Wall clock time and date at job start Mon Mar 30 2020 05:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.46846 * 2 1 4 4 H 1.09000 * 109.46845 * 304.90047 * 3 2 1 5 5 C 1.50704 * 109.47163 * 184.90581 * 3 2 1 6 6 H 1.07998 * 119.99567 * 245.45403 * 5 3 2 7 7 C 1.37873 * 120.00333 * 65.44590 * 5 3 2 8 8 N 1.31517 * 119.99919 * 9.47925 * 7 5 3 9 9 Si 1.86802 * 120.00033 * 189.47027 * 7 5 3 10 10 H 1.48500 * 109.46943 * 85.00155 * 9 7 5 11 11 H 1.48507 * 109.46881 * 204.99734 * 9 7 5 12 12 H 1.48495 * 109.47204 * 324.99923 * 9 7 5 13 13 N 1.46494 * 109.47207 * 64.90056 * 3 2 1 14 14 C 1.34772 * 120.00329 * 274.99883 * 13 3 2 15 15 O 1.21288 * 119.99966 * 0.02562 * 14 13 3 16 16 C 1.50700 * 120.00234 * 179.97438 * 14 13 3 17 17 H 1.09004 * 109.57527 * 299.84669 * 16 14 13 18 18 C 1.53118 * 109.52289 * 60.00204 * 16 14 13 19 19 C 1.53037 * 109.31298 * 177.57875 * 18 16 14 20 20 N 1.46851 * 109.52142 * 300.80120 * 19 18 16 21 21 C 1.46904 * 110.99621 * 185.83784 * 20 19 18 22 22 C 1.46847 * 111.19579 * 61.74417 * 20 19 18 23 23 H 1.08998 * 109.46485 * 58.27448 * 22 20 19 24 24 C 1.53008 * 109.45992 * 178.24167 * 22 20 19 25 25 C 1.53040 * 109.52099 * 298.25272 * 22 20 19 26 26 H 1.09001 * 109.47301 * 299.99639 * 1 2 3 27 27 H 1.09001 * 109.47882 * 60.00435 * 1 2 3 28 28 H 1.09006 * 109.46904 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47301 * 240.00361 * 2 1 3 30 30 H 1.08994 * 109.47310 * 119.99893 * 2 1 3 31 31 H 0.97000 * 120.00379 * 179.97438 * 8 7 5 32 32 H 0.97002 * 119.99569 * 95.00219 * 13 3 2 33 33 H 1.09001 * 109.50031 * 57.61686 * 18 16 14 34 34 H 1.08999 * 109.50510 * 297.54064 * 18 16 14 35 35 H 1.08998 * 109.46273 * 60.81560 * 19 18 16 36 36 H 1.09002 * 109.46457 * 180.78829 * 19 18 16 37 37 H 1.08993 * 109.47215 * 63.95699 * 21 20 19 38 38 H 1.09005 * 109.46444 * 183.95459 * 21 20 19 39 39 H 1.09001 * 109.47338 * 303.95246 * 21 20 19 40 40 H 1.08993 * 109.47293 * 59.99635 * 24 22 20 41 41 H 1.08995 * 109.46702 * 179.97438 * 24 22 20 42 42 H 1.08995 * 109.46639 * 299.99449 * 24 22 20 43 43 H 1.09002 * 109.49628 * 179.12457 * 25 22 20 44 44 H 1.08998 * 109.50340 * 299.23955 * 25 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6066 1.9810 -0.8428 5 6 3.5420 1.4444 -0.1215 6 1 4.1492 1.8092 0.6937 7 6 4.1411 0.9802 -1.2733 8 7 3.4096 0.7116 -2.3327 9 14 5.9919 0.7330 -1.3291 10 1 6.3290 -0.6064 -0.7837 11 1 6.4617 0.8277 -2.7347 12 1 6.6561 1.7811 -0.5134 13 7 1.6503 2.0982 1.2507 14 6 0.4328 2.6652 1.3636 15 8 -0.3405 2.6321 0.4298 16 6 0.0318 3.3392 2.6505 17 1 0.0583 2.6157 3.4653 18 6 1.0018 4.4849 2.9519 19 6 0.5553 5.2040 4.2269 20 7 -0.8050 5.7265 4.0448 21 6 -1.2144 6.5413 5.1965 22 6 -1.7628 4.6403 3.8016 23 1 -1.7408 3.9424 4.6385 24 6 -3.1704 5.2237 3.6616 25 6 -1.3855 3.9045 2.5138 26 1 -0.3634 0.5138 0.8900 27 1 -0.3635 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 3.8310 0.3854 -3.1432 32 1 2.2686 2.1244 1.9977 33 1 1.0041 5.1883 2.1192 34 1 2.0057 4.0844 3.0925 35 1 0.5665 4.5034 5.0618 36 1 1.2362 6.0290 4.4360 37 1 -0.5724 7.4193 5.2670 38 1 -2.2496 6.8576 5.0681 39 1 -1.1250 5.9517 6.1090 40 1 -3.1927 5.9221 2.8251 41 1 -3.8814 4.4177 3.4806 42 1 -3.4396 5.7470 4.5791 43 1 -2.0876 3.0886 2.3419 44 1 -1.4208 4.5988 1.6743 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408227873.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:50 Heat of formation + Delta-G solvation = -53.428848 kcal Electronic energy + Delta-G solvation = -21664.823119 eV Core-core repulsion = 18616.209775 eV Total energy + Delta-G solvation = -3048.613345 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.89821 -38.29396 -35.05709 -33.60429 -32.47434 -32.14810 -30.83667 -27.71787 -27.04427 -26.24312 -23.53237 -22.71429 -22.00941 -20.18173 -19.59605 -19.15102 -17.05827 -15.85913 -15.70893 -15.44074 -15.24363 -14.75297 -14.45818 -14.09629 -14.03267 -13.54200 -12.85322 -12.78818 -12.62727 -12.25049 -12.05430 -11.96195 -11.83783 -11.64991 -11.40650 -11.32547 -11.09279 -10.99434 -10.78055 -10.74014 -10.48989 -10.32417 -10.30270 -10.13332 -9.66410 -9.07545 -8.78154 -8.45167 -8.38291 -7.76819 -6.12299 -4.17497 3.26029 3.32880 3.34053 3.49242 3.81084 4.13701 4.40169 4.75678 4.85306 4.92248 5.06297 5.20681 5.23389 5.31338 5.33676 5.39530 5.50778 5.57243 5.63736 5.72732 5.77483 5.82806 5.88065 6.05206 6.09261 6.20446 6.33922 6.36642 6.41118 6.55147 6.62419 7.00838 7.01716 7.05734 7.19745 7.35767 7.48027 7.64939 7.74862 7.88623 8.11276 8.74945 8.83389 9.22598 9.48955 10.95899 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.029059 B = 0.004519 C = 0.004065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.312756 B = 6194.171989 C = 6885.841918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.119 4.119 3 C 0.268 3.732 4 H 0.055 0.945 5 C -0.536 4.536 6 H 0.060 0.940 7 C 0.069 3.931 8 N -0.880 5.880 9 Si 0.896 3.104 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.709 5.709 14 C 0.506 3.494 15 O -0.548 6.548 16 C -0.111 4.111 17 H 0.084 0.916 18 C -0.107 4.107 19 C 0.059 3.941 20 N -0.539 5.539 21 C 0.020 3.980 22 C 0.081 3.919 23 H 0.038 0.962 24 C -0.148 4.148 25 C -0.088 4.088 26 H 0.041 0.959 27 H 0.051 0.949 28 H 0.022 0.978 29 H 0.078 0.922 30 H 0.033 0.967 31 H 0.264 0.736 32 H 0.386 0.614 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.032 0.968 36 H 0.076 0.924 37 H 0.066 0.934 38 H 0.073 0.927 39 H 0.021 0.979 40 H 0.065 0.935 41 H 0.060 0.940 42 H 0.055 0.945 43 H 0.071 0.929 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.649 7.379 14.559 18.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.159 4.159 3 C 0.166 3.834 4 H 0.073 0.927 5 C -0.575 4.575 6 H 0.078 0.922 7 C -0.135 4.135 8 N -0.516 5.516 9 Si 0.724 3.276 10 H -0.205 1.205 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.356 5.356 14 C 0.291 3.709 15 O -0.427 6.427 16 C -0.132 4.132 17 H 0.102 0.898 18 C -0.145 4.145 19 C -0.068 4.068 20 N -0.264 5.264 21 C -0.128 4.128 22 C -0.028 4.028 23 H 0.055 0.945 24 C -0.205 4.205 25 C -0.126 4.126 26 H 0.060 0.940 27 H 0.070 0.930 28 H 0.041 0.959 29 H 0.097 0.903 30 H 0.052 0.948 31 H 0.074 0.926 32 H 0.218 0.782 33 H 0.096 0.904 34 H 0.092 0.908 35 H 0.050 0.950 36 H 0.094 0.906 37 H 0.084 0.916 38 H 0.091 0.909 39 H 0.040 0.960 40 H 0.084 0.916 41 H 0.079 0.921 42 H 0.074 0.926 43 H 0.090 0.910 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -8.171 7.571 13.242 17.304 hybrid contribution 1.414 -0.780 1.051 1.926 sum -6.758 6.791 14.293 17.207 Atomic orbital electron populations 1.21838 0.98068 0.98044 1.01529 1.21846 0.92953 1.00014 1.01041 1.18765 0.94236 0.88831 0.81555 0.92680 1.21184 0.90674 1.43887 1.01730 0.92176 1.24881 0.98358 0.95203 0.95010 1.69986 1.35699 1.43837 1.02125 0.86554 0.85162 0.78680 0.77250 1.20474 1.21190 1.19927 1.46474 1.14770 1.56038 1.18329 1.20263 0.82665 0.79055 0.88903 1.90660 1.51608 1.59954 1.40466 1.21420 0.97049 0.97660 0.97116 0.89821 1.21568 0.98008 0.96786 0.98170 1.22082 0.89845 0.98177 0.96744 1.61949 1.02120 1.22789 1.39548 1.22451 1.01941 0.97486 0.90968 1.21672 0.92142 0.91528 0.97416 0.94451 1.21928 0.95094 1.01373 1.02132 1.21417 0.94588 0.99656 0.96931 0.94040 0.92960 0.95894 0.90335 0.94836 0.92596 0.78186 0.90388 0.90777 0.94955 0.90568 0.91563 0.90870 0.95999 0.91568 0.92055 0.92621 0.90995 0.90200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 8.51 37.15 0.32 -2.74 16 2 C -0.12 -2.88 5.50 -26.73 -0.15 -3.02 16 3 C 0.27 6.73 2.11 -69.08 -0.15 6.58 16 4 H 0.06 1.63 7.52 -51.93 -0.39 1.24 16 5 C -0.54 -14.16 8.66 -34.44 -0.30 -14.45 16 6 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 7 C 0.07 1.87 5.16 -17.82 -0.09 1.78 16 8 N -0.88 -25.00 12.16 55.43 0.67 -24.32 16 9 Si 0.90 20.63 29.55 -169.99 -5.02 15.61 16 10 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 11 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 13 N -0.71 -14.53 4.92 -54.93 -0.27 -14.80 16 14 C 0.51 9.89 5.72 -10.99 -0.06 9.83 16 15 O -0.55 -12.71 13.12 5.55 0.07 -12.64 16 16 C -0.11 -1.62 2.60 -91.61 -0.24 -1.86 16 17 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 18 C -0.11 -1.40 5.25 -26.65 -0.14 -1.54 16 19 C 0.06 0.65 5.46 -3.83 -0.02 0.63 16 20 N -0.54 -6.13 4.75 -234.91 -1.12 -7.25 16 21 C 0.02 0.18 9.30 60.07 0.56 0.73 16 22 C 0.08 0.92 2.44 -67.72 -0.17 0.76 16 23 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 24 C -0.15 -1.45 8.79 37.16 0.33 -1.12 16 25 C -0.09 -1.23 3.96 -26.61 -0.11 -1.34 16 26 H 0.04 0.89 5.65 -51.93 -0.29 0.60 16 27 H 0.05 1.25 7.84 -51.93 -0.41 0.84 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.08 2.08 6.80 -51.93 -0.35 1.73 16 30 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 32 H 0.39 6.92 7.99 -40.82 -0.33 6.59 16 33 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 34 H 0.07 0.91 7.64 -51.93 -0.40 0.51 16 35 H 0.03 0.34 8.14 -51.93 -0.42 -0.09 16 36 H 0.08 0.76 8.12 -51.93 -0.42 0.34 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.60 5.75 -51.93 -0.30 0.30 16 39 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.05 0.46 6.15 -51.93 -0.32 0.15 16 43 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.08 1.28 8.05 -51.93 -0.42 0.86 16 LS Contribution 336.41 15.07 5.07 5.07 Total: -1.00 -29.76 336.41 -8.62 -38.38 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -7.82 Total: 5.72 kcal Atomic # 6 Polarization: -5.55 SS G_CDS: -0.21 Total: -5.76 kcal Atomic # 7 Polarization: -45.66 SS G_CDS: -0.71 Total: -46.37 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: 0.07 Total: -12.64 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.76 -8.62 -38.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408227873.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.052 kcal (2) G-P(sol) polarization free energy of solvation -29.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds