Wall clock time and date at job start Mon Mar 30 2020 04:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47313 * 2 1 4 4 C 1.53002 * 109.46855 * 119.99403 * 2 1 3 5 5 H 1.08999 * 110.89142 * 297.57609 * 4 2 1 6 6 C 1.55160 * 111.00525 * 61.45702 * 4 2 1 7 7 C 1.54316 * 102.94589 * 153.57300 * 6 4 2 8 8 N 1.47023 * 107.27310 * 337.80658 * 7 6 4 9 9 C 1.34777 * 125.65037 * 178.90003 * 8 7 6 10 10 O 1.21283 * 119.99750 * 180.02562 * 9 8 7 11 11 C 1.50702 * 119.99928 * 0.30479 * 9 8 7 12 12 H 1.08995 * 109.47357 * 39.71838 * 11 9 8 13 13 N 1.46895 * 109.46992 * 159.72213 * 11 9 8 14 14 C 1.52998 * 109.46887 * 279.72410 * 11 9 8 15 15 C 1.53004 * 109.47272 * 175.00320 * 14 11 9 16 16 C 1.50698 * 109.47247 * 179.97438 * 15 14 11 17 17 H 1.08004 * 119.99938 * 359.97438 * 16 15 14 18 18 C 1.37874 * 119.99700 * 179.97438 * 16 15 14 19 19 N 1.31512 * 120.00235 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99716 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.46806 * 90.00562 * 20 18 16 22 22 H 1.48506 * 109.46941 * 210.00199 * 20 18 16 23 23 H 1.48494 * 109.47401 * 330.00370 * 20 18 16 24 24 C 1.47423 * 108.69861 * 359.16900 * 8 7 6 25 25 H 1.09002 * 109.47072 * 300.00637 * 1 2 3 26 26 H 1.09005 * 109.47036 * 60.00432 * 1 2 3 27 27 H 1.08999 * 109.47036 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47072 * 239.99362 * 2 1 3 29 29 H 1.08992 * 109.47076 * 59.99444 * 3 2 1 30 30 H 1.08996 * 109.46989 * 180.02562 * 3 2 1 31 31 H 1.09005 * 109.46716 * 299.99764 * 3 2 1 32 32 H 1.09005 * 110.71749 * 35.20645 * 6 4 2 33 33 H 1.09007 * 110.87025 * 272.01099 * 6 4 2 34 34 H 1.09003 * 109.88612 * 218.38895 * 7 6 4 35 35 H 1.09009 * 109.88270 * 97.22504 * 7 6 4 36 36 H 1.00901 * 111.00088 * 60.00223 * 13 11 9 37 37 H 1.00898 * 111.00134 * 183.95339 * 13 11 9 38 38 H 1.09003 * 109.47117 * 294.99838 * 14 11 9 39 39 H 1.08996 * 109.47757 * 54.99781 * 14 11 9 40 40 H 1.09003 * 109.46656 * 299.99800 * 15 14 11 41 41 H 1.09001 * 109.46758 * 59.99272 * 15 14 11 42 42 H 0.97000 * 120.00058 * 179.97438 * 19 18 16 43 43 H 1.09004 * 110.36551 * 142.74407 * 24 8 7 44 44 H 1.09003 * 110.36788 * 265.06036 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7211 1.2493 5 1 1.7250 -0.2011 2.1541 6 6 1.5727 -2.2006 1.2672 7 6 2.6595 -2.8962 2.1136 8 7 3.8608 -2.0501 2.0624 9 6 5.0254 -2.3004 2.6929 10 8 5.9544 -1.5289 2.5794 11 6 5.1753 -3.5420 3.5337 12 1 4.6819 -4.3781 3.0383 13 7 6.6018 -3.8475 3.7058 14 6 4.5343 -3.3107 4.9035 15 6 4.5756 -4.6092 5.7118 16 6 3.9447 -4.3812 7.0612 17 1 3.5539 -3.4074 7.3170 18 6 3.8666 -5.4158 7.9692 19 7 4.3430 -6.6014 7.6579 20 14 3.0853 -5.1329 9.6423 21 1 1.6307 -5.4214 9.5644 22 1 3.7156 -6.0329 10.6414 23 1 3.2886 -3.7199 10.0511 24 6 3.5783 -0.8792 1.2123 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.6766 1.9563 0.8899 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8901 32 1 1.5497 -2.6100 0.2572 33 1 0.5958 -2.2937 1.7418 34 1 2.8806 -3.8793 1.6979 35 1 2.3196 -2.9953 3.1446 36 1 7.0818 -3.0870 4.1634 37 1 6.7282 -4.7113 4.2117 38 1 5.0840 -2.5341 5.4354 39 1 3.4987 -2.9974 4.7719 40 1 4.0259 -5.3858 5.1798 41 1 5.6113 -4.9224 5.8433 42 1 4.2883 -7.3291 8.2969 43 1 4.0613 0.0097 1.6183 44 1 3.9141 -1.0616 0.1915 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424156504.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:04 Heat of formation + Delta-G solvation = -87.032161 kcal Electronic energy + Delta-G solvation = -21084.498458 eV Core-core repulsion = 18034.427964 eV Total energy + Delta-G solvation = -3050.070494 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.35026 -39.26465 -37.08978 -36.01156 -34.85169 -31.77744 -31.67739 -30.07313 -28.07018 -27.82694 -25.98905 -24.00733 -22.79765 -22.13035 -20.72658 -20.18142 -18.85553 -18.20907 -17.16709 -16.84042 -16.40309 -16.18962 -15.70116 -15.33126 -15.04699 -14.91202 -14.59694 -14.31295 -14.23070 -13.96437 -13.64983 -13.49179 -13.40261 -13.01070 -12.92326 -12.82696 -12.68662 -12.53281 -12.36487 -11.91666 -11.76790 -11.70651 -11.51305 -11.40276 -11.35278 -11.31715 -10.76919 -10.56684 -9.76680 -9.62360 -8.22037 -6.32729 1.39250 1.40275 1.50616 1.54306 1.91951 2.39539 3.11499 3.34358 3.62318 3.69747 3.75190 3.79336 4.05907 4.19314 4.19758 4.26041 4.35783 4.45215 4.48134 4.61356 4.67705 4.76662 4.82756 4.85844 4.89841 4.97121 5.04206 5.06356 5.07247 5.13358 5.24887 5.30505 5.38745 5.44831 5.50056 5.57365 5.62817 5.78844 6.02622 6.19807 6.43089 6.44725 6.81969 7.09902 7.36462 8.88779 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.021100 B = 0.004118 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.679085 B = 6798.359510 C = 7600.496399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.078 4.078 3 C -0.151 4.151 4 C -0.088 4.088 5 H 0.079 0.921 6 C -0.115 4.115 7 C 0.086 3.914 8 N -0.619 5.619 9 C 0.536 3.464 10 O -0.577 6.577 11 C 0.086 3.914 12 H 0.105 0.895 13 N -0.830 5.830 14 C -0.119 4.119 15 C 0.033 3.967 16 C -0.546 4.546 17 H 0.054 0.946 18 C 0.007 3.993 19 N -0.926 5.926 20 Si 0.959 3.041 21 H -0.270 1.270 22 H -0.282 1.282 23 H -0.269 1.269 24 C 0.107 3.893 25 H 0.052 0.948 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.079 0.921 29 H 0.053 0.947 30 H 0.047 0.953 31 H 0.065 0.935 32 H 0.093 0.907 33 H 0.100 0.900 34 H 0.078 0.922 35 H 0.067 0.933 36 H 0.344 0.656 37 H 0.354 0.646 38 H 0.041 0.959 39 H 0.064 0.936 40 H 0.003 0.997 41 H 0.002 0.998 42 H 0.264 0.736 43 H 0.058 0.942 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.484 10.856 -16.139 21.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.097 4.097 3 C -0.209 4.209 4 C -0.107 4.107 5 H 0.098 0.902 6 C -0.152 4.152 7 C -0.037 4.037 8 N -0.352 5.352 9 C 0.325 3.675 10 O -0.456 6.456 11 C -0.029 4.029 12 H 0.123 0.877 13 N -0.362 5.362 14 C -0.158 4.158 15 C -0.004 4.004 16 C -0.583 4.583 17 H 0.072 0.928 18 C -0.192 4.192 19 N -0.566 5.566 20 Si 0.784 3.216 21 H -0.195 1.195 22 H -0.208 1.208 23 H -0.193 1.193 24 C -0.015 4.015 25 H 0.072 0.928 26 H 0.081 0.919 27 H 0.083 0.917 28 H 0.097 0.903 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.084 0.916 32 H 0.112 0.888 33 H 0.118 0.882 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.157 0.843 37 H 0.169 0.831 38 H 0.060 0.940 39 H 0.082 0.918 40 H 0.021 0.979 41 H 0.020 0.980 42 H 0.073 0.927 43 H 0.077 0.923 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -8.865 11.029 -16.903 22.044 hybrid contribution -0.161 -0.100 2.193 2.201 sum -9.026 10.930 -14.709 20.428 Atomic orbital electron populations 1.21828 0.93812 1.02526 1.02078 1.21024 0.96679 0.95810 0.96199 1.21889 1.00761 0.96009 1.02221 1.22383 0.91975 0.96474 0.99910 0.90249 1.22723 0.97840 0.93652 1.01032 1.22390 0.84709 0.94904 1.01650 1.48534 1.12530 1.25538 1.48618 1.20488 0.80955 0.87174 0.78858 1.90608 1.40176 1.50394 1.64429 1.21344 0.91279 0.95310 0.94932 0.87737 1.58756 1.08956 1.09009 1.59458 1.22110 1.00389 0.99396 0.93934 1.18944 0.95752 0.91996 0.93735 1.21587 1.39213 0.96618 1.00928 0.92821 1.25856 0.95953 0.94879 1.02494 1.70059 1.47028 1.02309 1.37172 0.85533 0.78803 0.78173 0.79065 1.19529 1.20770 1.19329 1.22353 0.96968 0.87797 0.94332 0.92847 0.91916 0.91713 0.90302 0.92836 0.93361 0.91587 0.88800 0.88163 0.90380 0.91436 0.84329 0.83120 0.93978 0.91771 0.97878 0.97969 0.92678 0.92304 0.90996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 8.99 71.98 0.65 -0.85 16 2 C -0.08 -0.98 2.43 -10.79 -0.03 -1.01 16 3 C -0.15 -1.99 9.04 71.98 0.65 -1.34 16 4 C -0.09 -1.46 2.55 -9.48 -0.02 -1.49 16 5 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 6 C -0.11 -1.72 5.36 31.78 0.17 -1.55 16 7 C 0.09 1.91 6.19 86.73 0.54 2.44 16 8 N -0.62 -17.56 3.33 -812.22 -2.70 -20.26 16 9 C 0.54 19.34 7.10 87.66 0.62 19.96 16 10 O -0.58 -24.48 16.51 -3.04 -0.05 -24.53 16 11 C 0.09 3.12 2.62 44.17 0.12 3.24 16 12 H 0.10 3.56 7.51 -2.39 -0.02 3.54 16 13 N -0.83 -30.43 8.94 -171.81 -1.54 -31.97 16 14 C -0.12 -4.83 4.77 30.59 0.15 -4.68 16 15 C 0.03 1.64 4.74 29.85 0.14 1.78 16 16 C -0.55 -30.16 9.11 25.60 0.23 -29.92 16 17 H 0.05 2.90 7.74 -2.91 -0.02 2.88 16 18 C 0.01 0.38 5.46 84.65 0.46 0.84 16 19 N -0.93 -54.28 13.29 21.45 0.28 -53.99 16 20 Si 0.96 43.33 29.54 68.60 2.03 45.35 16 21 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 22 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 23 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 24 C 0.11 2.51 5.55 86.78 0.48 2.99 16 25 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 27 H 0.06 0.60 7.32 -2.39 -0.02 0.58 16 28 H 0.08 0.93 8.10 -2.39 -0.02 0.91 16 29 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.05 0.72 7.46 -2.39 -0.02 0.70 16 31 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 32 H 0.09 1.13 8.04 -2.38 -0.02 1.11 16 33 H 0.10 1.23 8.11 -2.38 -0.02 1.21 16 34 H 0.08 1.64 7.93 -2.39 -0.02 1.62 16 35 H 0.07 1.66 6.70 -2.38 -0.02 1.64 16 36 H 0.34 12.84 8.58 -89.69 -0.77 12.07 16 37 H 0.35 12.90 7.55 -89.70 -0.68 12.22 16 38 H 0.04 1.80 8.14 -2.39 -0.02 1.79 16 39 H 0.06 2.49 6.63 -2.39 -0.02 2.48 16 40 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 41 H 0.00 0.11 6.87 -2.39 -0.02 0.09 16 42 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 43 H 0.06 1.57 7.97 -2.39 -0.02 1.55 16 44 H 0.07 1.57 8.00 -2.39 -0.02 1.55 16 Total: -1.00 -66.74 346.64 1.71 -65.03 By element: Atomic # 1 Polarization: 30.42 SS G_CDS: -0.47 Total: 29.95 kcal Atomic # 6 Polarization: -13.74 SS G_CDS: 4.16 Total: -9.59 kcal Atomic # 7 Polarization: -102.27 SS G_CDS: -3.95 Total: -106.22 kcal Atomic # 8 Polarization: -24.48 SS G_CDS: -0.05 Total: -24.53 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.35 kcal Total: -66.74 1.71 -65.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424156504.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.998 kcal (2) G-P(sol) polarization free energy of solvation -66.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds