Wall clock time and date at job start Mon Mar 30 2020 05:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.47209 * 2 1 4 4 H 1.08990 * 110.00192 * 54.26911 * 3 2 1 5 5 C 1.54321 * 109.88172 * 293.16729 * 3 2 1 6 6 C 1.55156 * 102.94391 * 218.39142 * 5 3 2 7 7 C 1.54691 * 101.67764 * 35.33687 * 6 5 3 8 8 N 1.47024 * 109.87951 * 175.36579 * 3 2 1 9 9 C 1.34778 * 125.64971 * 298.31587 * 8 3 2 10 10 O 1.21284 * 119.99690 * 354.99968 * 9 8 3 11 11 C 1.50695 * 120.00439 * 175.27046 * 9 8 3 12 12 H 1.09002 * 109.47313 * 39.72572 * 11 9 8 13 13 N 1.46905 * 109.47486 * 159.72524 * 11 9 8 14 14 C 1.53003 * 109.47103 * 279.72989 * 11 9 8 15 15 C 1.52999 * 109.46919 * 174.99842 * 14 11 9 16 16 C 1.53003 * 109.47067 * 179.97438 * 15 14 11 17 17 C 1.50696 * 109.47060 * 179.97438 * 16 15 14 18 18 H 1.07997 * 120.00337 * 0.02562 * 17 16 15 19 19 C 1.37881 * 119.99799 * 180.02562 * 17 16 15 20 20 N 1.31519 * 119.99928 * 180.02562 * 19 17 16 21 21 Si 1.86794 * 120.00141 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.47271 * 89.99889 * 21 19 17 23 23 H 1.48505 * 109.47521 * 210.00007 * 21 19 17 24 24 H 1.48501 * 109.47041 * 329.99994 * 21 19 17 25 25 H 1.09002 * 109.46539 * 65.11706 * 1 2 3 26 26 H 1.08993 * 109.47318 * 185.11503 * 1 2 3 27 27 H 1.09004 * 109.46625 * 305.12040 * 1 2 3 28 28 H 1.09006 * 109.46880 * 239.99797 * 2 1 3 29 29 H 1.08999 * 109.46851 * 120.00254 * 2 1 3 30 30 H 1.08997 * 110.72246 * 336.75778 * 5 3 2 31 31 H 1.09005 * 110.71845 * 99.85385 * 5 3 2 32 32 H 1.09000 * 111.00612 * 153.57817 * 6 5 3 33 33 H 1.09006 * 111.00874 * 277.39025 * 6 5 3 34 34 H 1.08996 * 110.39121 * 204.36030 * 7 6 5 35 35 H 1.09003 * 110.23206 * 82.10923 * 7 6 5 36 36 H 1.00904 * 110.99305 * 59.99815 * 13 11 9 37 37 H 1.00894 * 111.00273 * 183.95484 * 13 11 9 38 38 H 1.09005 * 109.46752 * 294.99338 * 14 11 9 39 39 H 1.08994 * 109.47309 * 55.00055 * 14 11 9 40 40 H 1.08996 * 109.47372 * 299.99795 * 15 14 11 41 41 H 1.09001 * 109.47308 * 60.00122 * 15 14 11 42 42 H 1.08996 * 109.47297 * 300.00380 * 16 15 14 43 43 H 1.09001 * 109.46517 * 60.00177 * 16 15 14 44 44 H 0.96998 * 119.99643 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6005 1.9933 0.8314 5 6 1.6767 2.1276 -1.3342 6 6 2.9299 2.9920 -1.6336 7 6 4.0668 2.0931 -1.0928 8 7 3.5060 1.4544 0.1117 9 6 4.2190 0.9675 1.1467 10 8 3.6490 0.5485 2.1318 11 6 5.7244 0.9492 1.0824 12 1 6.0794 1.8679 0.6154 13 7 6.2715 0.8480 2.4420 14 6 6.1850 -0.2536 0.2564 15 6 7.7047 -0.2033 0.0861 16 6 8.1654 -1.4064 -0.7394 17 6 9.6621 -1.3566 -0.9077 18 1 10.2282 -0.5480 -0.4694 19 6 10.3088 -2.3433 -1.6212 20 7 11.6151 -2.3001 -1.7677 21 14 9.3297 -3.7415 -2.3799 22 1 8.9138 -3.3655 -3.7550 23 1 10.1720 -4.9634 -2.4342 24 1 8.1247 -4.0073 -1.5537 25 1 -0.3632 0.4324 -0.9323 26 1 -0.3633 -1.0235 0.0916 27 1 -0.3633 0.5912 0.8406 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.5228 1.3868 -2.1188 31 1 0.7920 2.7535 -1.2179 32 1 3.0402 3.1626 -2.7045 33 1 2.8914 3.9370 -1.0915 34 1 4.9366 2.6962 -0.8325 35 1 4.3349 1.3385 -1.8324 36 1 5.9568 0.0039 2.8964 37 1 7.2791 0.8987 2.4310 38 1 5.9072 -1.1744 0.7693 39 1 5.7085 -0.2254 -0.7235 40 1 7.9826 0.7174 -0.4268 41 1 8.1813 -0.2315 1.0660 42 1 7.8875 -2.3270 -0.2262 43 1 7.6888 -1.3785 -1.7193 44 1 12.0700 -2.9941 -2.2700 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594432150.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:43 Heat of formation + Delta-G solvation = -62.435906 kcal Electronic energy + Delta-G solvation = -21168.335459 eV Core-core repulsion = 18119.331539 eV Total energy + Delta-G solvation = -3049.003920 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.43913 -37.95366 -36.02482 -33.75965 -33.27904 -31.72268 -31.47190 -28.42595 -27.90509 -25.79302 -23.96501 -22.58365 -21.96298 -20.70879 -20.21793 -18.84563 -17.55301 -16.74963 -16.44877 -15.51386 -15.03018 -14.80736 -14.67467 -14.33290 -14.09758 -13.85278 -13.50600 -13.40456 -13.12629 -12.74225 -12.64359 -12.33462 -12.16539 -11.95717 -11.78585 -11.55715 -11.43338 -11.39677 -11.02165 -10.96704 -10.77485 -10.68539 -10.04058 -9.95092 -9.79315 -9.48972 -9.24379 -8.71422 -8.58441 -8.51644 -6.08557 -4.06947 2.69881 2.86181 3.26666 3.34815 3.38335 4.19207 4.30294 4.41230 4.55480 4.70378 4.81469 4.86227 4.98467 5.05315 5.12519 5.18849 5.23218 5.25594 5.26136 5.41267 5.48037 5.53187 5.61901 5.65490 5.73991 5.81885 5.84228 5.88394 6.01201 6.08356 6.13006 6.34428 6.42157 6.53965 6.79823 7.13950 7.21374 7.34863 7.49274 7.57866 7.74546 8.23348 8.48907 8.96041 9.54024 11.04879 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.021262 B = 0.004148 C = 0.003963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.572459 B = 6747.911827 C = 7064.482406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.136 4.136 3 C 0.139 3.861 4 H 0.073 0.927 5 C -0.127 4.127 6 C -0.134 4.134 7 C 0.096 3.904 8 N -0.618 5.618 9 C 0.541 3.459 10 O -0.533 6.533 11 C 0.079 3.921 12 H 0.099 0.901 13 N -0.831 5.831 14 C -0.148 4.148 15 C -0.100 4.100 16 C -0.013 4.013 17 C -0.522 4.522 18 H 0.072 0.928 19 C 0.066 3.934 20 N -0.903 5.903 21 Si 0.880 3.120 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.266 1.266 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.063 0.937 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.349 0.651 37 H 0.352 0.648 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.057 0.943 41 H 0.054 0.946 42 H 0.014 0.986 43 H 0.010 0.990 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.003 9.517 0.005 23.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.175 4.175 3 C 0.035 3.965 4 H 0.091 0.909 5 C -0.165 4.165 6 C -0.172 4.172 7 C -0.027 4.027 8 N -0.354 5.354 9 C 0.329 3.671 10 O -0.408 6.408 11 C -0.036 4.036 12 H 0.117 0.883 13 N -0.363 5.363 14 C -0.188 4.188 15 C -0.138 4.138 16 C -0.050 4.050 17 C -0.560 4.560 18 H 0.090 0.910 19 C -0.135 4.135 20 N -0.542 5.542 21 Si 0.707 3.293 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.191 1.191 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.093 0.907 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.104 0.896 33 H 0.094 0.906 34 H 0.098 0.902 35 H 0.091 0.909 36 H 0.162 0.838 37 H 0.168 0.832 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.032 0.968 43 H 0.029 0.971 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -21.493 9.837 0.702 23.648 hybrid contribution 0.173 -1.676 -0.966 1.943 sum -21.320 8.160 -0.264 22.830 Atomic orbital electron populations 1.21705 0.95199 1.01857 1.01648 1.21890 0.96097 0.96332 1.03138 1.21586 0.80537 0.96467 0.97878 0.90853 1.22733 0.98254 0.99106 0.96444 1.22747 0.94246 0.98324 1.01851 1.22357 0.97163 0.96022 0.87183 1.48571 1.06675 1.60370 1.19776 1.20384 0.89443 0.76320 0.80915 1.90650 1.72270 1.47036 1.30847 1.21409 0.90364 1.00407 0.91441 0.88348 1.58681 1.15124 1.46625 1.15854 1.22414 0.99288 0.97033 1.00075 1.21474 0.91015 1.00680 1.00631 1.19553 0.97250 0.93518 0.94677 1.21139 0.90390 1.10597 1.33868 0.91017 1.25036 0.94752 0.97837 0.95845 1.69916 1.07905 1.34684 1.41684 0.86782 0.80445 0.82120 0.79950 1.20297 1.21332 1.19118 0.92688 0.92576 0.92656 0.91822 0.90702 0.90347 0.90152 0.89634 0.90589 0.90191 0.90911 0.83758 0.83247 0.91836 0.91643 0.92465 0.92725 0.96764 0.97140 0.92707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.68 37.16 0.36 -0.86 16 2 C -0.14 -1.46 5.40 -26.73 -0.14 -1.60 16 3 C 0.14 1.44 2.88 -66.96 -0.19 1.25 16 4 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 5 C -0.13 -0.92 5.68 -24.90 -0.14 -1.06 16 6 C -0.13 -0.93 7.07 -24.70 -0.17 -1.11 16 7 C 0.10 0.89 6.48 -2.65 -0.02 0.87 16 8 N -0.62 -7.41 3.07 -163.17 -0.50 -7.91 16 9 C 0.54 8.05 6.82 -10.99 -0.07 7.98 16 10 O -0.53 -9.56 15.43 5.55 0.09 -9.48 16 11 C 0.08 1.11 2.67 -68.86 -0.18 0.92 16 12 H 0.10 1.27 6.87 -51.93 -0.36 0.91 16 13 N -0.83 -11.86 8.94 -5.65 -0.05 -11.91 16 14 C -0.15 -2.29 4.84 -26.73 -0.13 -2.42 16 15 C -0.10 -1.85 4.92 -26.73 -0.13 -1.98 16 16 C -0.01 -0.29 4.04 -27.88 -0.11 -0.41 16 17 C -0.52 -14.68 9.66 -34.44 -0.33 -15.01 16 18 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 19 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 20 N -0.90 -27.71 13.96 55.43 0.77 -26.94 16 21 Si 0.88 21.65 27.47 -169.99 -4.67 16.99 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.27 -6.35 6.54 56.52 0.37 -5.98 16 25 H 0.05 0.38 7.63 -51.93 -0.40 -0.02 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.68 8.03 -51.93 -0.42 0.26 16 29 H 0.07 1.02 6.90 -51.93 -0.36 0.66 16 30 H 0.08 0.54 7.77 -51.93 -0.40 0.13 16 31 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.08 0.71 6.98 -51.93 -0.36 0.34 16 35 H 0.07 0.68 7.99 -51.93 -0.41 0.26 16 36 H 0.35 5.11 8.58 -39.29 -0.34 4.78 16 37 H 0.35 4.70 7.55 -39.30 -0.30 4.41 16 38 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.06 0.97 7.83 -51.93 -0.41 0.57 16 40 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.05 0.99 6.87 -51.93 -0.36 0.64 16 42 H 0.01 0.34 7.20 -51.93 -0.37 -0.04 16 43 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 44 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 344.42 15.07 5.19 5.19 Total: -1.00 -32.56 344.42 -8.38 -40.94 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -7.84 Total: 4.71 kcal Atomic # 6 Polarization: -10.22 SS G_CDS: -1.37 Total: -11.59 kcal Atomic # 7 Polarization: -46.98 SS G_CDS: 0.22 Total: -46.76 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: 0.09 Total: -9.48 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.67 Total: 16.99 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.56 -8.38 -40.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594432150.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.494 kcal (2) G-P(sol) polarization free energy of solvation -32.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds