Wall clock time and date at job start Mon Mar 30 2020 05:31:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46739 * 2 1 4 4 H 1.08999 * 110.00106 * 306.55762 * 3 2 1 5 5 C 1.54316 * 109.77517 * 67.71965 * 3 2 1 6 6 C 1.55150 * 102.86376 * 141.88115 * 5 3 2 7 7 C 1.54909 * 101.58524 * 324.30523 * 6 5 3 8 8 N 1.47026 * 109.87747 * 185.46556 * 3 2 1 9 9 C 1.34771 * 125.64917 * 61.68211 * 8 3 2 10 10 O 1.21284 * 120.00291 * 354.80943 * 9 8 3 11 11 C 1.50702 * 119.99953 * 174.80864 * 9 8 3 12 12 H 1.09000 * 109.47122 * 319.99604 * 11 9 8 13 13 N 1.46909 * 109.47076 * 200.00151 * 11 9 8 14 14 C 1.52993 * 109.47169 * 80.00192 * 11 9 8 15 15 C 1.53000 * 109.47213 * 184.99952 * 14 11 9 16 16 C 1.53001 * 109.47480 * 179.97438 * 15 14 11 17 17 C 1.50696 * 109.47674 * 180.02562 * 16 15 14 18 18 H 1.08000 * 119.99466 * 359.97438 * 17 16 15 19 19 C 1.37869 * 120.00120 * 180.02562 * 17 16 15 20 20 N 1.31511 * 120.00343 * 0.02562 * 19 17 16 21 21 Si 1.86812 * 119.99752 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46895 * 180.02562 * 21 19 17 23 23 H 1.48496 * 109.47068 * 299.99902 * 21 19 17 24 24 H 1.48493 * 109.46897 * 59.99899 * 21 19 17 25 25 H 1.08993 * 109.47322 * 64.95523 * 1 2 3 26 26 H 1.09007 * 109.46744 * 184.95534 * 1 2 3 27 27 H 1.08999 * 109.46968 * 304.94935 * 1 2 3 28 28 H 1.09000 * 109.46833 * 240.00194 * 2 1 3 29 29 H 1.08997 * 109.47401 * 119.99913 * 2 1 3 30 30 H 1.08997 * 110.92374 * 23.46456 * 5 3 2 31 31 H 1.09000 * 110.58744 * 260.14481 * 5 3 2 32 32 H 1.09000 * 111.00723 * 206.22641 * 6 5 3 33 33 H 1.09010 * 111.00500 * 82.38123 * 6 5 3 34 34 H 1.09005 * 110.36145 * 278.17242 * 7 6 5 35 35 H 1.08998 * 110.36865 * 155.85290 * 7 6 5 36 36 H 1.00905 * 110.99593 * 299.99712 * 13 11 9 37 37 H 1.00901 * 111.00000 * 63.95244 * 13 11 9 38 38 H 1.08999 * 109.47451 * 64.99654 * 14 11 9 39 39 H 1.09002 * 109.47046 * 304.99516 * 14 11 9 40 40 H 1.09007 * 109.47039 * 59.99821 * 15 14 11 41 41 H 1.08995 * 109.47409 * 299.99745 * 15 14 11 42 42 H 1.08999 * 109.47019 * 59.99803 * 16 15 14 43 43 H 1.09004 * 109.46775 * 300.00130 * 16 15 14 44 44 H 0.96997 * 120.00072 * 359.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5890 1.9974 -0.8227 5 6 1.6948 2.1183 1.3437 6 6 2.9493 2.9865 1.6260 7 6 4.0813 2.0881 1.0682 8 7 3.5042 1.4552 -0.1317 9 6 4.2029 0.9733 -1.1786 10 8 3.6287 0.3921 -2.0750 11 6 5.6976 1.1566 -1.2354 12 1 5.9552 2.1539 -0.8788 13 7 6.1581 0.9982 -2.6215 14 6 6.3741 0.1079 -0.3503 15 6 7.8808 0.3707 -0.3089 16 6 8.5572 -0.6776 0.5768 17 6 10.0412 -0.4185 0.6181 18 1 10.4600 0.4108 0.0674 19 6 10.8642 -1.2406 1.3581 20 7 10.3544 -2.2513 2.0275 21 14 12.7038 -0.9196 1.4088 22 1 13.3604 -1.9379 2.2675 23 1 13.2584 -1.0005 0.0336 24 1 12.9549 0.4341 1.9650 25 1 -0.3633 0.4350 -0.9310 26 1 -0.3633 -1.0239 0.0888 27 1 -0.3633 0.5887 0.8423 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.5556 1.3750 2.1288 31 1 0.8079 2.7436 1.2417 32 1 3.0753 3.1550 2.6955 33 1 2.8993 3.9324 1.0863 34 1 4.3595 1.3300 1.8004 35 1 4.9475 2.6926 0.7990 36 1 5.9309 0.0809 -2.9753 37 1 5.7754 1.7195 -3.2143 38 1 6.1897 -0.8858 -0.7586 39 1 5.9671 0.1672 0.6591 40 1 8.0652 1.3644 0.0995 41 1 8.2879 0.3114 -1.3182 42 1 8.3728 -1.6715 0.1688 43 1 8.1500 -0.6179 1.5861 44 1 9.3992 -2.4182 2.0009 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594432151.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:45 Heat of formation + Delta-G solvation = -92.383684 kcal Electronic energy + Delta-G solvation = -21120.956343 eV Core-core repulsion = 18070.653789 eV Total energy + Delta-G solvation = -3050.302553 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.55400 -39.01244 -37.30524 -35.58978 -34.48227 -33.08034 -32.59021 -29.51199 -28.74401 -26.74191 -25.19025 -23.93323 -23.09073 -21.98820 -21.61959 -19.99842 -18.85796 -18.51350 -17.38850 -17.09306 -16.53369 -15.81617 -15.65624 -15.58422 -15.31008 -15.13337 -14.85018 -14.42719 -14.33984 -14.01854 -13.79879 -13.42847 -13.07934 -13.01668 -12.66468 -12.63668 -12.54313 -12.43229 -12.19678 -12.10206 -11.93687 -11.65914 -11.62166 -11.55080 -11.53095 -11.16692 -10.63634 -10.51754 -9.81027 -9.71993 -8.66638 -6.36556 1.40117 1.53989 1.63024 1.82237 1.90919 2.59231 3.18209 3.28400 3.48602 3.59047 3.76123 3.80700 3.88078 4.01474 4.14273 4.17877 4.28718 4.37445 4.43488 4.50586 4.51845 4.66017 4.76151 4.77098 4.90959 4.92454 4.97678 5.03166 5.05979 5.08746 5.11207 5.15949 5.20417 5.32446 5.45569 5.52401 5.63019 5.93386 6.05276 6.21964 6.35609 6.40448 6.60948 6.98439 7.45765 8.74014 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.025985 B = 0.003696 C = 0.003567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.291182 B = 7573.270403 C = 7847.334692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.135 4.135 3 C 0.128 3.872 4 H 0.066 0.934 5 C -0.119 4.119 6 C -0.124 4.124 7 C 0.083 3.917 8 N -0.612 5.612 9 C 0.495 3.505 10 O -0.581 6.581 11 C 0.091 3.909 12 H 0.118 0.882 13 N -0.817 5.817 14 C -0.092 4.092 15 C -0.075 4.075 16 C 0.007 3.993 17 C -0.617 4.617 18 H 0.051 0.949 19 C -0.042 4.042 20 N -0.940 5.940 21 Si 1.118 2.882 22 H -0.284 1.284 23 H -0.271 1.271 24 H -0.265 1.265 25 H 0.052 0.948 26 H 0.056 0.944 27 H 0.077 0.923 28 H 0.041 0.959 29 H 0.057 0.943 30 H 0.084 0.916 31 H 0.102 0.898 32 H 0.106 0.894 33 H 0.084 0.916 34 H 0.070 0.930 35 H 0.087 0.913 36 H 0.345 0.655 37 H 0.350 0.650 38 H 0.043 0.957 39 H 0.069 0.931 40 H 0.056 0.944 41 H 0.056 0.944 42 H -0.021 1.021 43 H -0.010 1.010 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.899 13.065 -1.004 23.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.174 4.174 3 C 0.025 3.975 4 H 0.084 0.916 5 C -0.157 4.157 6 C -0.162 4.162 7 C -0.039 4.039 8 N -0.345 5.345 9 C 0.283 3.717 10 O -0.462 6.462 11 C -0.025 4.025 12 H 0.136 0.864 13 N -0.346 5.346 14 C -0.130 4.130 15 C -0.113 4.113 16 C -0.030 4.030 17 C -0.655 4.655 18 H 0.070 0.930 19 C -0.239 4.239 20 N -0.578 5.578 21 Si 0.939 3.061 22 H -0.209 1.209 23 H -0.196 1.196 24 H -0.190 1.190 25 H 0.072 0.928 26 H 0.076 0.924 27 H 0.095 0.905 28 H 0.060 0.940 29 H 0.076 0.924 30 H 0.103 0.897 31 H 0.121 0.879 32 H 0.124 0.876 33 H 0.103 0.897 34 H 0.088 0.912 35 H 0.105 0.895 36 H 0.159 0.841 37 H 0.163 0.837 38 H 0.062 0.938 39 H 0.088 0.912 40 H 0.074 0.926 41 H 0.074 0.926 42 H -0.002 1.002 43 H 0.008 0.992 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -17.998 12.314 -0.630 21.816 hybrid contribution -2.497 -0.246 -1.018 2.708 sum -20.495 12.068 -1.648 23.841 Atomic orbital electron populations 1.21675 0.93201 1.02400 1.02550 1.21862 0.97841 0.96415 1.01249 1.21829 0.79733 0.96378 0.99545 0.91572 1.22749 0.99314 0.99338 0.94318 1.22803 0.92538 0.97761 1.03088 1.22690 0.98452 0.96615 0.86130 1.48827 1.07791 1.58764 1.19099 1.22116 0.91563 0.77372 0.80668 1.90638 1.72375 1.43455 1.39689 1.21558 0.86698 1.02091 0.92145 0.86449 1.59076 1.64351 1.09393 1.01778 1.21427 0.96180 0.96989 0.98422 1.21156 0.92541 0.98208 0.99416 1.19217 0.95510 0.94230 0.94089 1.22530 0.94213 1.15970 1.32768 0.93032 1.27486 1.11149 0.92704 0.92534 1.70920 1.14495 1.30139 1.42213 0.82935 0.69172 0.76703 0.77303 1.20948 1.19601 1.19019 0.92838 0.92440 0.90453 0.94038 0.92395 0.89726 0.87927 0.87590 0.89685 0.91164 0.89451 0.84126 0.83702 0.93816 0.91220 0.92553 0.92557 1.00233 0.99207 0.93715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 9.83 71.98 0.71 -1.51 16 2 C -0.14 -2.96 5.41 30.60 0.17 -2.79 16 3 C 0.13 2.51 2.93 45.34 0.13 2.64 16 4 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 5 C -0.12 -1.41 5.54 31.78 0.18 -1.24 16 6 C -0.12 -1.38 7.08 31.98 0.23 -1.15 16 7 C 0.08 1.46 6.05 86.86 0.53 1.98 16 8 N -0.61 -14.14 3.07 -788.06 -2.42 -16.55 16 9 C 0.50 14.36 6.90 87.66 0.61 14.96 16 10 O -0.58 -20.44 15.04 -3.04 -0.05 -20.49 16 11 C 0.09 2.56 2.54 44.17 0.11 2.67 16 12 H 0.12 2.88 7.00 -2.39 -0.02 2.86 16 13 N -0.82 -23.18 8.44 -171.79 -1.45 -24.63 16 14 C -0.09 -3.15 4.80 30.59 0.15 -3.00 16 15 C -0.08 -3.15 5.04 30.59 0.15 -3.00 16 16 C 0.01 0.35 4.28 29.85 0.13 0.48 16 17 C -0.62 -36.24 9.11 25.60 0.23 -36.00 16 18 H 0.05 2.94 7.74 -2.91 -0.02 2.91 16 19 C -0.04 -2.50 5.46 84.65 0.46 -2.03 16 20 N -0.94 -59.79 13.65 21.44 0.29 -59.49 16 21 Si 1.12 51.10 29.90 68.60 2.05 53.15 16 22 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 23 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 24 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 25 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 27 H 0.08 0.88 7.35 -2.39 -0.02 0.87 16 28 H 0.04 1.22 6.54 -2.39 -0.02 1.20 16 29 H 0.06 1.29 8.01 -2.39 -0.02 1.27 16 30 H 0.08 0.95 7.77 -2.39 -0.02 0.93 16 31 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 34 H 0.07 1.32 7.85 -2.38 -0.02 1.30 16 35 H 0.09 1.44 6.90 -2.39 -0.02 1.42 16 36 H 0.35 10.44 8.58 -89.69 -0.77 9.67 16 37 H 0.35 8.49 9.06 -89.69 -0.81 7.68 16 38 H 0.04 1.64 8.14 -2.39 -0.02 1.63 16 39 H 0.07 2.26 7.16 -2.39 -0.02 2.24 16 40 H 0.06 2.23 8.14 -2.38 -0.02 2.21 16 41 H 0.06 2.45 7.75 -2.39 -0.02 2.43 16 42 H -0.02 -1.20 8.01 -2.39 -0.02 -1.22 16 43 H -0.01 -0.58 8.01 -2.39 -0.02 -0.60 16 44 H 0.25 16.36 7.22 -92.71 -0.67 15.69 16 Total: -1.00 -73.18 346.48 1.70 -71.48 By element: Atomic # 1 Polarization: 25.03 SS G_CDS: -0.51 Total: 24.52 kcal Atomic # 6 Polarization: -31.77 SS G_CDS: 3.78 Total: -27.99 kcal Atomic # 7 Polarization: -97.11 SS G_CDS: -3.57 Total: -100.68 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: -0.05 Total: -20.49 kcal Atomic # 14 Polarization: 51.10 SS G_CDS: 2.05 Total: 53.15 kcal Total: -73.18 1.70 -71.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594432151.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.902 kcal (2) G-P(sol) polarization free energy of solvation -73.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds