Wall clock time and date at job start Mon Mar 30 2020 05:39:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.46776 * 2 1 4 4 H 1.08998 * 109.62532 * 297.68414 * 3 2 1 5 5 C 1.53238 * 109.62721 * 58.07665 * 3 2 1 6 6 N 1.46907 * 109.33597 * 173.53756 * 5 3 2 7 7 C 1.46902 * 110.99754 * 172.74731 * 6 5 3 8 8 C 1.46898 * 111.26947 * 296.89359 * 6 5 3 9 9 C 1.53238 * 109.34060 * 63.10659 * 8 6 5 10 10 N 1.47080 * 109.62572 * 177.30160 * 3 2 1 11 11 C 1.34780 * 120.88429 * 9.10817 * 10 3 2 12 12 O 1.21287 * 119.99802 * 5.37846 * 11 10 3 13 13 C 1.50693 * 120.00335 * 185.37772 * 11 10 3 14 14 C 1.53004 * 109.47272 * 180.02562 * 13 11 10 15 15 C 1.53004 * 109.46910 * 180.02562 * 14 13 11 16 16 C 1.50703 * 109.46781 * 179.97438 * 15 14 13 17 17 H 1.08000 * 119.99990 * 0.02562 * 16 15 14 18 18 C 1.37873 * 119.99629 * 180.02562 * 16 15 14 19 19 N 1.31522 * 119.99699 * 180.02562 * 18 16 15 20 20 Si 1.86794 * 120.00328 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.47460 * 90.00255 * 20 18 16 22 22 H 1.48507 * 109.47211 * 210.00310 * 20 18 16 23 23 H 1.48499 * 109.47170 * 330.00033 * 20 18 16 24 24 H 1.09001 * 109.47057 * 174.92610 * 1 2 3 25 25 H 1.08994 * 109.47618 * 54.91869 * 1 2 3 26 26 H 1.09000 * 109.46857 * 294.91997 * 1 2 3 27 27 H 1.09000 * 109.47573 * 119.99647 * 2 1 3 28 28 H 1.09000 * 109.47257 * 240.00589 * 2 1 3 29 29 H 1.08991 * 109.49432 * 293.49383 * 5 3 2 30 30 H 1.08997 * 109.49273 * 53.55129 * 5 3 2 31 31 H 1.08997 * 109.46916 * 59.99735 * 7 6 5 32 32 H 1.08994 * 109.46827 * 180.02562 * 7 6 5 33 33 H 1.09000 * 109.47181 * 299.99965 * 7 6 5 34 34 H 1.08996 * 109.49063 * 183.06336 * 8 6 5 35 35 H 1.09000 * 109.49629 * 303.15045 * 8 6 5 36 36 H 1.09003 * 109.62862 * 65.87693 * 9 8 6 37 37 H 1.08994 * 109.63290 * 186.46053 * 9 8 6 38 38 H 1.09000 * 109.47207 * 300.00287 * 13 11 10 39 39 H 1.08997 * 109.46820 * 60.00008 * 13 11 10 40 40 H 1.09001 * 109.46719 * 299.99650 * 14 13 11 41 41 H 1.08997 * 109.47226 * 60.00214 * 14 13 11 42 42 H 1.09000 * 109.47296 * 300.00078 * 15 14 13 43 43 H 1.08997 * 109.47093 * 60.00020 * 15 14 13 44 44 H 0.97001 * 119.99671 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.7122 1.9467 -0.9091 5 6 1.4919 2.1823 1.2251 6 7 2.1058 3.5146 1.3037 7 6 1.4824 4.3198 2.3625 8 6 3.5586 3.4211 1.4999 9 6 4.1914 2.7322 0.2862 10 7 3.5093 1.4472 0.0652 11 6 4.2113 0.3045 -0.0689 12 8 3.6399 -0.7297 -0.3430 13 6 5.7061 0.3117 0.1215 14 6 6.2535 -1.1020 -0.0858 15 6 7.7712 -1.0947 0.1082 16 6 8.3103 -2.4872 -0.0953 17 1 7.6377 -3.2963 -0.3390 18 6 9.6620 -2.7282 0.0297 19 7 10.1325 -3.9434 -0.1484 20 14 10.8251 -1.3289 0.4520 21 1 10.9598 -1.2251 1.9272 22 1 12.1570 -1.5936 -0.1492 23 1 10.2834 -0.0553 -0.0864 24 1 -0.3633 -1.0236 -0.0909 25 1 -0.3634 0.5906 -0.8409 26 1 -0.3633 0.4330 0.9320 27 1 1.8934 -0.5138 0.8900 28 1 1.8934 -0.5137 -0.8900 29 1 0.4106 2.2849 1.1343 30 1 1.7294 1.6181 2.1269 31 1 1.6095 3.8191 3.3222 32 1 1.9553 5.3011 2.3987 33 1 0.4193 4.4367 2.1517 34 1 3.9761 4.4221 1.6085 35 1 3.7678 2.8399 2.3980 36 1 4.0733 3.3623 -0.5954 37 1 5.2504 2.5570 0.4753 38 1 6.1614 0.9870 -0.6029 39 1 5.9422 0.6488 1.1308 40 1 5.7983 -1.7776 0.6384 41 1 6.0175 -1.4386 -1.0952 42 1 8.2268 -0.4189 -0.6156 43 1 8.0068 -0.7582 1.1178 44 1 11.0835 -4.1130 -0.0601 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594039846.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:14 Heat of formation + Delta-G solvation = -53.871291 kcal Electronic energy + Delta-G solvation = -21274.385525 eV Core-core repulsion = 18225.752995 eV Total energy + Delta-G solvation = -3048.632531 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.61986 -39.11330 -36.39692 -35.69833 -35.21575 -33.97014 -30.62563 -30.41868 -29.02285 -26.30390 -25.21973 -24.89066 -22.59505 -22.31736 -21.51531 -19.93479 -18.84385 -17.81054 -17.16136 -16.81959 -16.51876 -16.25167 -15.84647 -15.63048 -15.60406 -14.83629 -14.68020 -14.54707 -14.25710 -14.17401 -13.75095 -13.31107 -13.26200 -12.97417 -12.92872 -12.75002 -12.66968 -12.47981 -12.23086 -12.13811 -11.82981 -11.74000 -11.73370 -11.62049 -11.49548 -11.30985 -10.75037 -10.03177 -9.75759 -9.29617 -8.27757 -6.33497 1.38342 1.42093 1.54229 1.64819 1.95376 2.39242 2.89935 3.07326 3.52782 3.83194 3.88436 4.06812 4.08284 4.14847 4.21685 4.24638 4.29503 4.41061 4.50237 4.59697 4.64631 4.65997 4.71115 4.79232 4.83670 4.87082 4.89757 4.94500 5.02069 5.03878 5.04527 5.22515 5.30357 5.36735 5.54794 5.59699 5.67319 5.69108 5.97379 6.00732 6.30296 6.44111 6.75202 7.24337 7.30991 8.90026 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.026410 B = 0.004021 C = 0.003579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.938635 B = 6961.115094 C = 7821.201374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.112 4.112 3 C 0.151 3.849 4 H 0.081 0.919 5 C 0.053 3.947 6 N -0.551 5.551 7 C 0.025 3.975 8 C 0.040 3.960 9 C 0.104 3.896 10 N -0.616 5.616 11 C 0.511 3.489 12 O -0.570 6.570 13 C -0.131 4.131 14 C -0.078 4.078 15 C -0.008 4.008 16 C -0.540 4.540 17 H 0.019 0.981 18 C -0.004 4.004 19 N -0.958 5.958 20 Si 0.962 3.038 21 H -0.264 1.264 22 H -0.286 1.286 23 H -0.235 1.235 24 H 0.052 0.948 25 H 0.066 0.934 26 H 0.064 0.936 27 H 0.038 0.962 28 H 0.068 0.932 29 H 0.102 0.898 30 H 0.024 0.976 31 H 0.022 0.978 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.113 0.887 35 H 0.031 0.969 36 H 0.088 0.912 37 H 0.108 0.892 38 H 0.114 0.886 39 H 0.111 0.889 40 H 0.034 0.966 41 H 0.036 0.964 42 H 0.031 0.969 43 H 0.028 0.972 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.019 23.366 4.641 29.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.151 4.151 3 C 0.048 3.952 4 H 0.099 0.901 5 C -0.076 4.076 6 N -0.275 5.275 7 C -0.122 4.122 8 C -0.089 4.089 9 C -0.018 4.018 10 N -0.350 5.350 11 C 0.301 3.699 12 O -0.450 6.450 13 C -0.170 4.170 14 C -0.116 4.116 15 C -0.045 4.045 16 C -0.578 4.578 17 H 0.037 0.963 18 C -0.200 4.200 19 N -0.598 5.598 20 Si 0.784 3.216 21 H -0.189 1.189 22 H -0.212 1.212 23 H -0.158 1.158 24 H 0.071 0.929 25 H 0.085 0.915 26 H 0.083 0.917 27 H 0.057 0.943 28 H 0.087 0.913 29 H 0.121 0.879 30 H 0.042 0.958 31 H 0.041 0.959 32 H 0.102 0.898 33 H 0.096 0.904 34 H 0.131 0.869 35 H 0.049 0.951 36 H 0.106 0.894 37 H 0.126 0.874 38 H 0.132 0.868 39 H 0.129 0.871 40 H 0.053 0.947 41 H 0.055 0.945 42 H 0.049 0.951 43 H 0.046 0.954 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -18.262 22.983 4.055 29.634 hybrid contribution 0.796 -1.006 0.849 1.538 sum -17.466 21.977 4.904 28.498 Atomic orbital electron populations 1.21888 0.94385 1.02059 1.02469 1.21877 0.95878 0.94526 1.02774 1.21413 0.78752 0.96340 0.98682 0.90093 1.22527 1.00368 0.88736 0.95962 1.61980 1.04056 1.14150 1.47346 1.22422 1.00701 0.97800 0.91295 1.22570 0.87994 1.02068 0.96256 1.22142 0.97671 0.82896 0.99060 1.48402 1.06933 1.07777 1.71891 1.21142 0.90519 0.82797 0.75449 1.90705 1.71385 1.33831 1.49040 1.21765 0.90563 0.99338 1.05375 1.21023 0.95616 0.94899 1.00058 1.19537 0.93207 0.94698 0.97091 1.21557 0.93214 0.95266 1.47763 0.96302 1.26208 1.00449 0.98881 0.94416 1.70114 1.14581 1.23176 1.51965 0.85492 0.76992 0.79938 0.79190 1.18914 1.21172 1.15776 0.92876 0.91514 0.91711 0.94268 0.91312 0.87945 0.95755 0.95905 0.89808 0.90430 0.86940 0.95099 0.89376 0.87435 0.86791 0.87127 0.94709 0.94478 0.95089 0.95390 0.92499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.82 9.36 71.98 0.67 -2.14 16 2 C -0.11 -2.92 3.93 30.60 0.12 -2.80 16 3 C 0.15 3.32 3.19 44.96 0.14 3.46 16 4 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 5 C 0.05 0.92 4.31 86.38 0.37 1.29 16 6 N -0.55 -8.26 4.88 -921.49 -4.50 -12.76 16 7 C 0.03 0.27 9.58 127.69 1.22 1.50 16 8 C 0.04 0.55 5.62 86.38 0.49 1.03 16 9 C 0.10 1.67 6.51 86.34 0.56 2.23 16 10 N -0.62 -14.60 3.02 -793.91 -2.40 -17.00 16 11 C 0.51 15.99 7.52 87.65 0.66 16.65 16 12 O -0.57 -22.53 11.68 -3.05 -0.04 -22.56 16 13 C -0.13 -3.89 4.06 29.85 0.12 -3.77 16 14 C -0.08 -3.29 4.44 30.60 0.14 -3.16 16 15 C -0.01 -0.38 4.04 29.85 0.12 -0.26 16 16 C -0.54 -32.74 9.66 25.60 0.25 -32.50 16 17 H 0.02 1.28 7.99 -2.91 -0.02 1.26 16 18 C 0.00 -0.22 5.47 84.65 0.46 0.24 16 19 N -0.96 -62.22 13.96 21.45 0.30 -61.93 16 20 Si 0.96 44.02 27.47 68.60 1.88 45.90 16 21 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 22 H -0.29 -12.89 7.11 99.48 0.71 -12.19 16 23 H -0.23 -9.53 6.54 99.48 0.65 -8.88 16 24 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.06 1.00 6.85 -2.39 -0.02 0.98 16 27 H 0.04 1.21 7.36 -2.39 -0.02 1.20 16 28 H 0.07 2.24 6.17 -2.39 -0.01 2.23 16 29 H 0.10 1.45 6.88 -2.39 -0.02 1.44 16 30 H 0.02 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.02 0.26 8.14 -2.39 -0.02 0.24 16 32 H 0.08 0.68 8.08 -2.39 -0.02 0.67 16 33 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.11 1.03 8.06 -2.39 -0.02 1.01 16 35 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16 36 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.11 1.44 6.02 -2.39 -0.01 1.43 16 38 H 0.11 2.79 7.80 -2.39 -0.02 2.77 16 39 H 0.11 2.76 7.87 -2.39 -0.02 2.74 16 40 H 0.03 1.60 8.10 -2.39 -0.02 1.58 16 41 H 0.04 1.71 8.10 -2.39 -0.02 1.69 16 42 H 0.03 1.37 7.20 -2.39 -0.02 1.35 16 43 H 0.03 1.22 7.57 -2.39 -0.02 1.21 16 44 H 0.27 16.00 8.31 -92.71 -0.77 15.23 16 Total: -1.00 -76.25 336.96 1.46 -74.78 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: 0.89 Total: 11.79 kcal Atomic # 6 Polarization: -23.55 SS G_CDS: 5.33 Total: -18.22 kcal Atomic # 7 Polarization: -85.09 SS G_CDS: -6.60 Total: -91.69 kcal Atomic # 8 Polarization: -22.53 SS G_CDS: -0.04 Total: -22.56 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 1.88 Total: 45.90 kcal Total: -76.25 1.46 -74.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594039846.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.913 kcal (2) G-P(sol) polarization free energy of solvation -76.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds