Wall clock time and date at job start Mon Mar 30 2020 05:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47159 * 2 1 4 4 H 1.08998 * 109.47472 * 54.99742 * 3 2 1 5 5 C 1.50707 * 109.46999 * 175.00247 * 3 2 1 6 6 H 1.08000 * 120.00172 * 120.00064 * 5 3 2 7 7 C 1.37877 * 119.99559 * 299.99492 * 5 3 2 8 8 N 1.31516 * 120.00348 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99869 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47259 * 60.00031 * 9 7 5 11 11 H 1.48502 * 109.47252 * 180.02562 * 9 7 5 12 12 H 1.48508 * 109.46810 * 299.99863 * 9 7 5 13 13 N 1.46504 * 109.47149 * 294.99568 * 3 2 1 14 14 C 1.34774 * 119.99781 * 85.00142 * 13 3 2 15 15 O 1.21286 * 119.99840 * 0.02562 * 14 13 3 16 16 C 1.50700 * 120.00176 * 180.02562 * 14 13 3 17 17 H 1.08999 * 110.87386 * 59.30213 * 16 14 13 18 18 C 1.55140 * 110.98806 * 295.45485 * 16 14 13 19 19 C 1.54373 * 102.99573 * 206.28280 * 18 16 14 20 20 N 1.47438 * 107.24664 * 22.23125 * 19 18 16 21 21 C 1.46903 * 111.00014 * 123.29429 * 20 19 18 22 22 C 1.47847 * 108.57147 * 1.02069 * 20 19 18 23 23 H 1.09005 * 110.46113 * 94.78462 * 22 20 19 24 24 C 1.52996 * 110.37478 * 217.07250 * 22 20 19 25 25 C 1.53001 * 109.47466 * 289.90139 * 24 22 20 26 26 H 1.08996 * 109.47120 * 60.00082 * 1 2 3 27 27 H 1.09000 * 109.46964 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46844 * 300.00368 * 1 2 3 29 29 H 1.09001 * 109.46844 * 239.99632 * 2 1 3 30 30 H 1.09005 * 109.47072 * 119.99849 * 2 1 3 31 31 H 0.97001 * 120.00072 * 179.97438 * 8 7 5 32 32 H 0.96994 * 120.00168 * 264.72639 * 13 3 2 33 33 H 1.08994 * 110.70844 * 324.63492 * 18 16 14 34 34 H 1.09003 * 110.70779 * 87.87353 * 18 16 14 35 35 H 1.09002 * 109.84833 * 262.83596 * 19 18 16 36 36 H 1.08997 * 110.04214 * 141.73258 * 19 18 16 37 37 H 1.09008 * 109.46556 * 304.62437 * 21 20 19 38 38 H 1.09003 * 109.47497 * 64.61946 * 21 20 19 39 39 H 1.08995 * 109.47228 * 184.62410 * 21 20 19 40 40 H 1.09007 * 109.47039 * 49.90169 * 24 22 20 41 41 H 1.09000 * 109.47157 * 169.90255 * 24 22 20 42 42 H 1.08995 * 109.47536 * 307.02559 * 25 24 22 43 43 H 1.09008 * 109.46769 * 67.02281 * 25 24 22 44 44 H 1.09000 * 109.47314 * 187.01850 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8417 5 6 3.5420 1.4442 0.1238 6 1 4.1473 1.8888 -0.6523 7 6 4.1433 0.8783 1.2280 8 7 3.4062 0.3366 2.1729 9 14 6.0050 0.8811 1.3818 10 1 6.4996 2.2812 1.3821 11 1 6.3978 0.2166 2.6504 12 1 6.5975 0.1470 0.2349 13 7 1.6525 2.0974 -1.2519 14 6 0.4353 2.6643 -1.3671 15 8 -0.3392 2.6327 -0.4342 16 6 0.0364 3.3376 -2.6550 17 1 0.0715 2.6350 -3.4876 18 6 0.9287 4.5756 -2.9344 19 6 0.0193 5.4697 -3.8042 20 7 -1.3736 5.0649 -3.5400 21 6 -2.1756 6.2068 -3.0808 22 6 -1.3664 3.9830 -2.5323 23 1 -1.5097 4.3927 -1.5324 24 6 -2.4551 2.9551 -2.8467 25 6 -3.8305 3.5734 -2.5879 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.8293 -0.0618 2.9496 32 1 2.2735 2.1265 -1.9964 33 1 1.1893 5.0806 -2.0043 34 1 1.8259 4.2882 -3.4827 35 1 0.2547 5.3226 -4.8583 36 1 0.1584 6.5170 -3.5360 37 1 -1.7014 6.6563 -2.2082 38 1 -2.2444 6.9467 -3.8783 39 1 -3.1758 5.8649 -2.8150 40 1 -2.3819 2.6566 -3.8926 41 1 -2.3241 2.0806 -2.2093 42 1 -3.8601 3.9841 -1.5788 43 1 -4.0125 4.3696 -3.3098 44 1 -4.5986 2.8070 -2.6910 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592570438.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:12 Heat of formation + Delta-G solvation = -50.247462 kcal Electronic energy + Delta-G solvation = -21898.996107 eV Core-core repulsion = 18850.520717 eV Total energy + Delta-G solvation = -3048.475390 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.01448 -38.05369 -35.01087 -33.28851 -32.55357 -32.01525 -30.67257 -28.06520 -27.07893 -25.79618 -23.23236 -22.62926 -21.90416 -20.13854 -19.64282 -19.21220 -17.36567 -16.21171 -15.67955 -15.34826 -14.83987 -14.51992 -14.36118 -13.88397 -13.69945 -13.27998 -13.06246 -12.92733 -12.68169 -12.54521 -12.19763 -12.00590 -11.70445 -11.44747 -11.27556 -11.21525 -11.01336 -10.99817 -10.81763 -10.60781 -10.46323 -10.40873 -10.31090 -10.14053 -9.62003 -9.05635 -8.88786 -8.49262 -8.33486 -7.79466 -6.12348 -4.21909 3.24687 3.30267 3.31040 3.41318 3.84690 4.21257 4.39756 4.61618 4.76851 5.02844 5.17867 5.18854 5.29064 5.38230 5.41344 5.43263 5.55452 5.66013 5.72826 5.74631 5.81236 5.94998 5.95796 6.13255 6.18715 6.22457 6.33573 6.40350 6.45875 6.51573 6.67526 6.97119 7.05419 7.10203 7.20891 7.38280 7.47921 7.62356 7.74529 7.90869 8.18912 8.69564 8.78280 9.16639 9.45816 10.92838 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.027494 B = 0.004937 C = 0.004385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.175516 B = 5670.230845 C = 6383.671485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.271 3.729 4 H 0.048 0.952 5 C -0.534 4.534 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.707 5.707 14 C 0.511 3.489 15 O -0.547 6.547 16 C -0.119 4.119 17 H 0.102 0.898 18 C -0.131 4.131 19 C 0.043 3.957 20 N -0.531 5.531 21 C 0.014 3.986 22 C 0.093 3.907 23 H 0.070 0.930 24 C -0.104 4.104 25 C -0.149 4.149 26 H 0.039 0.961 27 H 0.022 0.978 28 H 0.049 0.951 29 H 0.030 0.970 30 H 0.098 0.902 31 H 0.265 0.735 32 H 0.387 0.613 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.054 0.946 37 H 0.026 0.974 38 H 0.064 0.936 39 H 0.074 0.926 40 H 0.064 0.936 41 H 0.070 0.930 42 H 0.050 0.950 43 H 0.057 0.943 44 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.796 7.536 -11.462 15.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.065 0.935 5 C -0.573 4.573 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.354 5.354 14 C 0.295 3.705 15 O -0.426 6.426 16 C -0.141 4.141 17 H 0.120 0.880 18 C -0.170 4.170 19 C -0.084 4.084 20 N -0.255 5.255 21 C -0.134 4.134 22 C -0.015 4.015 23 H 0.088 0.912 24 C -0.142 4.142 25 C -0.206 4.206 26 H 0.058 0.942 27 H 0.041 0.959 28 H 0.068 0.932 29 H 0.049 0.951 30 H 0.116 0.884 31 H 0.075 0.925 32 H 0.219 0.781 33 H 0.091 0.909 34 H 0.100 0.900 35 H 0.096 0.904 36 H 0.073 0.927 37 H 0.044 0.956 38 H 0.083 0.917 39 H 0.092 0.908 40 H 0.083 0.917 41 H 0.089 0.911 42 H 0.069 0.931 43 H 0.076 0.924 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -8.555 7.231 -11.033 15.723 hybrid contribution 1.760 0.289 0.490 1.850 sum -6.795 7.520 -10.542 14.624 Atomic orbital electron populations 1.21834 0.98344 0.97979 1.01222 1.21929 0.92623 0.99848 1.02215 1.18759 0.94093 0.89164 0.81082 0.93458 1.21200 0.90778 1.39069 1.06240 0.92217 1.24880 0.98529 0.94816 0.95394 1.69886 1.35190 1.37536 1.09354 0.86532 0.84958 0.78281 0.77461 1.20231 1.21132 1.20166 1.46480 1.14532 1.55834 1.18535 1.20039 0.82785 0.79158 0.88547 1.90664 1.51484 1.59973 1.40471 1.22510 0.96056 0.97731 0.97821 0.88011 1.22749 0.98371 0.95259 1.00599 1.22825 0.87518 0.97923 1.00182 1.63539 1.10634 1.08747 1.42559 1.22688 0.98781 0.93181 0.98788 1.22403 0.93336 0.91499 0.94287 0.91207 1.21412 0.93594 0.97636 1.01575 1.21824 0.96871 1.00715 1.01226 0.94230 0.95926 0.93214 0.95090 0.88361 0.92527 0.78073 0.90903 0.90029 0.90444 0.92702 0.95585 0.91717 0.90756 0.91688 0.91147 0.93076 0.92400 0.93173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 8.52 37.16 0.32 -2.72 16 2 C -0.13 -3.09 5.45 -26.73 -0.15 -3.23 16 3 C 0.27 6.74 2.24 -69.08 -0.15 6.58 16 4 H 0.05 1.37 7.58 -51.93 -0.39 0.98 16 5 C -0.53 -13.97 8.73 -34.44 -0.30 -14.28 16 6 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.63 11.29 55.43 0.63 -24.00 16 9 Si 0.90 20.49 29.54 -169.99 -5.02 15.47 16 10 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 11 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 13 N -0.71 -14.33 5.01 -54.93 -0.28 -14.61 16 14 C 0.51 9.80 5.71 -10.99 -0.06 9.74 16 15 O -0.55 -12.35 12.89 5.55 0.07 -12.28 16 16 C -0.12 -1.75 2.84 -89.64 -0.25 -2.00 16 17 H 0.10 1.38 8.06 -51.93 -0.42 0.96 16 18 C -0.13 -1.66 6.40 -24.88 -0.16 -1.82 16 19 C 0.04 0.49 6.90 -2.81 -0.02 0.47 16 20 N -0.53 -6.51 5.04 -231.56 -1.17 -7.68 16 21 C 0.01 0.15 8.88 60.07 0.53 0.68 16 22 C 0.09 1.32 1.62 -66.19 -0.11 1.21 16 23 H 0.07 1.16 7.11 -51.93 -0.37 0.79 16 24 C -0.10 -1.40 5.63 -26.73 -0.15 -1.55 16 25 C -0.15 -1.75 8.77 37.16 0.33 -1.42 16 26 H 0.04 0.85 5.65 -51.93 -0.29 0.56 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.05 1.18 7.85 -51.93 -0.41 0.77 16 29 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.10 2.64 5.95 -51.93 -0.31 2.33 16 31 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 32 H 0.39 6.91 8.54 -40.82 -0.35 6.56 16 33 H 0.07 1.03 8.03 -51.93 -0.42 0.61 16 34 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.05 0.57 7.56 -51.93 -0.39 0.17 16 37 H 0.03 0.29 8.11 -51.92 -0.42 -0.13 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.76 5.32 -51.93 -0.28 0.49 16 40 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.05 0.62 8.13 -51.93 -0.42 0.20 16 43 H 0.06 0.62 6.39 -51.92 -0.33 0.29 16 44 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 337.52 15.07 5.09 5.09 Total: -1.00 -28.83 337.52 -8.68 -37.50 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -7.72 Total: 7.16 kcal Atomic # 6 Polarization: -6.37 SS G_CDS: -0.27 Total: -6.64 kcal Atomic # 7 Polarization: -45.47 SS G_CDS: -0.82 Total: -46.29 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: 0.07 Total: -12.28 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -28.83 -8.68 -37.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592570438.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.743 kcal (2) G-P(sol) polarization free energy of solvation -28.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds