Wall clock time and date at job start Mon Mar 30 2020 05:50:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 5 5 C 1.50699 * 109.47053 * 175.00035 * 3 2 1 6 6 H 1.08004 * 120.00307 * 119.99902 * 5 3 2 7 7 C 1.37884 * 119.99822 * 299.99692 * 5 3 2 8 8 N 1.31514 * 120.00109 * 0.02562 * 7 5 3 9 9 Si 1.86806 * 119.99727 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47407 * 59.99635 * 9 7 5 11 11 H 1.48500 * 109.46999 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.46718 * 299.99560 * 9 7 5 13 13 N 1.46499 * 109.46679 * 294.99474 * 3 2 1 14 14 C 1.34785 * 119.99572 * 85.00499 * 13 3 2 15 15 O 1.21274 * 119.99855 * 359.97438 * 14 13 3 16 16 C 1.50703 * 119.99767 * 179.97438 * 14 13 3 17 17 H 1.08996 * 109.52312 * 299.99812 * 16 14 13 18 18 C 1.53116 * 109.52239 * 60.12435 * 16 14 13 19 19 C 1.53037 * 109.28041 * 177.55749 * 18 16 14 20 20 N 1.46847 * 109.52277 * 300.82337 * 19 18 16 21 21 C 1.46899 * 110.99880 * 185.83599 * 20 19 18 22 22 C 1.46848 * 111.19645 * 61.73770 * 20 19 18 23 23 H 1.08998 * 109.46387 * 58.26729 * 22 20 19 24 24 C 1.53001 * 109.45851 * 178.24113 * 22 20 19 25 25 C 1.53039 * 109.57698 * 298.28810 * 22 20 19 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 29 29 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 30 30 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 31 31 H 0.96997 * 119.99669 * 180.02562 * 8 7 5 32 32 H 0.96999 * 120.00274 * 264.99733 * 13 3 2 33 33 H 1.08999 * 109.50825 * 297.50164 * 18 16 14 34 34 H 1.09005 * 109.50670 * 57.57491 * 18 16 14 35 35 H 1.09000 * 109.46145 * 60.83772 * 19 18 16 36 36 H 1.09001 * 109.46224 * 180.80345 * 19 18 16 37 37 H 1.09000 * 109.47136 * 63.95830 * 21 20 19 38 38 H 1.08997 * 109.46838 * 183.95196 * 21 20 19 39 39 H 1.08999 * 109.47272 * 303.95497 * 21 20 19 40 40 H 1.09002 * 109.47372 * 60.00612 * 24 22 20 41 41 H 1.08999 * 109.46961 * 180.02562 * 24 22 20 42 42 H 1.08997 * 109.47729 * 300.00052 * 24 22 20 43 43 H 1.08999 * 109.45727 * 299.17783 * 25 22 20 44 44 H 1.09002 * 109.55712 * 179.05444 * 25 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1473 1.8889 -0.6523 7 6 4.1432 0.8784 1.2281 8 7 3.4062 0.3367 2.1730 9 14 6.0050 0.8813 1.3819 10 1 6.4995 2.2815 1.3821 11 1 6.3978 0.2168 2.6504 12 1 6.5974 0.1472 0.2350 13 7 1.6525 2.0974 -1.2519 14 6 0.4351 2.6644 -1.3670 15 8 -0.3395 2.6319 -0.4345 16 6 0.0367 3.3385 -2.6546 17 1 0.7275 4.1542 -2.8677 18 6 0.0773 2.3215 -3.7985 19 6 -0.3866 2.9964 -5.0914 20 7 -1.7519 3.5078 -4.9154 21 6 -2.2817 4.0394 -6.1782 22 6 -1.8067 4.5208 -3.8537 23 1 -1.1305 5.3400 -4.0981 24 6 -3.2346 5.0570 -3.7340 25 6 -1.3846 3.8928 -2.5234 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 1.8934 -0.5137 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 3.8293 -0.0610 2.9499 32 1 2.2720 2.1231 -1.9978 33 1 1.0963 1.9558 -3.9244 34 1 -0.5830 1.4859 -3.5663 35 1 0.2828 3.8228 -5.3301 36 1 -0.3725 2.2711 -5.9049 37 1 -2.3649 3.2321 -6.9058 38 1 -3.2657 4.4748 -6.0046 39 1 -1.6077 4.8057 -6.5611 40 1 -3.9111 4.2379 -3.4899 41 1 -3.2754 5.8093 -2.9463 42 1 -3.5347 5.5062 -4.6807 43 1 -2.0691 3.0830 -2.2708 44 1 -1.4093 4.6490 -1.7388 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408227876.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:52 Heat of formation + Delta-G solvation = -71.721255 kcal Electronic energy + Delta-G solvation = -21722.844654 eV Core-core repulsion = 18673.438091 eV Total energy + Delta-G solvation = -3049.406563 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.23851 -39.57654 -36.93103 -34.82316 -34.15464 -33.29866 -32.58583 -29.15173 -28.40484 -27.28060 -25.15811 -24.09817 -23.13058 -21.75364 -20.96361 -20.58095 -18.80107 -17.40363 -17.24881 -16.67137 -16.50588 -16.12466 -15.93337 -15.44099 -15.02978 -14.76875 -14.56516 -14.48753 -13.66149 -13.57457 -13.32927 -13.16688 -13.03977 -12.99353 -12.87072 -12.73545 -12.64839 -12.52394 -12.20880 -12.10210 -12.00965 -11.79903 -11.60911 -11.49537 -11.30628 -11.03648 -10.56368 -10.37247 -9.57958 -9.19747 -8.14893 -6.32541 1.44940 1.46728 1.54524 1.91595 2.37201 2.69325 2.99023 3.14182 3.70506 3.81340 3.90282 4.08228 4.26039 4.34208 4.43923 4.49339 4.53381 4.57687 4.62025 4.64947 4.72867 4.78463 4.84587 4.90160 4.93181 4.99459 5.07039 5.10550 5.16345 5.23154 5.25986 5.32148 5.44430 5.45955 5.57438 5.66338 5.81199 5.95769 6.18763 6.20064 6.23261 6.75986 7.05063 7.35117 7.65075 8.90167 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.032850 B = 0.004308 C = 0.004138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.151224 B = 6497.722916 C = 6764.795760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.119 4.119 3 C 0.278 3.722 4 H -0.005 1.005 5 C -0.549 4.549 6 H 0.071 0.929 7 C 0.015 3.985 8 N -0.915 5.915 9 Si 0.970 3.030 10 H -0.272 1.272 11 H -0.287 1.287 12 H -0.264 1.264 13 N -0.705 5.705 14 C 0.502 3.498 15 O -0.589 6.589 16 C -0.100 4.100 17 H 0.105 0.895 18 C -0.102 4.102 19 C 0.063 3.937 20 N -0.555 5.555 21 C 0.020 3.980 22 C 0.086 3.914 23 H 0.047 0.953 24 C -0.145 4.145 25 C -0.084 4.084 26 H 0.044 0.956 27 H 0.044 0.956 28 H 0.023 0.977 29 H 0.070 0.930 30 H 0.041 0.959 31 H 0.264 0.736 32 H 0.402 0.598 33 H 0.084 0.916 34 H 0.057 0.943 35 H 0.045 0.955 36 H 0.091 0.909 37 H 0.074 0.926 38 H 0.080 0.920 39 H 0.030 0.970 40 H 0.055 0.945 41 H 0.064 0.936 42 H 0.075 0.925 43 H 0.054 0.946 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.380 7.197 -17.519 20.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.158 4.158 3 C 0.174 3.826 4 H 0.013 0.987 5 C -0.587 4.587 6 H 0.089 0.911 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.794 3.206 10 H -0.197 1.197 11 H -0.213 1.213 12 H -0.189 1.189 13 N -0.354 5.354 14 C 0.289 3.711 15 O -0.471 6.471 16 C -0.121 4.121 17 H 0.123 0.877 18 C -0.140 4.140 19 C -0.064 4.064 20 N -0.281 5.281 21 C -0.127 4.127 22 C -0.022 4.022 23 H 0.064 0.936 24 C -0.202 4.202 25 C -0.123 4.123 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.042 0.958 29 H 0.088 0.912 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.236 0.764 33 H 0.103 0.897 34 H 0.076 0.924 35 H 0.063 0.937 36 H 0.110 0.890 37 H 0.093 0.907 38 H 0.098 0.902 39 H 0.049 0.951 40 H 0.074 0.926 41 H 0.083 0.917 42 H 0.094 0.906 43 H 0.073 0.927 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.194 6.682 -16.534 19.625 hybrid contribution 1.639 0.432 0.332 1.727 sum -6.555 7.114 -16.201 18.869 Atomic orbital electron populations 1.21663 0.97093 0.98974 1.00176 1.21765 0.93607 0.99262 1.01181 1.18332 0.93538 0.89124 0.81564 0.98730 1.21563 0.91490 1.38948 1.06696 0.91083 1.25778 1.03293 0.94377 0.95025 1.70049 1.37132 1.38337 1.09851 0.85436 0.79143 0.78422 0.77553 1.19685 1.21258 1.18870 1.46269 1.15661 1.56098 1.17325 1.21171 0.81530 0.78365 0.90024 1.90638 1.52498 1.61264 1.42681 1.21392 0.99332 0.99315 0.92098 0.87674 1.21544 1.02266 0.97089 0.93091 1.22062 0.88272 0.99133 0.96970 1.61923 1.22349 1.36606 1.07243 1.22498 1.00489 0.99505 0.90235 1.21582 0.97883 0.92121 0.90618 0.93554 1.21907 0.94735 1.00925 1.02651 1.21348 0.94093 1.00109 0.96707 0.93741 0.93721 0.95812 0.91154 0.94072 0.92646 0.76374 0.89703 0.92395 0.93670 0.89030 0.90721 0.90175 0.95115 0.92603 0.91744 0.90641 0.92736 0.92104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.65 8.51 71.98 0.61 -5.04 16 2 C -0.12 -5.97 5.45 30.60 0.17 -5.80 16 3 C 0.28 14.40 2.24 44.25 0.10 14.50 16 4 H -0.01 -0.32 7.58 -2.39 -0.02 -0.34 16 5 C -0.55 -29.14 8.73 25.60 0.22 -28.92 16 6 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 7 C 0.02 0.83 5.29 84.66 0.45 1.28 16 8 N -0.92 -52.81 11.29 21.45 0.24 -52.57 16 9 Si 0.97 42.11 29.54 68.60 2.03 44.13 16 10 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 11 H -0.29 -12.41 7.11 99.48 0.71 -11.71 16 12 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 13 N -0.70 -29.11 4.93 -446.08 -2.20 -31.31 16 14 C 0.50 19.89 5.73 87.66 0.50 20.39 16 15 O -0.59 -28.51 13.11 -3.01 -0.04 -28.55 16 16 C -0.10 -2.84 2.59 -11.46 -0.03 -2.87 16 17 H 0.11 2.60 8.14 -2.39 -0.02 2.58 16 18 C -0.10 -2.41 5.26 30.65 0.16 -2.25 16 19 C 0.06 1.18 5.46 86.33 0.47 1.66 16 20 N -0.56 -11.09 4.75 -897.17 -4.26 -15.35 16 21 C 0.02 0.29 9.30 127.69 1.19 1.48 16 22 C 0.09 1.81 2.44 44.94 0.11 1.92 16 23 H 0.05 0.91 8.14 -2.39 -0.02 0.90 16 24 C -0.14 -2.58 8.79 71.98 0.63 -1.95 16 25 C -0.08 -2.35 3.96 30.65 0.12 -2.22 16 26 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.04 2.00 5.64 -2.39 -0.01 1.99 16 28 H 0.02 1.18 7.85 -2.38 -0.02 1.16 16 29 H 0.07 3.94 5.95 -2.39 -0.01 3.93 16 30 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 32 H 0.40 14.03 8.02 -92.71 -0.74 13.29 16 33 H 0.08 1.81 7.65 -2.39 -0.02 1.79 16 34 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 35 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.09 1.46 8.12 -2.39 -0.02 1.44 16 37 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.08 1.04 5.75 -2.39 -0.01 1.03 16 39 H 0.03 0.40 8.14 -2.39 -0.02 0.38 16 40 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.07 1.05 6.15 -2.39 -0.01 1.03 16 43 H 0.05 1.78 8.04 -2.39 -0.02 1.76 16 44 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -65.75 335.05 0.70 -65.05 By element: Atomic # 1 Polarization: 26.20 SS G_CDS: 0.22 Total: 26.42 kcal Atomic # 6 Polarization: -12.53 SS G_CDS: 4.71 Total: -7.82 kcal Atomic # 7 Polarization: -93.02 SS G_CDS: -6.21 Total: -99.23 kcal Atomic # 8 Polarization: -28.51 SS G_CDS: -0.04 Total: -28.55 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.13 kcal Total: -65.75 0.70 -65.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408227876.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.670 kcal (2) G-P(sol) polarization free energy of solvation -65.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds