Wall clock time and date at job start Mon Mar 30 2020 04:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47313 * 2 1 4 4 C 1.53002 * 109.46855 * 119.99403 * 2 1 3 5 5 H 1.08999 * 110.89142 * 297.57609 * 4 2 1 6 6 C 1.55160 * 111.00525 * 61.45702 * 4 2 1 7 7 C 1.54316 * 102.94589 * 153.57300 * 6 4 2 8 8 N 1.47023 * 107.27310 * 337.80658 * 7 6 4 9 9 C 1.34777 * 125.65037 * 178.90003 * 8 7 6 10 10 O 1.21283 * 119.99750 * 180.02562 * 9 8 7 11 11 C 1.50702 * 119.99928 * 0.30479 * 9 8 7 12 12 H 1.08995 * 109.47357 * 39.71838 * 11 9 8 13 13 N 1.46895 * 109.46992 * 159.72213 * 11 9 8 14 14 C 1.52998 * 109.46887 * 279.72410 * 11 9 8 15 15 C 1.53004 * 109.47272 * 175.00320 * 14 11 9 16 16 C 1.50698 * 109.47247 * 179.97438 * 15 14 11 17 17 H 1.08004 * 119.99938 * 359.97438 * 16 15 14 18 18 C 1.37874 * 119.99700 * 179.97438 * 16 15 14 19 19 N 1.31512 * 120.00235 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99716 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.46806 * 90.00562 * 20 18 16 22 22 H 1.48506 * 109.46941 * 210.00199 * 20 18 16 23 23 H 1.48494 * 109.47401 * 330.00370 * 20 18 16 24 24 C 1.47423 * 108.69861 * 359.16900 * 8 7 6 25 25 H 1.09002 * 109.47072 * 300.00637 * 1 2 3 26 26 H 1.09005 * 109.47036 * 60.00432 * 1 2 3 27 27 H 1.08999 * 109.47036 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47072 * 239.99362 * 2 1 3 29 29 H 1.08992 * 109.47076 * 59.99444 * 3 2 1 30 30 H 1.08996 * 109.46989 * 180.02562 * 3 2 1 31 31 H 1.09005 * 109.46716 * 299.99764 * 3 2 1 32 32 H 1.09005 * 110.71749 * 35.20645 * 6 4 2 33 33 H 1.09007 * 110.87025 * 272.01099 * 6 4 2 34 34 H 1.09003 * 109.88612 * 218.38895 * 7 6 4 35 35 H 1.09009 * 109.88270 * 97.22504 * 7 6 4 36 36 H 1.00901 * 111.00088 * 60.00223 * 13 11 9 37 37 H 1.00898 * 111.00134 * 183.95339 * 13 11 9 38 38 H 1.09003 * 109.47117 * 294.99838 * 14 11 9 39 39 H 1.08996 * 109.47757 * 54.99781 * 14 11 9 40 40 H 1.09003 * 109.46656 * 299.99800 * 15 14 11 41 41 H 1.09001 * 109.46758 * 59.99272 * 15 14 11 42 42 H 0.97000 * 120.00058 * 179.97438 * 19 18 16 43 43 H 1.09004 * 110.36551 * 142.74407 * 24 8 7 44 44 H 1.09003 * 110.36788 * 265.06036 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7211 1.2493 5 1 1.7250 -0.2011 2.1541 6 6 1.5727 -2.2006 1.2672 7 6 2.6595 -2.8962 2.1136 8 7 3.8608 -2.0501 2.0624 9 6 5.0254 -2.3004 2.6929 10 8 5.9544 -1.5289 2.5794 11 6 5.1753 -3.5420 3.5337 12 1 4.6819 -4.3781 3.0383 13 7 6.6018 -3.8475 3.7058 14 6 4.5343 -3.3107 4.9035 15 6 4.5756 -4.6092 5.7118 16 6 3.9447 -4.3812 7.0612 17 1 3.5539 -3.4074 7.3170 18 6 3.8666 -5.4158 7.9692 19 7 4.3430 -6.6014 7.6579 20 14 3.0853 -5.1329 9.6423 21 1 1.6307 -5.4214 9.5644 22 1 3.7156 -6.0329 10.6414 23 1 3.2886 -3.7199 10.0511 24 6 3.5783 -0.8792 1.2123 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.6766 1.9563 0.8899 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8901 32 1 1.5497 -2.6100 0.2572 33 1 0.5958 -2.2937 1.7418 34 1 2.8806 -3.8793 1.6979 35 1 2.3196 -2.9953 3.1446 36 1 7.0818 -3.0870 4.1634 37 1 6.7282 -4.7113 4.2117 38 1 5.0840 -2.5341 5.4354 39 1 3.4987 -2.9974 4.7719 40 1 4.0259 -5.3858 5.1798 41 1 5.6113 -4.9224 5.8433 42 1 4.2883 -7.3291 8.2969 43 1 4.0613 0.0097 1.6183 44 1 3.9141 -1.0616 0.1915 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424156504.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:04 Heat of formation + Delta-G solvation = -66.839332 kcal Electronic energy + Delta-G solvation = -21083.622831 eV Core-core repulsion = 18034.427964 eV Total energy + Delta-G solvation = -3049.194867 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.14653 -38.16502 -35.43250 -35.13195 -32.84162 -30.76833 -29.87937 -29.12277 -27.23957 -26.44371 -24.38186 -22.64920 -22.01985 -20.40634 -20.01898 -18.89755 -17.36460 -16.30757 -16.09441 -15.47828 -15.15841 -14.48984 -14.33084 -14.15845 -14.04075 -13.60727 -13.46313 -13.27242 -13.08553 -12.63017 -12.50216 -12.33176 -12.05879 -12.01464 -11.73463 -11.66255 -11.17349 -11.04736 -10.94221 -10.78393 -10.70965 -10.69574 -10.66460 -9.95578 -9.88352 -9.27141 -9.18209 -8.51106 -8.43637 -8.15412 -6.08535 -4.11663 2.96679 3.11456 3.26676 3.33586 3.37070 4.24707 4.39101 4.41965 4.50368 4.82399 4.89367 5.03845 5.16122 5.19692 5.22776 5.25589 5.27806 5.39807 5.47706 5.57206 5.60286 5.61441 5.67279 5.73992 5.79022 5.80116 5.87841 5.89653 5.95484 6.05309 6.20104 6.31766 6.41736 6.56207 6.88563 7.46392 7.52808 7.62556 7.73455 7.88596 7.93343 8.31362 8.47623 8.94239 9.53221 11.02365 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.021100 B = 0.004118 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.679085 B = 6798.359510 C = 7600.496399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.084 4.084 3 C -0.151 4.151 4 C -0.098 4.098 5 H 0.085 0.915 6 C -0.125 4.125 7 C 0.095 3.905 8 N -0.622 5.622 9 C 0.541 3.459 10 O -0.540 6.540 11 C 0.079 3.921 12 H 0.095 0.905 13 N -0.831 5.831 14 C -0.137 4.137 15 C 0.025 3.975 16 C -0.523 4.523 17 H 0.054 0.946 18 C 0.059 3.941 19 N -0.893 5.893 20 Si 0.892 3.108 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.274 1.274 24 C 0.113 3.887 25 H 0.055 0.945 26 H 0.053 0.947 27 H 0.057 0.943 28 H 0.072 0.928 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.345 0.655 37 H 0.354 0.646 38 H 0.054 0.946 39 H 0.056 0.944 40 H 0.018 0.982 41 H 0.018 0.982 42 H 0.262 0.738 43 H 0.074 0.926 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.583 10.364 -15.496 20.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.103 4.103 3 C -0.208 4.208 4 C -0.117 4.117 5 H 0.103 0.897 6 C -0.163 4.163 7 C -0.028 4.028 8 N -0.358 5.358 9 C 0.330 3.670 10 O -0.416 6.416 11 C -0.036 4.036 12 H 0.113 0.887 13 N -0.363 5.363 14 C -0.176 4.176 15 C -0.012 4.012 16 C -0.562 4.562 17 H 0.073 0.927 18 C -0.143 4.143 19 N -0.532 5.532 20 Si 0.720 3.280 21 H -0.206 1.206 22 H -0.211 1.211 23 H -0.199 1.199 24 C -0.010 4.010 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.091 0.909 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.094 0.906 33 H 0.101 0.899 34 H 0.088 0.912 35 H 0.096 0.904 36 H 0.158 0.842 37 H 0.169 0.831 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.036 0.964 41 H 0.036 0.964 42 H 0.071 0.929 43 H 0.093 0.907 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.920 10.532 -16.235 20.552 hybrid contribution -0.749 0.055 2.032 2.166 sum -7.669 10.587 -14.203 19.304 Atomic orbital electron populations 1.21844 0.94884 1.01986 1.01743 1.21050 0.95929 0.96155 0.97133 1.21880 1.01347 0.95781 1.01781 1.22427 0.94397 0.95837 0.99063 0.89657 1.22704 0.98398 0.94684 1.00527 1.22144 0.84878 0.94406 1.01355 1.48464 1.12931 1.24617 1.49764 1.20611 0.80239 0.87683 0.78453 1.90630 1.38649 1.49471 1.62861 1.21438 0.91544 0.94574 0.96056 0.88716 1.58745 1.08888 1.09093 1.59610 1.22375 0.99836 1.02116 0.93319 1.19097 0.97338 0.90544 0.94211 1.21178 1.38970 0.96539 0.99472 0.92749 1.25007 0.95492 0.95173 0.98608 1.69949 1.45983 1.01486 1.35773 0.86589 0.79416 0.78142 0.83850 1.20608 1.21140 1.19890 1.22155 0.94790 0.89379 0.94666 0.92601 0.92761 0.92357 0.90940 0.92558 0.92412 0.92701 0.90582 0.89870 0.91181 0.90438 0.84161 0.83064 0.92760 0.92538 0.96351 0.96409 0.92883 0.90724 0.91839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 8.99 37.16 0.33 -0.64 16 2 C -0.08 -0.63 2.43 -90.62 -0.22 -0.85 16 3 C -0.15 -1.11 9.04 37.16 0.34 -0.77 16 4 C -0.10 -0.91 2.55 -88.59 -0.23 -1.13 16 5 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 6 C -0.13 -1.11 5.36 -24.90 -0.13 -1.25 16 7 C 0.10 1.14 6.19 -3.07 -0.02 1.12 16 8 N -0.62 -9.06 3.33 -170.65 -0.57 -9.63 16 9 C 0.54 9.76 7.10 -10.98 -0.08 9.68 16 10 O -0.54 -11.32 16.51 5.55 0.09 -11.23 16 11 C 0.08 1.42 2.62 -68.87 -0.18 1.24 16 12 H 0.09 1.63 7.51 -51.93 -0.39 1.24 16 13 N -0.83 -15.05 8.94 -5.66 -0.05 -15.10 16 14 C -0.14 -2.77 4.77 -26.73 -0.13 -2.89 16 15 C 0.03 0.62 4.74 -27.88 -0.13 0.48 16 16 C -0.52 -14.41 9.11 -34.44 -0.31 -14.72 16 17 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 19 N -0.89 -26.04 13.29 55.43 0.74 -25.30 16 20 Si 0.89 21.28 29.54 -169.99 -5.02 16.25 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 24 C 0.11 1.37 5.55 -2.65 -0.01 1.35 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.06 0.37 7.32 -51.93 -0.38 -0.01 16 28 H 0.07 0.53 8.10 -51.93 -0.42 0.11 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.46 7.46 -51.93 -0.39 0.07 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.08 0.60 8.04 -51.93 -0.42 0.18 16 33 H 0.08 0.65 8.11 -51.92 -0.42 0.23 16 34 H 0.07 0.80 7.93 -51.93 -0.41 0.39 16 35 H 0.08 1.00 6.70 -51.92 -0.35 0.65 16 36 H 0.35 6.31 8.58 -39.29 -0.34 5.98 16 37 H 0.35 6.33 7.55 -39.29 -0.30 6.04 16 38 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.06 1.10 6.63 -51.93 -0.34 0.76 16 40 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.02 0.45 6.87 -51.93 -0.36 0.10 16 42 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 43 H 0.07 0.99 7.97 -51.93 -0.41 0.58 16 44 H 0.06 0.74 8.00 -51.93 -0.42 0.32 16 LS Contribution 346.64 15.07 5.22 5.22 Total: -1.00 -31.32 346.64 -8.30 -39.62 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -7.84 Total: 6.99 kcal Atomic # 6 Polarization: -5.96 SS G_CDS: -0.87 Total: -6.84 kcal Atomic # 7 Polarization: -50.15 SS G_CDS: 0.12 Total: -50.03 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.09 Total: -11.23 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.32 -8.30 -39.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424156504.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.216 kcal (2) G-P(sol) polarization free energy of solvation -31.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds