Wall clock time and date at job start Mon Mar 30 2020 05:31:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47156 * 2 1 4 4 H 1.08993 * 109.99974 * 304.41800 * 3 2 1 5 5 C 1.54319 * 109.88089 * 65.51452 * 3 2 1 6 6 C 1.55162 * 102.94280 * 141.60811 * 5 3 2 7 7 C 1.54915 * 101.58155 * 324.49850 * 6 5 3 8 8 N 1.47021 * 109.88075 * 183.32106 * 3 2 1 9 9 C 1.34781 * 125.64712 * 61.60942 * 8 3 2 10 10 O 1.21281 * 119.99921 * 354.97693 * 9 8 3 11 11 C 1.50699 * 120.00013 * 174.97472 * 9 8 3 12 12 H 1.09005 * 109.47197 * 39.99914 * 11 9 8 13 13 N 1.46901 * 109.47366 * 159.99936 * 11 9 8 14 14 C 1.52999 * 109.47179 * 280.00204 * 11 9 8 15 15 C 1.53005 * 109.47118 * 174.99851 * 14 11 9 16 16 C 1.52999 * 109.47118 * 180.02562 * 15 14 11 17 17 C 1.50701 * 109.46891 * 180.02562 * 16 15 14 18 18 H 1.08002 * 120.00178 * 359.97438 * 17 16 15 19 19 C 1.37881 * 120.00002 * 180.02562 * 17 16 15 20 20 N 1.31511 * 119.99942 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00204 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47269 * 59.99921 * 21 19 17 23 23 H 1.48501 * 109.47479 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47098 * 299.99844 * 21 19 17 25 25 H 1.08999 * 109.46923 * 184.87248 * 1 2 3 26 26 H 1.08996 * 109.47186 * 304.87510 * 1 2 3 27 27 H 1.09003 * 109.47016 * 64.87990 * 1 2 3 28 28 H 1.09005 * 109.47060 * 240.00167 * 2 1 3 29 29 H 1.09001 * 109.46912 * 120.00863 * 2 1 3 30 30 H 1.09006 * 110.72088 * 23.25014 * 5 3 2 31 31 H 1.08998 * 110.72383 * 259.97423 * 5 3 2 32 32 H 1.08997 * 111.00083 * 82.57442 * 6 5 3 33 33 H 1.08996 * 111.00412 * 206.42576 * 6 5 3 34 34 H 1.08996 * 110.36368 * 155.84315 * 7 6 5 35 35 H 1.08997 * 110.36568 * 278.17168 * 7 6 5 36 36 H 1.00906 * 111.00024 * 296.05192 * 13 11 9 37 37 H 1.00902 * 110.99380 * 60.00062 * 13 11 9 38 38 H 1.08999 * 109.47187 * 295.00033 * 14 11 9 39 39 H 1.09006 * 109.47456 * 55.00349 * 14 11 9 40 40 H 1.08999 * 109.47240 * 300.00150 * 15 14 11 41 41 H 1.09005 * 109.47064 * 60.00048 * 15 14 11 42 42 H 1.09006 * 109.47113 * 299.99787 * 16 15 14 43 43 H 1.08996 * 109.47330 * 59.99938 * 16 15 14 44 44 H 0.96999 * 120.00286 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6185 1.9869 -0.8449 5 6 1.6479 2.1377 1.3207 6 6 2.8944 3.0046 1.6406 7 6 4.0429 2.0967 1.1340 8 7 3.5080 1.4537 -0.0801 9 6 4.2431 0.9577 -1.0951 10 8 3.7004 0.3668 -2.0046 11 6 5.7394 1.1374 -1.0998 12 1 6.1250 1.0005 -0.0895 13 7 6.3490 0.1451 -1.9952 14 6 6.0824 2.5455 -1.5901 15 6 7.5914 2.7714 -1.4771 16 6 7.9344 4.1798 -1.9668 17 6 9.4208 4.4020 -1.8562 18 1 10.0572 3.6173 -1.4743 19 6 9.9682 5.6074 -2.2414 20 7 9.1933 6.5630 -2.7058 21 14 11.8106 5.8831 -2.1036 22 1 12.5245 4.8823 -2.9366 23 1 12.1435 7.2500 -2.5789 24 1 12.2284 5.7360 -0.6862 25 1 -0.3633 -1.0240 0.0873 26 1 -0.3633 0.5876 0.8431 27 1 -0.3633 0.4363 -0.9305 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5140 0.8899 30 1 1.4771 1.4029 2.1075 31 1 0.7677 2.7651 1.1798 32 1 2.8679 3.9450 1.0901 33 1 2.9814 3.1833 2.7122 34 1 4.9206 2.6955 0.8908 35 1 4.2909 1.3451 1.8833 36 1 6.1912 -0.7924 -1.6569 37 1 6.0073 0.2514 -2.9387 38 1 5.7758 2.6527 -2.6305 39 1 5.5583 3.2807 -0.9792 40 1 7.8980 2.6642 -0.4367 41 1 8.1156 2.0363 -2.0880 42 1 7.6277 4.2874 -3.0073 43 1 7.4103 4.9146 -1.3557 44 1 9.5783 7.4112 -2.9765 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594432152.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:49 Heat of formation + Delta-G solvation = -66.450454 kcal Electronic energy + Delta-G solvation = -21051.273410 eV Core-core repulsion = 18002.095406 eV Total energy + Delta-G solvation = -3049.178004 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.48370 -37.98048 -35.69613 -33.73491 -33.24378 -31.70803 -31.32352 -28.31358 -27.68607 -25.45943 -23.92642 -22.65246 -22.00810 -20.64084 -19.97293 -18.93108 -17.32532 -16.55997 -16.28667 -15.76032 -15.22676 -14.83238 -14.55528 -14.41675 -14.03728 -13.71351 -13.63119 -13.20993 -12.98605 -12.56219 -12.36065 -12.31725 -11.84102 -11.74257 -11.58109 -11.44031 -11.27842 -11.12666 -10.94585 -10.76415 -10.69609 -10.57137 -10.39878 -10.08048 -9.58242 -9.20669 -9.03898 -8.72945 -8.52014 -8.27987 -5.93890 -3.95555 2.60370 2.91230 3.37376 3.41351 3.44358 4.22262 4.33504 4.51012 4.58142 4.64897 4.81478 4.89898 4.96893 5.05714 5.16749 5.20201 5.24692 5.41423 5.41908 5.44184 5.48398 5.55220 5.65376 5.72737 5.79900 5.90312 5.94266 6.00481 6.07631 6.15374 6.33609 6.47410 6.83852 7.03292 7.14412 7.26121 7.46712 7.54396 7.76096 7.91990 8.07712 8.13754 8.51051 9.11910 9.68046 11.17543 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.030221 B = 0.003620 C = 0.003394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.295170 B = 7732.552563 C = 8248.221968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.135 4.135 3 C 0.134 3.866 4 H 0.073 0.927 5 C -0.127 4.127 6 C -0.134 4.134 7 C 0.093 3.907 8 N -0.614 5.614 9 C 0.499 3.501 10 O -0.549 6.549 11 C 0.081 3.919 12 H 0.098 0.902 13 N -0.811 5.811 14 C -0.103 4.103 15 C -0.099 4.099 16 C 0.020 3.980 17 C -0.517 4.517 18 H 0.055 0.945 19 C 0.055 3.945 20 N -0.898 5.898 21 Si 0.891 3.109 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.277 1.277 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.077 0.923 29 H 0.059 0.941 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.069 0.931 36 H 0.337 0.663 37 H 0.350 0.650 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.044 0.956 41 H 0.063 0.937 42 H 0.014 0.986 43 H 0.012 0.988 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.687 -10.974 10.112 22.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.173 4.173 3 C 0.031 3.969 4 H 0.091 0.909 5 C -0.165 4.165 6 C -0.172 4.172 7 C -0.030 4.030 8 N -0.348 5.348 9 C 0.287 3.713 10 O -0.426 6.426 11 C -0.035 4.035 12 H 0.116 0.884 13 N -0.340 5.340 14 C -0.141 4.141 15 C -0.137 4.137 16 C -0.017 4.017 17 C -0.555 4.555 18 H 0.073 0.927 19 C -0.145 4.145 20 N -0.538 5.538 21 Si 0.719 3.281 22 H -0.202 1.202 23 H -0.214 1.214 24 H -0.203 1.203 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.096 0.904 29 H 0.078 0.922 30 H 0.095 0.905 31 H 0.099 0.901 32 H 0.098 0.902 33 H 0.103 0.897 34 H 0.106 0.894 35 H 0.087 0.913 36 H 0.149 0.851 37 H 0.164 0.836 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.063 0.937 41 H 0.082 0.918 42 H 0.032 0.968 43 H 0.030 0.970 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -16.194 -10.793 9.651 21.722 hybrid contribution -0.065 -0.043 -0.023 0.081 sum -16.259 -10.836 9.629 21.782 Atomic orbital electron populations 1.21724 0.95298 1.01694 1.01842 1.21890 0.95995 0.96384 1.03026 1.21627 0.80755 0.96394 0.98168 0.90892 1.22734 0.98427 0.98976 0.96402 1.22793 0.93925 0.98516 1.01989 1.22450 0.98074 0.95891 0.86588 1.48721 1.06543 1.59387 1.20195 1.22263 0.91510 0.77307 0.80261 1.90646 1.73725 1.42187 1.36080 1.21740 0.86047 0.96398 0.99311 0.88425 1.59066 1.62206 1.06469 1.06210 1.21645 1.00296 0.91012 1.01131 1.21538 0.91072 1.00579 1.00498 1.19112 0.96119 0.90200 0.96267 1.21249 0.93092 0.99029 1.42160 0.92710 1.25029 0.97841 0.96245 0.95436 1.69958 1.34993 1.04956 1.43844 0.86675 0.85898 0.77117 0.78412 1.20243 1.21388 1.20290 0.92671 0.92597 0.92654 0.90423 0.92183 0.90508 0.90141 0.90193 0.89669 0.89404 0.91312 0.85090 0.83603 0.91980 0.91960 0.93733 0.91830 0.96806 0.96997 0.93063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.82 37.16 0.36 -0.83 16 2 C -0.13 -1.38 5.38 -26.73 -0.14 -1.53 16 3 C 0.13 1.42 2.95 -66.96 -0.20 1.22 16 4 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 5 C -0.13 -0.97 5.45 -24.90 -0.14 -1.10 16 6 C -0.13 -1.05 7.09 -24.58 -0.17 -1.23 16 7 C 0.09 0.90 6.42 -2.53 -0.02 0.88 16 8 N -0.61 -7.42 3.06 -163.02 -0.50 -7.92 16 9 C 0.50 7.29 6.90 -10.98 -0.08 7.22 16 10 O -0.55 -9.47 15.06 5.56 0.08 -9.39 16 11 C 0.08 1.16 2.41 -68.86 -0.17 1.00 16 12 H 0.10 1.29 7.52 -51.93 -0.39 0.90 16 13 N -0.81 -11.62 8.44 -5.65 -0.05 -11.66 16 14 C -0.10 -1.76 4.70 -26.73 -0.13 -1.88 16 15 C -0.10 -2.05 5.04 -26.73 -0.13 -2.18 16 16 C 0.02 0.52 4.97 -27.88 -0.14 0.39 16 17 C -0.52 -14.87 9.11 -34.44 -0.31 -15.18 16 18 H 0.05 1.53 7.74 -52.49 -0.41 1.13 16 19 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 20 N -0.90 -27.37 13.29 55.43 0.74 -26.63 16 21 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.05 0.38 7.27 -51.93 -0.38 0.00 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.08 1.02 6.59 -51.93 -0.34 0.68 16 29 H 0.06 0.59 8.06 -51.93 -0.42 0.17 16 30 H 0.08 0.51 7.79 -51.93 -0.40 0.11 16 31 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.09 0.92 6.27 -51.93 -0.33 0.59 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.34 4.21 9.06 -39.29 -0.36 3.85 16 37 H 0.35 5.20 8.58 -39.29 -0.34 4.86 16 38 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.06 1.02 6.98 -51.93 -0.36 0.66 16 40 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 41 H 0.06 1.36 7.75 -51.93 -0.40 0.96 16 42 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 347.90 15.07 5.24 5.24 Total: -1.00 -32.41 347.90 -8.77 -41.18 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -7.91 Total: 3.97 kcal Atomic # 6 Polarization: -10.36 SS G_CDS: -1.35 Total: -11.72 kcal Atomic # 7 Polarization: -46.41 SS G_CDS: 0.19 Total: -46.22 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: 0.08 Total: -9.39 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.41 -8.77 -41.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594432152.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.267 kcal (2) G-P(sol) polarization free energy of solvation -32.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds