Wall clock time and date at job start Mon Mar 30 2020 05:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46739 * 2 1 4 4 H 1.08999 * 110.00106 * 306.55762 * 3 2 1 5 5 C 1.54316 * 109.77517 * 67.71965 * 3 2 1 6 6 C 1.55150 * 102.86376 * 141.88115 * 5 3 2 7 7 C 1.54909 * 101.58524 * 324.30523 * 6 5 3 8 8 N 1.47026 * 109.87747 * 185.46556 * 3 2 1 9 9 C 1.34771 * 125.64917 * 61.68211 * 8 3 2 10 10 O 1.21284 * 120.00291 * 354.80943 * 9 8 3 11 11 C 1.50702 * 119.99953 * 174.80864 * 9 8 3 12 12 H 1.09000 * 109.47122 * 319.99604 * 11 9 8 13 13 N 1.46909 * 109.47076 * 200.00151 * 11 9 8 14 14 C 1.52993 * 109.47169 * 80.00192 * 11 9 8 15 15 C 1.53000 * 109.47213 * 184.99952 * 14 11 9 16 16 C 1.53001 * 109.47480 * 179.97438 * 15 14 11 17 17 C 1.50696 * 109.47674 * 180.02562 * 16 15 14 18 18 H 1.08000 * 119.99466 * 359.97438 * 17 16 15 19 19 C 1.37869 * 120.00120 * 180.02562 * 17 16 15 20 20 N 1.31511 * 120.00343 * 0.02562 * 19 17 16 21 21 Si 1.86812 * 119.99752 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46895 * 180.02562 * 21 19 17 23 23 H 1.48496 * 109.47068 * 299.99902 * 21 19 17 24 24 H 1.48493 * 109.46897 * 59.99899 * 21 19 17 25 25 H 1.08993 * 109.47322 * 64.95523 * 1 2 3 26 26 H 1.09007 * 109.46744 * 184.95534 * 1 2 3 27 27 H 1.08999 * 109.46968 * 304.94935 * 1 2 3 28 28 H 1.09000 * 109.46833 * 240.00194 * 2 1 3 29 29 H 1.08997 * 109.47401 * 119.99913 * 2 1 3 30 30 H 1.08997 * 110.92374 * 23.46456 * 5 3 2 31 31 H 1.09000 * 110.58744 * 260.14481 * 5 3 2 32 32 H 1.09000 * 111.00723 * 206.22641 * 6 5 3 33 33 H 1.09010 * 111.00500 * 82.38123 * 6 5 3 34 34 H 1.09005 * 110.36145 * 278.17242 * 7 6 5 35 35 H 1.08998 * 110.36865 * 155.85290 * 7 6 5 36 36 H 1.00905 * 110.99593 * 299.99712 * 13 11 9 37 37 H 1.00901 * 111.00000 * 63.95244 * 13 11 9 38 38 H 1.08999 * 109.47451 * 64.99654 * 14 11 9 39 39 H 1.09002 * 109.47046 * 304.99516 * 14 11 9 40 40 H 1.09007 * 109.47039 * 59.99821 * 15 14 11 41 41 H 1.08995 * 109.47409 * 299.99745 * 15 14 11 42 42 H 1.08999 * 109.47019 * 59.99803 * 16 15 14 43 43 H 1.09004 * 109.46775 * 300.00130 * 16 15 14 44 44 H 0.96997 * 120.00072 * 359.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5890 1.9974 -0.8227 5 6 1.6948 2.1183 1.3437 6 6 2.9493 2.9865 1.6260 7 6 4.0813 2.0881 1.0682 8 7 3.5042 1.4552 -0.1317 9 6 4.2029 0.9733 -1.1786 10 8 3.6287 0.3921 -2.0750 11 6 5.6976 1.1566 -1.2354 12 1 5.9552 2.1539 -0.8788 13 7 6.1581 0.9982 -2.6215 14 6 6.3741 0.1079 -0.3503 15 6 7.8808 0.3707 -0.3089 16 6 8.5572 -0.6776 0.5768 17 6 10.0412 -0.4185 0.6181 18 1 10.4600 0.4108 0.0674 19 6 10.8642 -1.2406 1.3581 20 7 10.3544 -2.2513 2.0275 21 14 12.7038 -0.9196 1.4088 22 1 13.3604 -1.9379 2.2675 23 1 13.2584 -1.0005 0.0336 24 1 12.9549 0.4341 1.9650 25 1 -0.3633 0.4350 -0.9310 26 1 -0.3633 -1.0239 0.0888 27 1 -0.3633 0.5887 0.8423 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.5556 1.3750 2.1288 31 1 0.8079 2.7436 1.2417 32 1 3.0753 3.1550 2.6955 33 1 2.8993 3.9324 1.0863 34 1 4.3595 1.3300 1.8004 35 1 4.9475 2.6926 0.7990 36 1 5.9309 0.0809 -2.9753 37 1 5.7754 1.7195 -3.2143 38 1 6.1897 -0.8858 -0.7586 39 1 5.9671 0.1672 0.6591 40 1 8.0652 1.3644 0.0995 41 1 8.2879 0.3114 -1.3182 42 1 8.3728 -1.6715 0.1688 43 1 8.1500 -0.6179 1.5861 44 1 9.3992 -2.4182 2.0009 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594432151.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:46 Heat of formation + Delta-G solvation = -70.282716 kcal Electronic energy + Delta-G solvation = -21119.997973 eV Core-core repulsion = 18070.653789 eV Total energy + Delta-G solvation = -3049.344183 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.54010 -38.03436 -35.80177 -33.83764 -33.45163 -31.77591 -31.28871 -28.31514 -27.54900 -25.29592 -23.81643 -22.63981 -22.03967 -20.79819 -20.26931 -18.96596 -17.46102 -16.72182 -16.41416 -15.85054 -15.45307 -14.83510 -14.40098 -14.30774 -13.74662 -13.70525 -13.64650 -13.37993 -12.97517 -12.84870 -12.67404 -12.35094 -11.95416 -11.82799 -11.49292 -11.46198 -11.27753 -11.04620 -10.96872 -10.88804 -10.68998 -10.65726 -10.12131 -10.07236 -9.72978 -9.52826 -8.79391 -8.67527 -8.39461 -8.25393 -6.29107 -3.97135 2.54951 2.86164 3.47966 3.50567 3.68971 4.16764 4.26878 4.52414 4.58390 4.61206 4.73233 4.86366 4.96016 5.01975 5.11036 5.15949 5.21656 5.34737 5.39519 5.45477 5.48167 5.52460 5.59301 5.68672 5.81501 5.84047 5.88168 5.96268 6.04000 6.08042 6.31515 6.35799 6.70492 6.86556 7.07429 7.10059 7.40849 7.47535 7.53861 7.65778 8.08104 8.31758 8.54940 8.96640 9.75049 11.11525 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.025985 B = 0.003696 C = 0.003567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.291182 B = 7573.270403 C = 7847.334692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.138 4.138 3 C 0.135 3.865 4 H 0.072 0.928 5 C -0.128 4.128 6 C -0.134 4.134 7 C 0.095 3.905 8 N -0.614 5.614 9 C 0.499 3.501 10 O -0.548 6.548 11 C 0.081 3.919 12 H 0.099 0.901 13 N -0.811 5.811 14 C -0.104 4.104 15 C -0.092 4.092 16 C 0.007 3.993 17 C -0.598 4.598 18 H 0.048 0.952 19 C 0.012 3.988 20 N -0.916 5.916 21 Si 1.068 2.932 22 H -0.283 1.283 23 H -0.288 1.288 24 H -0.288 1.288 25 H 0.053 0.947 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.078 0.922 29 H 0.062 0.938 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.350 0.650 37 H 0.338 0.662 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.046 0.954 41 H 0.065 0.935 42 H 0.005 0.995 43 H 0.003 0.997 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.502 10.842 -1.731 22.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.176 4.176 3 C 0.032 3.968 4 H 0.090 0.910 5 C -0.166 4.166 6 C -0.172 4.172 7 C -0.028 4.028 8 N -0.349 5.349 9 C 0.286 3.714 10 O -0.426 6.426 11 C -0.035 4.035 12 H 0.117 0.883 13 N -0.340 5.340 14 C -0.142 4.142 15 C -0.130 4.130 16 C -0.030 4.030 17 C -0.636 4.636 18 H 0.067 0.933 19 C -0.191 4.191 20 N -0.553 5.553 21 Si 0.897 3.103 22 H -0.209 1.209 23 H -0.215 1.215 24 H -0.215 1.215 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.097 0.903 29 H 0.081 0.919 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.104 0.896 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.100 0.900 36 H 0.164 0.836 37 H 0.150 0.850 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.064 0.936 41 H 0.083 0.917 42 H 0.023 0.977 43 H 0.021 0.979 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -17.565 10.052 -1.371 20.284 hybrid contribution -2.579 0.465 -0.801 2.740 sum -20.143 10.517 -2.172 22.827 Atomic orbital electron populations 1.21714 0.95295 1.01818 1.01629 1.21916 0.95984 0.96286 1.03401 1.21627 0.80843 0.96633 0.97692 0.91041 1.22742 0.98287 0.99161 0.96391 1.22795 0.94261 0.98221 1.01935 1.22438 0.97019 0.96210 0.87117 1.48733 1.06780 1.59970 1.19379 1.22227 0.91549 0.77329 0.80271 1.90651 1.71853 1.41875 1.38206 1.21722 0.86754 1.02408 0.92583 0.88311 1.59072 1.64163 1.09187 1.01539 1.21645 0.98456 0.96865 0.97233 1.21399 0.90596 0.99636 1.01328 1.19246 0.96056 0.93851 0.93889 1.22079 0.92602 1.15958 1.32997 0.93328 1.25846 1.06378 0.93492 0.93375 1.70779 1.15280 1.28663 1.40556 0.83558 0.74699 0.75778 0.76293 1.20866 1.21457 1.21500 0.92795 0.92551 0.92659 0.90317 0.91882 0.90240 0.90192 0.89560 0.90603 0.90686 0.90021 0.83601 0.84990 0.92071 0.92041 0.93568 0.91669 0.97721 0.97916 0.92211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.83 37.16 0.37 -0.88 16 2 C -0.14 -1.51 5.41 -26.73 -0.14 -1.66 16 3 C 0.14 1.41 2.93 -66.95 -0.20 1.21 16 4 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 5 C -0.13 -0.95 5.54 -24.90 -0.14 -1.09 16 6 C -0.13 -0.96 7.08 -24.59 -0.17 -1.14 16 7 C 0.09 0.93 6.05 -2.53 -0.02 0.91 16 8 N -0.61 -7.37 3.07 -163.02 -0.50 -7.87 16 9 C 0.50 7.26 6.90 -10.99 -0.08 7.18 16 10 O -0.55 -9.42 15.04 5.55 0.08 -9.34 16 11 C 0.08 1.17 2.54 -68.86 -0.17 0.99 16 12 H 0.10 1.31 7.00 -51.93 -0.36 0.94 16 13 N -0.81 -11.65 8.44 -5.65 -0.05 -11.70 16 14 C -0.10 -1.77 4.80 -26.73 -0.13 -1.90 16 15 C -0.09 -1.92 5.04 -26.73 -0.13 -2.06 16 16 C 0.01 0.17 4.28 -27.88 -0.12 0.05 16 17 C -0.60 -17.48 9.11 -34.45 -0.31 -17.80 16 18 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 19 C 0.01 0.36 5.46 -17.82 -0.10 0.26 16 20 N -0.92 -28.68 13.65 55.43 0.76 -27.93 16 21 Si 1.07 25.80 29.90 -169.99 -5.08 20.72 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.05 0.39 7.35 -51.93 -0.38 0.01 16 28 H 0.08 1.11 6.54 -51.93 -0.34 0.77 16 29 H 0.06 0.70 8.01 -51.93 -0.42 0.29 16 30 H 0.08 0.57 7.77 -51.93 -0.40 0.17 16 31 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.51 8.14 -51.92 -0.42 0.09 16 34 H 0.07 0.76 7.85 -51.93 -0.41 0.35 16 35 H 0.08 0.76 6.90 -51.93 -0.36 0.41 16 36 H 0.35 5.21 8.58 -39.29 -0.34 4.87 16 37 H 0.34 4.23 9.06 -39.29 -0.36 3.87 16 38 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.06 1.00 7.16 -51.93 -0.37 0.63 16 40 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.06 1.42 7.75 -51.93 -0.40 1.02 16 42 H 0.00 0.13 8.01 -51.93 -0.42 -0.29 16 43 H 0.00 0.07 8.01 -51.93 -0.42 -0.35 16 44 H 0.27 8.35 7.22 -40.82 -0.29 8.06 16 LS Contribution 346.48 15.07 5.22 5.22 Total: -1.00 -33.32 346.48 -8.76 -42.08 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -7.85 Total: 4.72 kcal Atomic # 6 Polarization: -14.55 SS G_CDS: -1.35 Total: -15.90 kcal Atomic # 7 Polarization: -47.70 SS G_CDS: 0.21 Total: -47.49 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: 0.08 Total: -9.34 kcal Atomic # 14 Polarization: 25.80 SS G_CDS: -5.08 Total: 20.72 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.32 -8.76 -42.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594432151.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.202 kcal (2) G-P(sol) polarization free energy of solvation -33.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds