 5.19324 5.20767 5.26718 5.38161 5.40760 5.54468 5.64771 5.66414 5.68195 6.13825 6.21637 6.34382 6.43030 6.68634 6.75975 6.86100 7.42551 7.49298 8.95668 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.043052 B = 0.003489 C = 0.003409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.225655 B = 8022.624264 C = 8211.995267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.050 3.950 3 C -0.118 4.118 4 C -0.532 4.532 5 H 0.042 0.958 6 C 0.030 3.970 7 N -0.897 5.897 8 Si 0.943 3.057 9 H -0.280 1.280 10 H -0.276 1.276 11 H -0.281 1.281 12 C 0.149 3.851 13 N -0.715 5.715 14 C 0.500 3.500 15 O -0.589 6.589 16 C -0.124 4.124 17 C -0.067 4.067 18 H 0.061 0.939 19 C -0.116 4.116 20 C -0.123 4.123 21 C -0.151 4.151 22 C 0.095 3.905 23 H 0.093 0.907 24 N -0.850 5.850 25 H 0.063 0.937 26 H 0.037 0.963 27 H 0.013 0.987 28 H 0.019 0.981 29 H 0.041 0.959 30 H 0.057 0.943 31 H 0.260 0.740 32 H 0.035 0.965 33 H 0.032 0.968 34 H 0.408 0.592 35 H 0.111 0.889 36 H 0.115 0.885 37 H 0.059 0.941 38 H 0.044 0.956 39 H 0.064 0.936 40 H 0.070 0.930 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.350 0.650 44 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.231 4.000 -20.639 21.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.050 3.950 3 C -0.176 4.176 4 C -0.571 4.571 5 H 0.060 0.940 6 C -0.170 4.170 7 N -0.536 5.536 8 Si 0.770 3.230 9 H -0.206 1.206 10 H -0.201 1.201 11 H -0.206 1.206 12 C 0.025 3.975 13 N -0.366 5.366 14 C 0.288 3.712 15 O -0.470 6.470 16 C -0.164 4.164 17 C -0.086 4.086 18 H 0.080 0.920 19 C -0.154 4.154 20 C -0.160 4.160 21 C -0.190 4.190 22 C -0.017 4.017 23 H 0.111 0.889 24 N -0.380 5.380 25 H 0.082 0.918 26 H 0.056 0.944 27 H 0.033 0.967 28 H 0.038 0.962 29 H 0.060 0.940 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.053 0.947 33 H 0.051 0.949 34 H 0.246 0.754 35 H 0.129 0.871 36 H 0.133 0.867 37 H 0.078 0.922 38 H 0.063 0.937 39 H 0.082 0.918 40 H 0.089 0.911 41 H 0.094 0.906 42 H 0.096 0.904 43 H 0.164 0.836 44 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -0.313 3.370 -19.911 20.197 hybrid contribution 1.020 -0.212 0.739 1.277 sum 0.707 3.158 -19.172 19.443 Atomic orbital electron populations 1.21688 0.97050 0.99032 0.99768 1.18362 0.93284 0.93052 0.90342 1.21623 0.97944 0.97704 1.00320 1.21275 1.33357 1.10731 0.91741 0.93963 1.25444 0.95092 0.95626 1.00855 1.69943 1.33463 1.26564 1.23598 0.85782 0.78968 0.78214 0.80068 1.20618 1.20108 1.20598 1.21182 0.96767 0.94908 0.84641 1.46196 1.52978 1.32037 1.05433 1.21451 0.79667 0.84409 0.85666 1.90638 1.40254 1.28614 1.87525 1.21831 1.03396 1.00879 0.90274 1.21493 0.94822 0.99510 0.92803 0.92034 1.22378 0.95375 1.00879 0.96768 1.22494 0.98850 1.00010 0.94653 1.23172 0.95602 1.00399 0.99846 1.22074 0.93464 0.93997 0.92160 0.88907 1.58910 1.39979 1.10944 1.28176 0.91785 0.94418 0.96735 0.96223 0.94038 0.92405 0.93017 0.94660 0.94915 0.75449 0.87128 0.86672 0.92200 0.93680 0.91765 0.91085 0.90596 0.90436 0.83589 0.84580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.29 8.08 71.98 0.58 -4.71 16 2 C 0.05 2.35 0.50 -52.93 -0.03 2.32 16 3 C -0.12 -5.21 8.06 71.98 0.58 -4.63 16 4 C -0.53 -28.63 8.00 25.60 0.20 -28.42 16 5 H 0.04 2.33 7.76 -2.91 -0.02 2.31 16 6 C 0.03 1.59 5.12 84.66 0.43 2.02 16 7 N -0.90 -48.13 9.48 21.45 0.20 -47.93 16 8 Si 0.94 42.98 29.54 68.60 2.03 45.00 16 9 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 10 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 11 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 12 C 0.15 6.47 4.50 86.38 0.39 6.86 16 13 N -0.71 -24.54 4.91 -463.05 -2.27 -26.81 16 14 C 0.50 16.54 7.61 87.66 0.67 17.20 16 15 O -0.59 -24.40 14.78 -3.03 -0.04 -24.44 16 16 C -0.12 -2.76 4.83 29.85 0.14 -2.61 16 17 C -0.07 -1.48 2.29 -10.07 -0.02 -1.50 16 18 H 0.06 1.71 7.71 -2.39 -0.02 1.69 16 19 C -0.12 -2.69 5.40 31.70 0.17 -2.52 16 20 C -0.12 -2.05 6.91 31.91 0.22 -1.83 16 21 C -0.15 -1.98 6.52 31.67 0.21 -1.78 16 22 C 0.09 1.49 3.69 45.64 0.17 1.66 16 23 H 0.09 1.31 7.67 -2.39 -0.02 1.29 16 24 N -0.85 -12.77 9.11 -165.67 -1.51 -14.28 16 25 H 0.06 3.17 6.16 -2.39 -0.01 3.16 16 26 H 0.04 1.40 6.72 -2.38 -0.02 1.38 16 27 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.04 1.51 6.86 -2.39 -0.02 1.49 16 30 H 0.06 2.83 6.21 -2.39 -0.01 2.82 16 31 H 0.26 13.42 8.31 -92.71 -0.77 12.65 16 32 H 0.03 1.63 8.14 -2.38 -0.02 1.61 16 33 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.41 12.02 6.16 -92.71 -0.57 11.45 16 35 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.12 2.00 8.02 -2.39 -0.02 1.98 16 37 H 0.06 1.39 7.77 -2.39 -0.02 1.37 16 38 H 0.04 1.31 7.63 -2.39 -0.02 1.29 16 39 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.08 0.80 8.03 -2.39 -0.02 0.79 16 42 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 43 H 0.35 3.76 9.05 -89.69 -0.81 2.95 16 44 H 0.34 5.05 8.97 -89.69 -0.80 4.25 16 Total: -1.00 -62.34 338.82 0.93 -61.41 By element: Atomic # 1 Polarization: 26.18 SS G_CDS: -1.19 Total: 24.99 kcal Atomic # 6 Polarization: -21.66 SS G_CDS: 3.72 Total: -17.95 kcal Atomic # 7 Polarization: -85.44 SS G_CDS: -3.58 Total: -89.02 kcal Atomic # 8 Polarization: -24.40 SS G_CDS: -0.04 Total: -24.44 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.00 kcal Total: -62.34 0.93 -61.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405467008.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.228 kcal (2) G-P(sol) polarization free energy of solvation -62.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds