Wall clock time and date at job start Mon Mar 30 2020 05:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47159 * 2 1 4 4 H 1.08998 * 109.47472 * 54.99742 * 3 2 1 5 5 C 1.50707 * 109.46999 * 175.00247 * 3 2 1 6 6 H 1.08000 * 120.00172 * 120.00064 * 5 3 2 7 7 C 1.37877 * 119.99559 * 299.99492 * 5 3 2 8 8 N 1.31516 * 120.00348 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99869 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47259 * 60.00031 * 9 7 5 11 11 H 1.48502 * 109.47252 * 180.02562 * 9 7 5 12 12 H 1.48508 * 109.46810 * 299.99863 * 9 7 5 13 13 N 1.46504 * 109.47149 * 294.99568 * 3 2 1 14 14 C 1.34774 * 119.99781 * 85.00142 * 13 3 2 15 15 O 1.21286 * 119.99840 * 0.02562 * 14 13 3 16 16 C 1.50700 * 120.00176 * 180.02562 * 14 13 3 17 17 H 1.08999 * 110.87386 * 59.30213 * 16 14 13 18 18 C 1.55140 * 110.98806 * 295.45485 * 16 14 13 19 19 C 1.54373 * 102.99573 * 206.28280 * 18 16 14 20 20 N 1.47438 * 107.24664 * 22.23125 * 19 18 16 21 21 C 1.46903 * 111.00014 * 123.29429 * 20 19 18 22 22 C 1.47847 * 108.57147 * 1.02069 * 20 19 18 23 23 H 1.09005 * 110.46113 * 94.78462 * 22 20 19 24 24 C 1.52996 * 110.37478 * 217.07250 * 22 20 19 25 25 C 1.53001 * 109.47466 * 289.90139 * 24 22 20 26 26 H 1.08996 * 109.47120 * 60.00082 * 1 2 3 27 27 H 1.09000 * 109.46964 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46844 * 300.00368 * 1 2 3 29 29 H 1.09001 * 109.46844 * 239.99632 * 2 1 3 30 30 H 1.09005 * 109.47072 * 119.99849 * 2 1 3 31 31 H 0.97001 * 120.00072 * 179.97438 * 8 7 5 32 32 H 0.96994 * 120.00168 * 264.72639 * 13 3 2 33 33 H 1.08994 * 110.70844 * 324.63492 * 18 16 14 34 34 H 1.09003 * 110.70779 * 87.87353 * 18 16 14 35 35 H 1.09002 * 109.84833 * 262.83596 * 19 18 16 36 36 H 1.08997 * 110.04214 * 141.73258 * 19 18 16 37 37 H 1.09008 * 109.46556 * 304.62437 * 21 20 19 38 38 H 1.09003 * 109.47497 * 64.61946 * 21 20 19 39 39 H 1.08995 * 109.47228 * 184.62410 * 21 20 19 40 40 H 1.09007 * 109.47039 * 49.90169 * 24 22 20 41 41 H 1.09000 * 109.47157 * 169.90255 * 24 22 20 42 42 H 1.08995 * 109.47536 * 307.02559 * 25 24 22 43 43 H 1.09008 * 109.46769 * 67.02281 * 25 24 22 44 44 H 1.09000 * 109.47314 * 187.01850 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8417 5 6 3.5420 1.4442 0.1238 6 1 4.1473 1.8888 -0.6523 7 6 4.1433 0.8783 1.2280 8 7 3.4062 0.3366 2.1729 9 14 6.0050 0.8811 1.3818 10 1 6.4996 2.2812 1.3821 11 1 6.3978 0.2166 2.6504 12 1 6.5975 0.1470 0.2349 13 7 1.6525 2.0974 -1.2519 14 6 0.4353 2.6643 -1.3671 15 8 -0.3392 2.6327 -0.4342 16 6 0.0364 3.3376 -2.6550 17 1 0.0715 2.6350 -3.4876 18 6 0.9287 4.5756 -2.9344 19 6 0.0193 5.4697 -3.8042 20 7 -1.3736 5.0649 -3.5400 21 6 -2.1756 6.2068 -3.0808 22 6 -1.3664 3.9830 -2.5323 23 1 -1.5097 4.3927 -1.5324 24 6 -2.4551 2.9551 -2.8467 25 6 -3.8305 3.5734 -2.5879 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.8293 -0.0618 2.9496 32 1 2.2735 2.1265 -1.9964 33 1 1.1893 5.0806 -2.0043 34 1 1.8259 4.2882 -3.4827 35 1 0.2547 5.3226 -4.8583 36 1 0.1584 6.5170 -3.5360 37 1 -1.7014 6.6563 -2.2082 38 1 -2.2444 6.9467 -3.8783 39 1 -3.1758 5.8649 -2.8150 40 1 -2.3819 2.6566 -3.8926 41 1 -2.3241 2.0806 -2.2093 42 1 -3.8601 3.9841 -1.5788 43 1 -4.0125 4.3696 -3.3098 44 1 -4.5986 2.8070 -2.6910 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592570438.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:12 Heat of formation + Delta-G solvation = -69.363726 kcal Electronic energy + Delta-G solvation = -21899.825050 eV Core-core repulsion = 18850.520717 eV Total energy + Delta-G solvation = -3049.304333 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.34744 -39.44499 -36.86441 -34.50664 -34.08600 -33.48753 -32.35110 -29.26649 -28.78925 -26.92145 -25.04740 -23.79865 -23.13734 -21.72585 -20.95467 -20.78130 -18.97560 -17.74431 -17.21149 -16.86589 -16.37822 -16.12792 -15.60518 -15.17026 -14.82997 -14.71715 -14.56603 -14.04124 -13.89125 -13.84308 -13.69004 -13.39514 -13.17483 -13.08663 -12.90094 -12.67834 -12.65831 -12.33877 -12.17793 -12.05813 -12.00621 -11.67319 -11.57726 -11.51653 -11.37577 -11.05694 -10.59923 -10.44756 -9.60482 -9.31455 -8.15765 -6.33300 1.44566 1.46128 1.53914 1.87202 2.35033 2.58417 3.09299 3.13698 3.55672 3.62743 3.91326 4.18641 4.25479 4.32831 4.39459 4.48539 4.49401 4.54009 4.55925 4.57693 4.71881 4.76746 4.78600 4.90806 4.93713 4.99348 5.06636 5.12559 5.19682 5.21250 5.26799 5.32627 5.44014 5.47672 5.56490 5.64568 5.80246 5.93724 5.98998 6.13038 6.17734 6.75008 7.02487 7.34234 7.61900 8.89267 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.027494 B = 0.004937 C = 0.004385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.175516 B = 5670.230845 C = 6383.671485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.121 4.121 3 C 0.279 3.721 4 H -0.005 1.005 5 C -0.548 4.548 6 H 0.071 0.929 7 C 0.016 3.984 8 N -0.916 5.916 9 Si 0.969 3.031 10 H -0.272 1.272 11 H -0.287 1.287 12 H -0.264 1.264 13 N -0.703 5.703 14 C 0.508 3.492 15 O -0.585 6.585 16 C -0.112 4.112 17 H 0.123 0.877 18 C -0.128 4.128 19 C 0.045 3.955 20 N -0.528 5.528 21 C 0.012 3.988 22 C 0.097 3.903 23 H 0.038 0.962 24 C -0.102 4.102 25 C -0.144 4.144 26 H 0.045 0.955 27 H 0.044 0.956 28 H 0.023 0.977 29 H 0.041 0.959 30 H 0.070 0.930 31 H 0.264 0.736 32 H 0.402 0.598 33 H 0.051 0.949 34 H 0.104 0.896 35 H 0.099 0.901 36 H 0.065 0.935 37 H 0.017 0.983 38 H 0.086 0.914 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.045 0.955 42 H 0.038 0.962 43 H 0.071 0.929 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.195 8.231 -14.158 17.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.160 4.160 3 C 0.176 3.824 4 H 0.012 0.988 5 C -0.586 4.586 6 H 0.089 0.911 7 C -0.184 4.184 8 N -0.554 5.554 9 Si 0.794 3.206 10 H -0.197 1.197 11 H -0.213 1.213 12 H -0.189 1.189 13 N -0.352 5.352 14 C 0.295 3.705 15 O -0.466 6.466 16 C -0.134 4.134 17 H 0.141 0.859 18 C -0.166 4.166 19 C -0.082 4.082 20 N -0.252 5.252 21 C -0.136 4.136 22 C -0.012 4.012 23 H 0.056 0.944 24 C -0.140 4.140 25 C -0.201 4.201 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.042 0.958 29 H 0.059 0.941 30 H 0.089 0.911 31 H 0.073 0.927 32 H 0.237 0.763 33 H 0.070 0.930 34 H 0.122 0.878 35 H 0.117 0.883 36 H 0.083 0.917 37 H 0.035 0.965 38 H 0.105 0.895 39 H 0.094 0.906 40 H 0.096 0.904 41 H 0.063 0.937 42 H 0.057 0.943 43 H 0.090 0.910 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.952 7.946 -13.772 17.778 hybrid contribution 1.521 0.112 1.354 2.040 sum -6.431 8.058 -12.418 16.140 Atomic orbital electron populations 1.21665 0.96974 0.99049 1.00231 1.21780 0.93746 0.99234 1.01215 1.18326 0.93549 0.89102 0.81435 0.98756 1.21555 0.91473 1.38934 1.06667 0.91070 1.25762 1.03237 0.94383 0.95027 1.70047 1.37119 1.38338 1.09877 0.85447 0.79206 0.78418 0.77553 1.19698 1.21281 1.18874 1.46245 1.15487 1.55925 1.17520 1.20831 0.81709 0.78233 0.89752 1.90652 1.52463 1.61094 1.42409 1.22486 0.96957 0.98590 0.95343 0.85892 1.22774 0.99277 0.94226 1.00338 1.22919 0.86285 0.98071 1.00931 1.63606 1.11523 1.08830 1.41254 1.22766 0.98539 0.93056 0.99258 1.22283 0.93252 0.92326 0.93348 0.94430 1.21374 0.94355 0.96613 1.01663 1.21781 0.96142 1.01299 1.00903 0.93606 0.93688 0.95762 0.94066 0.91139 0.92652 0.76337 0.93008 0.87794 0.88270 0.91658 0.96460 0.89527 0.90559 0.90355 0.93656 0.94261 0.91011 0.92152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.54 8.52 71.98 0.61 -4.92 16 2 C -0.12 -5.98 5.45 30.59 0.17 -5.81 16 3 C 0.28 14.31 2.24 44.24 0.10 14.40 16 4 H -0.01 -0.33 7.58 -2.39 -0.02 -0.35 16 5 C -0.55 -28.84 8.73 25.60 0.22 -28.62 16 6 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 7 C 0.02 0.86 5.29 84.65 0.45 1.31 16 8 N -0.92 -52.50 11.29 21.45 0.24 -52.26 16 9 Si 0.97 41.88 29.54 68.60 2.03 43.91 16 10 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 11 H -0.29 -12.38 7.11 99.48 0.71 -11.68 16 12 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 13 N -0.70 -28.64 5.01 -446.09 -2.24 -30.87 16 14 C 0.51 19.74 5.71 87.66 0.50 20.24 16 15 O -0.59 -27.58 12.89 -3.05 -0.04 -27.62 16 16 C -0.11 -3.15 2.84 -10.16 -0.03 -3.18 16 17 H 0.12 3.00 8.06 -2.39 -0.02 2.98 16 18 C -0.13 -2.97 6.40 31.79 0.20 -2.77 16 19 C 0.05 0.88 6.90 86.67 0.60 1.48 16 20 N -0.53 -11.73 5.04 -886.53 -4.47 -16.19 16 21 C 0.01 0.23 8.88 127.69 1.13 1.37 16 22 C 0.10 2.68 1.62 45.38 0.07 2.75 16 23 H 0.04 1.29 7.11 -2.38 -0.02 1.27 16 24 C -0.10 -2.66 5.63 30.59 0.17 -2.49 16 25 C -0.14 -3.22 8.77 71.98 0.63 -2.59 16 26 H 0.04 1.99 5.65 -2.39 -0.01 1.98 16 27 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.02 1.18 7.85 -2.39 -0.02 1.16 16 29 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.07 3.91 5.95 -2.38 -0.01 3.90 16 31 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 32 H 0.40 13.89 8.54 -92.71 -0.79 13.10 16 33 H 0.05 1.43 8.03 -2.39 -0.02 1.41 16 34 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.06 1.15 7.56 -2.39 -0.02 1.14 16 37 H 0.02 0.36 8.11 -2.38 -0.02 0.34 16 38 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.08 1.44 5.32 -2.39 -0.01 1.43 16 40 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 41 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.04 0.95 8.13 -2.39 -0.02 0.93 16 43 H 0.07 1.40 6.39 -2.38 -0.02 1.38 16 44 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -64.34 337.52 0.54 -63.80 By element: Atomic # 1 Polarization: 27.89 SS G_CDS: 0.18 Total: 28.07 kcal Atomic # 6 Polarization: -13.67 SS G_CDS: 4.83 Total: -8.83 kcal Atomic # 7 Polarization: -92.86 SS G_CDS: -6.46 Total: -99.32 kcal Atomic # 8 Polarization: -27.58 SS G_CDS: -0.04 Total: -27.62 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.91 kcal Total: -64.34 0.54 -63.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592570438.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.566 kcal (2) G-P(sol) polarization free energy of solvation -64.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds