Wall clock time and date at job start Mon Mar 30 2020 04:47:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47254 * 2 1 4 4 C 1.53008 * 109.47129 * 174.80291 * 3 2 1 5 5 H 1.09001 * 109.62592 * 300.48607 * 4 3 2 6 6 C 1.53242 * 109.62462 * 61.07409 * 4 3 2 7 7 N 1.46897 * 109.33691 * 173.54213 * 6 4 3 8 8 C 1.46903 * 111.26574 * 296.88906 * 7 6 4 9 9 C 1.53243 * 109.34109 * 63.10797 * 8 7 6 10 10 N 1.47082 * 109.62444 * 180.09896 * 4 3 2 11 11 C 1.34767 * 120.88568 * 9.12708 * 10 4 3 12 12 O 1.21282 * 120.00158 * 354.86623 * 11 10 4 13 13 C 1.50702 * 120.00143 * 174.85940 * 11 10 4 14 14 C 1.53002 * 109.47386 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47529 * 180.02562 * 14 13 11 16 16 C 1.50694 * 109.47597 * 180.02562 * 15 14 13 17 17 H 1.08012 * 119.99636 * 359.97438 * 16 15 14 18 18 C 1.37868 * 120.00403 * 179.97438 * 16 15 14 19 19 N 1.31518 * 119.99942 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 120.00300 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46747 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47171 * 119.99992 * 20 18 16 23 23 H 1.48505 * 109.47057 * 240.00414 * 20 18 16 24 24 H 1.09006 * 109.46876 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47115 * 299.99519 * 1 2 3 26 26 H 1.09002 * 109.46947 * 59.99982 * 1 2 3 27 27 H 1.09005 * 109.46888 * 240.00085 * 2 1 3 28 28 H 1.09003 * 109.47580 * 120.00425 * 2 1 3 29 29 H 1.09002 * 109.47122 * 54.80438 * 3 2 1 30 30 H 1.08994 * 109.47257 * 294.80694 * 3 2 1 31 31 H 1.09006 * 109.48938 * 293.49295 * 6 4 3 32 32 H 1.08995 * 109.49710 * 53.57682 * 6 4 3 33 33 H 1.00902 * 111.00120 * 172.74294 * 7 6 4 34 34 H 1.08995 * 109.49206 * 303.14477 * 8 7 6 35 35 H 1.09005 * 109.49079 * 183.06659 * 8 7 6 36 36 H 1.09000 * 109.62767 * 65.87530 * 9 8 7 37 37 H 1.09000 * 109.62925 * 186.46032 * 9 8 7 38 38 H 1.08998 * 109.47131 * 300.00151 * 13 11 10 39 39 H 1.09005 * 109.46623 * 60.00266 * 13 11 10 40 40 H 1.09006 * 109.47058 * 300.00713 * 14 13 11 41 41 H 1.09002 * 109.46776 * 59.99771 * 14 13 11 42 42 H 1.09006 * 109.46744 * 300.00207 * 15 14 13 43 43 H 1.09005 * 109.46818 * 59.99878 * 15 14 13 44 44 H 0.96997 * 119.99894 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5645 1.4444 0.1307 5 1 3.8530 0.9509 1.0588 6 6 4.1842 0.7091 -1.0624 7 7 5.6459 0.8473 -1.0131 8 6 6.0529 2.2527 -1.1441 9 6 5.5096 3.0514 0.0456 10 7 4.0583 2.8298 0.1334 11 6 3.2036 3.8687 0.2146 12 8 2.0070 3.6726 0.1929 13 6 3.7349 5.2740 0.3327 14 6 2.5648 6.2569 0.4084 15 6 3.1041 7.6837 0.5276 16 6 1.9517 8.6518 0.6029 17 1 0.9360 8.2859 0.5686 18 6 2.1937 10.0044 0.7154 19 7 3.4304 10.4499 0.7566 20 14 0.7651 11.2045 0.8079 21 1 -0.5155 10.4556 0.7412 22 1 0.8322 11.9563 2.0868 23 1 0.8429 12.1554 -0.3301 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 1.6027 1.9824 0.8398 30 1 1.7546 1.9287 -0.9328 31 1 3.9171 -0.3468 -1.0176 32 1 3.8091 1.1405 -1.9904 33 1 6.0871 0.2758 -1.7180 34 1 5.6518 2.6626 -2.0710 35 1 7.1410 2.3164 -1.1586 36 1 5.9881 2.7113 0.9640 37 1 5.7097 4.1124 -0.1037 38 1 4.3395 5.3592 1.2356 39 1 4.3481 5.5049 -0.5385 40 1 1.9597 6.1718 -0.4943 41 1 1.9520 6.0257 1.2797 42 1 3.7094 7.7691 1.4301 43 1 3.7167 7.9146 -0.3440 44 1 3.6007 11.4016 0.8354 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594437731.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:30 Heat of formation + Delta-G solvation = -45.761360 kcal Electronic energy + Delta-G solvation = -21122.777656 eV Core-core repulsion = 18074.496799 eV Total energy + Delta-G solvation = -3048.280858 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.46663 -37.65594 -35.40034 -34.11077 -33.73862 -32.04553 -31.11192 -28.30704 -27.13340 -25.49608 -24.13460 -22.88655 -21.53776 -21.03290 -19.96412 -18.70013 -16.98196 -16.32168 -15.94026 -15.77825 -15.52429 -15.27258 -14.50707 -14.44282 -14.38135 -13.77704 -13.48222 -13.42860 -12.66938 -12.60942 -12.34933 -12.22579 -11.85136 -11.74738 -11.57512 -11.36568 -11.28721 -11.21537 -10.82285 -10.79789 -10.53466 -10.51914 -10.48484 -9.65485 -9.36089 -9.08008 -9.00101 -8.73482 -8.38369 -8.31205 -5.96792 -3.98006 2.91815 3.01719 3.34263 3.41526 3.47381 3.87736 4.49414 4.57139 4.73350 4.80553 4.93335 5.01512 5.07128 5.12389 5.18705 5.22276 5.39384 5.39423 5.49045 5.57702 5.61152 5.70868 5.74032 5.75242 5.82692 5.86834 5.92784 6.15312 6.26604 6.36362 6.43004 6.58671 6.74546 6.78573 6.95349 6.98624 7.17906 7.55164 7.72538 7.85167 8.04168 8.47174 8.48655 9.09343 9.66026 11.14781 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.022913 B = 0.003896 C = 0.003389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.694904 B = 7185.882243 C = 8260.744363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.131 4.131 3 C -0.110 4.110 4 C 0.152 3.848 5 H 0.073 0.927 6 C 0.046 3.954 7 N -0.690 5.690 8 C 0.041 3.959 9 C 0.111 3.889 10 N -0.621 5.621 11 C 0.514 3.486 12 O -0.529 6.529 13 C -0.139 4.139 14 C -0.094 4.094 15 C 0.020 3.980 16 C -0.516 4.516 17 H 0.056 0.944 18 C 0.055 3.945 19 N -0.898 5.898 20 Si 0.891 3.109 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.284 1.284 24 H 0.048 0.952 25 H 0.055 0.945 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.095 0.905 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.035 0.965 33 H 0.344 0.656 34 H 0.037 0.963 35 H 0.087 0.913 36 H 0.074 0.926 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.053 0.947 41 H 0.054 0.946 42 H 0.015 0.985 43 H 0.015 0.985 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.216 -21.943 -3.471 22.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.169 4.169 3 C -0.148 4.148 4 C 0.048 3.952 5 H 0.091 0.909 6 C -0.084 4.084 7 N -0.321 5.321 8 C -0.089 4.089 9 C -0.013 4.013 10 N -0.357 5.357 11 C 0.305 3.695 12 O -0.405 6.405 13 C -0.179 4.179 14 C -0.132 4.132 15 C -0.017 4.017 16 C -0.555 4.555 17 H 0.075 0.925 18 C -0.145 4.145 19 N -0.538 5.538 20 Si 0.719 3.281 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.211 1.211 24 H 0.068 0.932 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.114 0.886 30 H 0.089 0.911 31 H 0.103 0.897 32 H 0.054 0.946 33 H 0.161 0.839 34 H 0.055 0.945 35 H 0.105 0.895 36 H 0.092 0.908 37 H 0.112 0.888 38 H 0.105 0.895 39 H 0.103 0.897 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.034 0.966 43 H 0.033 0.967 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.685 -21.856 -2.784 22.525 hybrid contribution -0.590 0.850 -0.962 1.413 sum 4.095 -21.006 -3.746 21.727 Atomic orbital electron populations 1.21706 0.95743 1.00904 1.02214 1.21722 0.96289 0.97743 1.01189 1.22198 0.92156 0.94979 1.05465 1.21358 0.94771 0.81415 0.97654 0.90865 1.22460 0.87545 1.00828 0.97602 1.60277 1.07986 1.08859 1.55012 1.22341 1.00603 0.88554 0.97397 1.21832 0.80169 1.00785 0.98504 1.48327 1.06796 1.05874 1.74668 1.21228 0.86444 0.87097 0.74758 1.90692 1.15713 1.84879 1.49220 1.21903 1.01819 0.90904 1.03259 1.21440 0.94864 0.95295 1.01570 1.19134 0.96418 0.89130 0.97009 1.21311 0.93203 0.91423 1.49526 0.92547 1.25018 0.95564 0.98506 0.95435 1.69974 1.18685 1.14010 1.51100 0.86547 0.82892 0.81126 0.77538 1.19684 1.21037 1.21053 0.93241 0.92586 0.92776 0.92657 0.92389 0.88649 0.91073 0.89725 0.94644 0.83866 0.94508 0.89470 0.90777 0.88751 0.89482 0.89695 0.92799 0.92709 0.96628 0.96689 0.93145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.91 37.16 0.37 -1.13 16 2 C -0.13 -1.32 5.47 -26.74 -0.15 -1.47 16 3 C -0.11 -1.42 3.16 -26.73 -0.08 -1.50 16 4 C 0.15 1.80 3.16 -67.48 -0.21 1.58 16 5 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 6 C 0.05 0.44 5.47 -3.70 -0.02 0.42 16 7 N -0.69 -6.01 6.82 -113.50 -0.77 -6.78 16 8 C 0.04 0.36 6.70 -3.70 -0.02 0.34 16 9 C 0.11 1.14 6.48 -3.60 -0.02 1.12 16 10 N -0.62 -8.18 3.01 -164.92 -0.50 -8.68 16 11 C 0.51 8.47 7.62 -10.99 -0.08 8.38 16 12 O -0.53 -10.14 11.49 5.56 0.06 -10.07 16 13 C -0.14 -2.35 4.14 -27.88 -0.12 -2.47 16 14 C -0.09 -2.04 4.44 -26.73 -0.12 -2.16 16 15 C 0.02 0.53 4.97 -27.89 -0.14 0.39 16 16 C -0.52 -15.03 9.11 -34.45 -0.31 -15.34 16 17 H 0.06 1.63 7.74 -52.48 -0.41 1.22 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 19 N -0.90 -27.19 13.29 55.43 0.74 -26.45 16 20 Si 0.89 22.11 29.54 -169.99 -5.02 17.09 16 21 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 24 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.49 6.91 -51.93 -0.36 0.13 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.10 1.49 6.28 -51.93 -0.33 1.17 16 30 H 0.07 1.07 7.24 -51.93 -0.38 0.69 16 31 H 0.08 0.69 6.96 -51.93 -0.36 0.33 16 32 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.34 2.30 8.90 -39.29 -0.35 1.95 16 34 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.09 0.93 6.04 -51.93 -0.31 0.62 16 38 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 39 H 0.08 1.32 7.45 -51.93 -0.39 0.93 16 40 H 0.05 1.22 8.10 -51.93 -0.42 0.80 16 41 H 0.05 1.24 8.10 -51.93 -0.42 0.82 16 42 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 341.29 15.07 5.14 5.14 Total: -1.00 -32.28 341.29 -9.29 -41.57 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -7.93 Total: -1.50 kcal Atomic # 6 Polarization: -9.31 SS G_CDS: -1.01 Total: -10.32 kcal Atomic # 7 Polarization: -41.37 SS G_CDS: -0.53 Total: -41.91 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: 0.06 Total: -10.07 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.28 -9.29 -41.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594437731.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.194 kcal (2) G-P(sol) polarization free energy of solvation -32.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds