Wall clock time and date at job start Mon Mar 30 2020 05:50:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 5 5 C 1.50699 * 109.47053 * 175.00035 * 3 2 1 6 6 H 1.08004 * 120.00307 * 119.99902 * 5 3 2 7 7 C 1.37884 * 119.99822 * 299.99692 * 5 3 2 8 8 N 1.31514 * 120.00109 * 0.02562 * 7 5 3 9 9 Si 1.86806 * 119.99727 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47407 * 59.99635 * 9 7 5 11 11 H 1.48500 * 109.46999 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.46718 * 299.99560 * 9 7 5 13 13 N 1.46499 * 109.46679 * 294.99474 * 3 2 1 14 14 C 1.34785 * 119.99572 * 85.00499 * 13 3 2 15 15 O 1.21274 * 119.99855 * 359.97438 * 14 13 3 16 16 C 1.50703 * 119.99767 * 179.97438 * 14 13 3 17 17 H 1.08996 * 109.52312 * 299.99812 * 16 14 13 18 18 C 1.53116 * 109.52239 * 60.12435 * 16 14 13 19 19 C 1.53037 * 109.28041 * 177.55749 * 18 16 14 20 20 N 1.46847 * 109.52277 * 300.82337 * 19 18 16 21 21 C 1.46899 * 110.99880 * 185.83599 * 20 19 18 22 22 C 1.46848 * 111.19645 * 61.73770 * 20 19 18 23 23 H 1.08998 * 109.46387 * 58.26729 * 22 20 19 24 24 C 1.53001 * 109.45851 * 178.24113 * 22 20 19 25 25 C 1.53039 * 109.57698 * 298.28810 * 22 20 19 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 29 29 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 30 30 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 31 31 H 0.96997 * 119.99669 * 180.02562 * 8 7 5 32 32 H 0.96999 * 120.00274 * 264.99733 * 13 3 2 33 33 H 1.08999 * 109.50825 * 297.50164 * 18 16 14 34 34 H 1.09005 * 109.50670 * 57.57491 * 18 16 14 35 35 H 1.09000 * 109.46145 * 60.83772 * 19 18 16 36 36 H 1.09001 * 109.46224 * 180.80345 * 19 18 16 37 37 H 1.09000 * 109.47136 * 63.95830 * 21 20 19 38 38 H 1.08997 * 109.46838 * 183.95196 * 21 20 19 39 39 H 1.08999 * 109.47272 * 303.95497 * 21 20 19 40 40 H 1.09002 * 109.47372 * 60.00612 * 24 22 20 41 41 H 1.08999 * 109.46961 * 180.02562 * 24 22 20 42 42 H 1.08997 * 109.47729 * 300.00052 * 24 22 20 43 43 H 1.08999 * 109.45727 * 299.17783 * 25 22 20 44 44 H 1.09002 * 109.55712 * 179.05444 * 25 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1473 1.8889 -0.6523 7 6 4.1432 0.8784 1.2281 8 7 3.4062 0.3367 2.1730 9 14 6.0050 0.8813 1.3819 10 1 6.4995 2.2815 1.3821 11 1 6.3978 0.2168 2.6504 12 1 6.5974 0.1472 0.2350 13 7 1.6525 2.0974 -1.2519 14 6 0.4351 2.6644 -1.3670 15 8 -0.3395 2.6319 -0.4345 16 6 0.0367 3.3385 -2.6546 17 1 0.7275 4.1542 -2.8677 18 6 0.0773 2.3215 -3.7985 19 6 -0.3866 2.9964 -5.0914 20 7 -1.7519 3.5078 -4.9154 21 6 -2.2817 4.0394 -6.1782 22 6 -1.8067 4.5208 -3.8537 23 1 -1.1305 5.3400 -4.0981 24 6 -3.2346 5.0570 -3.7340 25 6 -1.3846 3.8928 -2.5234 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 1.8934 -0.5137 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 3.8293 -0.0610 2.9499 32 1 2.2720 2.1231 -1.9978 33 1 1.0963 1.9558 -3.9244 34 1 -0.5830 1.4859 -3.5663 35 1 0.2828 3.8228 -5.3301 36 1 -0.3725 2.2711 -5.9049 37 1 -2.3649 3.2321 -6.9058 38 1 -3.2657 4.4748 -6.0046 39 1 -1.6077 4.8057 -6.5611 40 1 -3.9111 4.2379 -3.4899 41 1 -3.2754 5.8093 -2.9463 42 1 -3.5347 5.5062 -4.6807 43 1 -2.0691 3.0830 -2.2708 44 1 -1.4093 4.6490 -1.7388 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408227876.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:52 Heat of formation + Delta-G solvation = -52.054093 kcal Electronic energy + Delta-G solvation = -21721.991822 eV Core-core repulsion = 18673.438091 eV Total energy + Delta-G solvation = -3048.553731 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.91173 -38.29079 -35.06379 -33.60609 -32.48953 -32.15318 -30.75167 -27.70451 -27.07310 -26.22580 -23.53559 -22.68613 -22.03807 -20.14842 -19.57006 -19.13337 -17.04437 -15.86420 -15.73242 -15.54037 -15.12999 -14.71369 -14.53675 -14.17083 -14.01407 -13.27813 -13.13741 -12.71002 -12.62637 -12.21947 -12.05942 -11.84957 -11.81694 -11.76273 -11.42381 -11.23569 -11.08325 -10.97261 -10.80108 -10.76329 -10.44849 -10.35450 -10.28663 -10.09587 -9.57985 -9.01756 -8.79904 -8.46322 -8.39100 -7.74509 -6.09816 -4.19225 3.26262 3.31734 3.32707 3.49397 3.80100 4.13182 4.39771 4.75198 4.84208 4.91767 5.04972 5.21176 5.22813 5.30777 5.33501 5.38774 5.50365 5.56698 5.63134 5.71787 5.77024 5.82357 5.87037 6.04647 6.08171 6.19490 6.31796 6.44051 6.50626 6.55138 6.71800 7.00521 7.04770 7.09419 7.24980 7.42314 7.53156 7.65428 7.78292 7.94634 8.22321 8.74323 8.81902 9.22565 9.48667 10.95366 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.032850 B = 0.004308 C = 0.004138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.151224 B = 6497.722916 C = 6764.795760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.126 4.126 3 C 0.270 3.730 4 H 0.048 0.952 5 C -0.534 4.534 6 H 0.059 0.941 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.709 5.709 14 C 0.506 3.494 15 O -0.549 6.549 16 C -0.111 4.111 17 H 0.085 0.915 18 C -0.106 4.106 19 C 0.059 3.941 20 N -0.539 5.539 21 C 0.020 3.980 22 C 0.080 3.920 23 H 0.038 0.962 24 C -0.148 4.148 25 C -0.088 4.088 26 H 0.021 0.979 27 H 0.040 0.960 28 H 0.048 0.952 29 H 0.098 0.902 30 H 0.030 0.970 31 H 0.265 0.735 32 H 0.386 0.614 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.033 0.967 36 H 0.076 0.924 37 H 0.065 0.935 38 H 0.073 0.927 39 H 0.022 0.978 40 H 0.065 0.935 41 H 0.061 0.939 42 H 0.055 0.945 43 H 0.079 0.921 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.159 6.511 -14.790 18.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.165 4.165 3 C 0.168 3.832 4 H 0.065 0.935 5 C -0.573 4.573 6 H 0.077 0.923 7 C -0.136 4.136 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.356 5.356 14 C 0.291 3.709 15 O -0.427 6.427 16 C -0.133 4.133 17 H 0.103 0.897 18 C -0.145 4.145 19 C -0.069 4.069 20 N -0.264 5.264 21 C -0.128 4.128 22 C -0.028 4.028 23 H 0.056 0.944 24 C -0.205 4.205 25 C -0.126 4.126 26 H 0.040 0.960 27 H 0.059 0.941 28 H 0.067 0.933 29 H 0.116 0.884 30 H 0.049 0.951 31 H 0.075 0.925 32 H 0.218 0.782 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.051 0.949 36 H 0.094 0.906 37 H 0.084 0.916 38 H 0.091 0.909 39 H 0.040 0.960 40 H 0.084 0.916 41 H 0.080 0.920 42 H 0.074 0.926 43 H 0.098 0.902 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.973 5.982 -13.754 17.477 hybrid contribution 1.941 0.636 -0.544 2.113 sum -7.032 6.618 -14.297 17.253 Atomic orbital electron populations 1.21834 0.98328 0.97937 1.01281 1.21920 0.92621 0.99853 1.02139 1.18750 0.94025 0.89181 0.81202 0.93451 1.21210 0.90841 1.39000 1.06224 0.92252 1.24884 0.98501 0.94846 0.95417 1.69887 1.35163 1.37576 1.09328 0.86536 0.85009 0.78266 0.77434 1.20236 1.21145 1.20193 1.46496 1.14745 1.56085 1.18323 1.20264 0.82616 0.79255 0.88763 1.90654 1.51476 1.59924 1.40685 1.21408 0.98712 0.98730 0.94451 0.89730 1.21561 1.01849 0.98182 0.92869 1.22079 0.88193 0.98525 0.98067 1.61942 1.21977 1.36281 1.06201 1.22450 1.00119 0.98946 0.91332 1.21671 0.96851 0.92142 0.92112 0.94421 1.21927 0.95973 1.01175 1.01445 1.21401 0.94982 1.01168 0.95034 0.95982 0.94138 0.93254 0.88427 0.95138 0.92547 0.78167 0.90851 0.90486 0.94907 0.90595 0.91576 0.90861 0.95979 0.91583 0.92037 0.92626 0.90247 0.90934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 8.51 37.16 0.32 -2.78 16 2 C -0.13 -3.10 5.45 -26.73 -0.15 -3.25 16 3 C 0.27 6.81 2.24 -69.08 -0.15 6.66 16 4 H 0.05 1.39 7.58 -51.93 -0.39 1.00 16 5 C -0.53 -14.12 8.73 -34.44 -0.30 -14.42 16 6 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -24.82 11.29 55.43 0.63 -24.19 16 9 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 16 10 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 11 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 13 N -0.71 -14.59 4.93 -54.93 -0.27 -14.86 16 14 C 0.51 9.91 5.73 -10.98 -0.06 9.85 16 15 O -0.55 -12.74 13.11 5.56 0.07 -12.66 16 16 C -0.11 -1.63 2.59 -91.65 -0.24 -1.87 16 17 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 18 C -0.11 -1.36 5.26 -26.65 -0.14 -1.50 16 19 C 0.06 0.64 5.46 -3.83 -0.02 0.62 16 20 N -0.54 -6.07 4.75 -234.93 -1.12 -7.18 16 21 C 0.02 0.17 9.30 60.06 0.56 0.73 16 22 C 0.08 0.92 2.44 -67.72 -0.17 0.76 16 23 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 24 C -0.15 -1.45 8.79 37.16 0.33 -1.12 16 25 C -0.09 -1.23 3.96 -26.65 -0.11 -1.34 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.04 0.89 5.64 -51.93 -0.29 0.60 16 28 H 0.05 1.20 7.85 -51.93 -0.41 0.79 16 29 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 30 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 32 H 0.39 6.96 8.02 -40.82 -0.33 6.64 16 33 H 0.07 0.87 7.65 -51.93 -0.40 0.48 16 34 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 35 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.08 0.74 8.12 -51.93 -0.42 0.32 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.59 5.75 -51.93 -0.30 0.29 16 39 H 0.02 0.19 8.14 -51.93 -0.42 -0.24 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.05 0.46 6.15 -51.93 -0.32 0.14 16 43 H 0.08 1.26 8.04 -51.93 -0.42 0.85 16 44 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 335.05 15.07 5.05 5.05 Total: -1.00 -29.56 335.05 -8.66 -38.22 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -7.78 Total: 5.98 kcal Atomic # 6 Polarization: -5.74 SS G_CDS: -0.23 Total: -5.97 kcal Atomic # 7 Polarization: -45.47 SS G_CDS: -0.76 Total: -46.23 kcal Atomic # 8 Polarization: -12.74 SS G_CDS: 0.07 Total: -12.66 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -29.56 -8.66 -38.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408227876.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.832 kcal (2) G-P(sol) polarization free energy of solvation -29.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds