Wall clock time and date at job start Mon Mar 30 2020 04:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53006 * 109.46730 * 2 1 4 4 C 1.52994 * 109.47408 * 120.00261 * 2 1 3 5 5 H 1.09000 * 110.88319 * 296.11785 * 4 2 1 6 6 C 1.55159 * 111.03901 * 172.21761 * 4 2 1 7 7 C 1.54310 * 102.86155 * 206.21424 * 6 4 2 8 8 N 1.47016 * 107.28056 * 22.52146 * 7 6 4 9 9 C 1.34778 * 125.65382 * 180.96752 * 8 7 6 10 10 O 1.21284 * 120.00447 * 179.69309 * 9 8 7 11 11 C 1.50703 * 119.99500 * 359.69574 * 9 8 7 12 12 H 1.08989 * 109.47395 * 39.99846 * 11 9 8 13 13 N 1.46904 * 109.46604 * 159.99997 * 11 9 8 14 14 C 1.52994 * 109.47021 * 279.99392 * 11 9 8 15 15 C 1.52996 * 109.47119 * 175.00079 * 14 11 9 16 16 C 1.50702 * 109.47159 * 180.02562 * 15 14 11 17 17 H 1.08002 * 120.00299 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99942 * 179.72211 * 16 15 14 19 19 N 1.31514 * 119.99698 * 0.28408 * 18 16 15 20 20 Si 1.86794 * 119.99837 * 180.27476 * 18 16 15 21 21 H 1.48504 * 109.47196 * 60.00645 * 20 18 16 22 22 H 1.48504 * 109.46887 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47679 * 300.00280 * 20 18 16 24 24 C 1.47437 * 108.70123 * 0.70597 * 8 7 6 25 25 H 1.08995 * 109.47109 * 60.00096 * 1 2 3 26 26 H 1.09002 * 109.46565 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47034 * 299.99729 * 1 2 3 28 28 H 1.09005 * 109.46760 * 240.00495 * 2 1 3 29 29 H 1.08998 * 109.46474 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.47000 * 299.99644 * 3 2 1 31 31 H 1.08998 * 109.47141 * 60.00337 * 3 2 1 32 32 H 1.09003 * 110.71533 * 324.76650 * 6 4 2 33 33 H 1.08994 * 110.71788 * 88.04069 * 6 4 2 34 34 H 1.09001 * 109.98732 * 263.04281 * 7 6 4 35 35 H 1.09001 * 109.77392 * 141.88264 * 7 6 4 36 36 H 1.00900 * 111.00049 * 59.99874 * 13 11 9 37 37 H 1.00908 * 110.99698 * 183.95171 * 13 11 9 38 38 H 1.09004 * 109.46806 * 55.00342 * 14 11 9 39 39 H 1.09000 * 109.47828 * 295.00646 * 14 11 9 40 40 H 1.09004 * 109.47066 * 60.00422 * 15 14 11 41 41 H 1.08994 * 109.47405 * 300.00252 * 15 14 11 42 42 H 0.97005 * 119.99651 * 179.97438 * 19 18 16 43 43 H 1.09003 * 110.36306 * 94.93457 * 24 8 7 44 44 H 1.08995 * 110.36471 * 217.14901 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 1.2491 5 1 1.7470 -0.1873 2.1530 6 6 3.5786 -0.9145 1.1916 7 6 3.8017 -2.1595 2.0755 8 7 2.5329 -2.9013 2.1133 9 6 2.3095 -4.0414 2.7965 10 8 1.2168 -4.5663 2.7597 11 6 3.4176 -4.6640 3.6062 12 1 3.9826 -3.8808 4.1114 13 7 2.8420 -5.5745 4.6050 14 6 4.3488 -5.4473 2.6788 15 6 5.5407 -5.9749 3.4799 16 6 6.4583 -6.7459 2.5662 17 1 6.2158 -6.8489 1.5189 18 6 7.6107 -7.3145 3.0662 19 7 7.9061 -7.1887 4.3416 20 14 8.7518 -8.2636 1.9322 21 1 9.2342 -7.3666 0.8514 22 1 9.9112 -8.7716 2.7088 23 1 8.0172 -9.4077 1.3349 24 6 1.5435 -2.1881 1.2850 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8901 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 3.9059 -1.0997 0.1686 33 1 4.0918 -0.0494 1.6113 34 1 4.0832 -1.8552 3.0836 35 1 4.5833 -2.7838 1.6427 36 1 2.3129 -6.3102 4.1613 37 1 3.5598 -5.9556 5.2031 38 1 4.7063 -4.7917 1.8847 39 1 3.8056 -6.2849 2.2413 40 1 5.1833 -6.6305 4.2740 41 1 6.0840 -5.1372 3.9172 42 1 8.7167 -7.5890 4.6934 43 1 1.5201 -2.6054 0.2783 44 1 0.5553 -2.2448 1.7415 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424156502.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:59 Heat of formation + Delta-G solvation = -66.704989 kcal Electronic energy + Delta-G solvation = -21047.694278 eV Core-core repulsion = 17998.505237 eV Total energy + Delta-G solvation = -3049.189042 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.14501 -38.16449 -35.42967 -35.13593 -32.83906 -30.78891 -29.87691 -29.10469 -27.23611 -26.43538 -24.40446 -22.66931 -21.99660 -20.43894 -19.98670 -18.88163 -17.39494 -16.26517 -16.23465 -15.29728 -15.17248 -14.54796 -14.35204 -14.20511 -13.92804 -13.71316 -13.40640 -13.27139 -13.09723 -12.63217 -12.49216 -12.29633 -12.14028 -12.01624 -11.74058 -11.66397 -11.16566 -11.06530 -10.90793 -10.79131 -10.73085 -10.69281 -10.67563 -9.95100 -9.87784 -9.28000 -9.18547 -8.50746 -8.43211 -8.15548 -6.08300 -4.11459 2.96798 3.11539 3.28404 3.33262 3.35756 4.23698 4.39424 4.41282 4.49660 4.81675 4.89297 5.03250 5.15029 5.18849 5.21500 5.26097 5.27945 5.38746 5.47486 5.56907 5.59038 5.61170 5.66388 5.73964 5.79354 5.80086 5.86958 5.89109 5.94673 6.04535 6.19251 6.32165 6.41253 6.56409 6.88677 7.46343 7.52764 7.62781 7.73537 7.88720 7.93386 8.31529 8.47711 8.94215 9.53281 11.02576 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.023944 B = 0.003923 C = 0.003574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.116633 B = 7136.363997 C = 7831.649837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.085 4.085 3 C -0.147 4.147 4 C -0.097 4.097 5 H 0.084 0.916 6 C -0.126 4.126 7 C 0.096 3.904 8 N -0.622 5.622 9 C 0.541 3.459 10 O -0.540 6.540 11 C 0.079 3.921 12 H 0.095 0.905 13 N -0.831 5.831 14 C -0.137 4.137 15 C 0.026 3.974 16 C -0.524 4.524 17 H 0.054 0.946 18 C 0.059 3.941 19 N -0.893 5.893 20 Si 0.893 3.107 21 H -0.277 1.277 22 H -0.286 1.286 23 H -0.277 1.277 24 C 0.112 3.888 25 H 0.054 0.946 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.073 0.927 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.345 0.655 37 H 0.354 0.646 38 H 0.056 0.944 39 H 0.054 0.946 40 H 0.018 0.982 41 H 0.018 0.982 42 H 0.262 0.738 43 H 0.064 0.936 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.151 16.349 -6.939 20.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.104 4.104 3 C -0.204 4.204 4 C -0.116 4.116 5 H 0.102 0.898 6 C -0.164 4.164 7 C -0.027 4.027 8 N -0.358 5.358 9 C 0.330 3.670 10 O -0.416 6.416 11 C -0.036 4.036 12 H 0.113 0.887 13 N -0.363 5.363 14 C -0.177 4.177 15 C -0.011 4.011 16 C -0.563 4.563 17 H 0.072 0.928 18 C -0.143 4.143 19 N -0.532 5.532 20 Si 0.721 3.279 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.202 1.202 24 C -0.010 4.010 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.091 0.909 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.096 0.904 33 H 0.100 0.900 34 H 0.088 0.912 35 H 0.095 0.905 36 H 0.158 0.842 37 H 0.169 0.831 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.036 0.964 41 H 0.036 0.964 42 H 0.072 0.928 43 H 0.082 0.918 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -11.016 16.558 -6.488 20.920 hybrid contribution 1.437 -1.244 -1.058 2.175 sum -9.579 15.314 -7.546 19.576 Atomic orbital electron populations 1.21888 0.95068 1.02116 1.01748 1.21065 0.95861 0.96215 0.97227 1.21834 1.01237 0.95612 1.01702 1.22453 0.95289 0.94950 0.98939 0.89760 1.22714 0.95772 0.97310 1.00566 1.22131 0.86850 0.93189 1.00564 1.48466 1.13109 1.24761 1.49456 1.20609 0.89467 0.78586 0.78329 1.90630 1.25883 1.61594 1.63515 1.21436 0.92063 0.96870 0.93242 0.88722 1.58750 1.29907 1.24869 1.22810 1.22373 0.97883 0.98749 0.98649 1.19088 0.90916 0.96036 0.95104 1.21147 1.06195 1.33579 0.95346 0.92794 1.25010 0.97857 0.96322 0.95084 1.69942 1.25721 1.44948 1.12590 0.86643 0.80247 0.80332 0.80706 1.20214 1.21207 1.20223 1.22211 0.93210 0.90519 0.95105 0.92691 0.92348 0.92606 0.90850 0.92402 0.92731 0.92676 0.90373 0.89998 0.91186 0.90457 0.84160 0.83066 0.92542 0.92755 0.96417 0.96354 0.92822 0.91791 0.90690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 8.97 37.16 0.33 -0.77 16 2 C -0.08 -0.63 2.44 -90.62 -0.22 -0.85 16 3 C -0.15 -0.94 9.06 37.16 0.34 -0.61 16 4 C -0.10 -0.87 2.56 -88.48 -0.23 -1.10 16 5 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 6 C -0.13 -1.12 5.66 -24.90 -0.14 -1.26 16 7 C 0.10 1.14 6.19 -3.07 -0.02 1.12 16 8 N -0.62 -9.06 3.33 -170.53 -0.57 -9.63 16 9 C 0.54 9.76 7.10 -10.98 -0.08 9.68 16 10 O -0.54 -11.32 16.50 5.55 0.09 -11.23 16 11 C 0.08 1.42 2.62 -68.86 -0.18 1.24 16 12 H 0.09 1.63 7.46 -51.94 -0.39 1.24 16 13 N -0.83 -15.04 8.94 -5.66 -0.05 -15.09 16 14 C -0.14 -2.77 4.77 -26.74 -0.13 -2.90 16 15 C 0.03 0.63 4.74 -27.88 -0.13 0.50 16 16 C -0.52 -14.47 9.11 -34.44 -0.31 -14.78 16 17 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 19 N -0.89 -26.07 13.29 55.43 0.74 -25.34 16 20 Si 0.89 21.31 29.54 -169.99 -5.02 16.28 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 C 0.11 1.36 5.27 -2.53 -0.01 1.35 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.46 7.23 -51.93 -0.38 0.09 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.56 8.08 -51.93 -0.42 0.14 16 29 H 0.06 0.36 7.56 -51.93 -0.39 -0.03 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.08 0.66 7.99 -51.93 -0.42 0.25 16 33 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.80 7.85 -51.93 -0.41 0.39 16 35 H 0.08 0.99 6.77 -51.93 -0.35 0.64 16 36 H 0.35 6.32 8.58 -39.29 -0.34 5.98 16 37 H 0.35 6.33 7.55 -39.29 -0.30 6.04 16 38 H 0.06 1.10 6.68 -51.93 -0.35 0.76 16 39 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.02 0.45 6.87 -51.93 -0.36 0.09 16 41 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.26 7.26 8.31 -40.82 -0.34 6.93 16 43 H 0.06 0.77 8.04 -51.93 -0.42 0.35 16 44 H 0.07 0.98 7.94 -51.93 -0.41 0.57 16 LS Contribution 346.65 15.07 5.22 5.22 Total: -1.00 -31.33 346.65 -8.31 -39.64 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: -7.84 Total: 6.96 kcal Atomic # 6 Polarization: -5.94 SS G_CDS: -0.88 Total: -6.82 kcal Atomic # 7 Polarization: -50.18 SS G_CDS: 0.12 Total: -50.06 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.09 Total: -11.23 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.33 -8.31 -39.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424156502.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.064 kcal (2) G-P(sol) polarization free energy of solvation -31.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds