Wall clock time and date at job start Mon Mar 30 2020 05:37:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47234 * 2 1 4 4 H 1.09000 * 109.49985 * 55.05769 * 3 2 1 5 5 C 1.53201 * 109.49487 * 294.99922 * 3 2 1 6 6 N 1.46920 * 108.77364 * 185.37784 * 5 3 2 7 7 C 1.34777 * 120.63268 * 233.58247 * 6 5 3 8 8 O 1.21278 * 119.99854 * 0.02562 * 7 6 5 9 9 C 1.50703 * 120.00161 * 180.02562 * 7 6 5 10 10 C 1.53000 * 109.46912 * 180.02562 * 9 7 6 11 11 C 1.53001 * 109.46886 * 180.02562 * 10 9 7 12 12 C 1.50697 * 109.47291 * 179.97438 * 11 10 9 13 13 H 1.08006 * 119.99920 * 359.97438 * 12 11 10 14 14 C 1.37876 * 120.00428 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99563 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00432 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47116 * 59.99479 * 16 14 12 18 18 H 1.48490 * 109.47381 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.46756 * 300.00079 * 16 14 12 20 20 C 1.46927 * 118.74032 * 53.86485 * 6 5 3 21 21 C 1.53627 * 108.54183 * 306.09058 * 20 6 5 22 22 C 1.53040 * 109.24108 * 54.85576 * 21 20 6 23 23 H 1.08995 * 109.46070 * 178.49571 * 22 21 20 24 24 N 1.46894 * 109.46221 * 58.53234 * 22 21 20 25 25 H 1.08999 * 109.46883 * 299.99791 * 1 2 3 26 26 H 1.08998 * 109.46601 * 60.00087 * 1 2 3 27 27 H 1.08999 * 109.46767 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47372 * 239.99614 * 2 1 3 29 29 H 1.09001 * 109.47324 * 119.99829 * 2 1 3 30 30 H 1.09001 * 109.58322 * 65.59059 * 5 3 2 31 31 H 1.09001 * 109.70341 * 305.23633 * 5 3 2 32 32 H 1.09002 * 109.47152 * 60.00245 * 9 7 6 33 33 H 1.09001 * 109.46980 * 300.00345 * 9 7 6 34 34 H 1.09001 * 109.47194 * 299.99742 * 10 9 7 35 35 H 1.08992 * 109.47399 * 59.99914 * 10 9 7 36 36 H 1.09001 * 109.47109 * 299.99380 * 11 10 9 37 37 H 1.09002 * 109.47508 * 59.99571 * 11 10 9 38 38 H 0.97000 * 119.99425 * 180.02562 * 15 14 12 39 39 H 1.09005 * 109.58858 * 65.92197 * 20 6 5 40 40 H 1.08995 * 109.58867 * 186.34993 * 20 6 5 41 41 H 1.08999 * 109.63425 * 294.86802 * 21 20 6 42 42 H 1.08997 * 109.46146 * 174.73964 * 21 20 6 43 43 H 1.00901 * 110.99825 * 59.93168 * 24 22 21 44 44 H 1.00903 * 111.00531 * 183.88791 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6065 1.9817 0.8423 5 6 1.6350 2.1280 -1.3089 6 7 2.2408 3.4659 -1.3491 7 6 1.4804 4.5578 -1.5636 8 8 0.2841 4.4414 -1.7253 9 6 2.1168 5.9234 -1.6026 10 6 1.0406 6.9803 -1.8587 11 6 1.6867 8.3666 -1.8990 12 6 0.6269 9.4077 -2.1519 13 1 -0.4044 9.1102 -2.2723 14 6 0.9737 10.7398 -2.2295 15 7 2.2294 11.1021 -2.0823 16 14 -0.3401 12.0304 -2.5423 17 1 -1.3480 11.9849 -1.4526 18 1 0.2870 13.3758 -2.5814 19 1 -1.0038 11.7561 -3.8421 20 6 3.6922 3.5903 -1.1572 21 6 4.0733 2.8890 0.1554 22 6 3.5656 1.4457 0.1220 23 1 3.8574 0.9367 1.0406 24 7 4.1502 0.7478 -1.0308 25 1 -0.3633 0.5138 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 0.5496 2.2167 -1.3542 31 1 1.9893 1.5408 -2.1562 32 1 2.8569 5.9566 -2.4022 33 1 2.6036 6.1247 -0.6483 34 1 0.5535 6.7791 -2.8129 35 1 0.3009 6.9469 -1.0590 36 1 2.1741 8.5681 -0.9450 37 1 2.4263 8.3998 -2.6990 38 1 2.4733 12.0393 -2.1365 39 1 4.2128 3.1191 -1.9910 40 1 3.9645 4.6443 -1.1024 41 1 3.6207 3.4145 0.9963 42 1 5.1576 2.8907 0.2665 43 1 5.1575 0.7362 -0.9737 44 1 3.7818 -0.1881 -1.1119 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594440836.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:19 Heat of formation + Delta-G solvation = -88.307903 kcal Electronic energy + Delta-G solvation = -21025.038768 eV Core-core repulsion = 17974.912954 eV Total energy + Delta-G solvation = -3050.125814 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.35856 -39.29111 -36.15195 -35.73433 -34.46333 -33.99434 -30.93914 -30.49487 -29.17037 -26.53959 -25.19183 -24.96861 -22.36303 -22.15830 -20.66938 -19.56410 -18.47921 -17.98872 -17.11851 -16.82171 -16.72070 -16.47928 -16.18471 -15.32160 -15.05453 -14.87480 -14.54536 -14.26374 -14.16858 -13.99587 -13.77579 -13.52813 -13.16039 -13.03914 -12.83812 -12.60855 -12.56719 -12.47520 -12.37865 -12.02956 -11.63557 -11.56973 -11.56629 -11.44472 -11.26881 -11.14047 -10.64658 -10.53938 -9.81071 -9.25633 -8.19946 -6.30100 1.39470 1.42715 1.50824 1.65111 2.09079 2.42106 3.12733 3.56189 3.64591 3.75935 3.86167 3.97703 4.16432 4.19863 4.23798 4.28455 4.38827 4.45069 4.50976 4.64680 4.73282 4.79199 4.85535 4.91575 4.94320 4.95710 5.04656 5.07750 5.12076 5.13089 5.18507 5.26293 5.37708 5.44155 5.52934 5.68132 5.74780 5.86086 6.27278 6.33337 6.46990 6.72628 6.84617 7.22801 7.38353 8.91493 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.034906 B = 0.003401 C = 0.003179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.964368 B = 8229.922990 C = 8806.094015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.109 4.109 3 C -0.093 4.093 4 H 0.059 0.941 5 C 0.126 3.874 6 N -0.606 5.606 7 C 0.510 3.490 8 O -0.590 6.590 9 C -0.126 4.126 10 C -0.081 4.081 11 C 0.028 3.972 12 C -0.550 4.550 13 H 0.050 0.950 14 C 0.004 3.996 15 N -0.929 5.929 16 Si 0.962 3.038 17 H -0.269 1.269 18 H -0.277 1.277 19 H -0.269 1.269 20 C 0.110 3.890 21 C -0.128 4.128 22 C 0.103 3.897 23 H 0.050 0.950 24 N -0.847 5.847 25 H 0.046 0.954 26 H 0.043 0.957 27 H 0.067 0.933 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.059 0.941 31 H 0.079 0.921 32 H 0.104 0.896 33 H 0.104 0.896 34 H 0.038 0.962 35 H 0.038 0.962 36 H 0.001 0.999 37 H 0.001 0.999 38 H 0.265 0.735 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.062 0.938 42 H 0.097 0.903 43 H 0.351 0.649 44 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.404 -25.480 5.756 27.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.147 4.147 3 C -0.113 4.113 4 H 0.077 0.923 5 C 0.004 3.996 6 N -0.338 5.338 7 C 0.300 3.700 8 O -0.471 6.471 9 C -0.166 4.166 10 C -0.119 4.119 11 C -0.009 4.009 12 C -0.588 4.588 13 H 0.069 0.931 14 C -0.194 4.194 15 N -0.569 5.569 16 Si 0.787 3.213 17 H -0.194 1.194 18 H -0.202 1.202 19 H -0.195 1.195 20 C -0.012 4.012 21 C -0.166 4.166 22 C -0.009 4.009 23 H 0.068 0.932 24 N -0.380 5.380 25 H 0.065 0.935 26 H 0.062 0.938 27 H 0.086 0.914 28 H 0.097 0.903 29 H 0.095 0.905 30 H 0.077 0.923 31 H 0.097 0.903 32 H 0.122 0.878 33 H 0.122 0.878 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.020 0.980 37 H 0.019 0.981 38 H 0.074 0.926 39 H 0.106 0.894 40 H 0.103 0.897 41 H 0.081 0.919 42 H 0.115 0.885 43 H 0.165 0.835 44 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 6.571 -24.832 5.242 26.216 hybrid contribution -0.375 0.366 0.533 0.748 sum 6.195 -24.466 5.775 25.890 Atomic orbital electron populations 1.21827 0.96313 1.02061 1.01258 1.21488 0.95624 0.94536 1.03093 1.21564 0.95904 0.97030 0.96760 0.92262 1.21542 0.97583 0.81967 0.98531 1.48190 1.09169 1.06057 1.70408 1.21123 0.86528 0.87325 0.75055 1.90628 1.17156 1.87322 1.51992 1.21670 0.99739 0.90265 1.04922 1.21162 0.96739 0.94115 0.99922 1.18998 0.95134 0.91260 0.95504 1.21664 0.94859 0.92978 1.49292 0.93141 1.25909 0.97770 1.00890 0.94849 1.70062 1.18252 1.17565 1.51000 0.85547 0.78998 0.77723 0.79072 1.19430 1.20218 1.19451 1.21942 0.78362 1.01818 0.99061 1.22044 1.02462 0.95230 0.96888 1.21185 0.92737 0.94373 0.92583 0.93199 1.58679 1.11884 1.23587 1.43888 0.93519 0.93807 0.91372 0.90330 0.90512 0.92283 0.90324 0.87781 0.87766 0.94283 0.94275 0.98040 0.98055 0.92611 0.89399 0.89654 0.91909 0.88491 0.83513 0.83759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.46 9.67 71.98 0.70 -1.76 16 2 C -0.11 -1.39 4.97 30.59 0.15 -1.24 16 3 C -0.09 -1.59 2.16 -10.71 -0.02 -1.61 16 4 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 5 C 0.13 2.99 5.06 86.37 0.44 3.42 16 6 N -0.61 -16.13 2.97 -818.05 -2.43 -18.56 16 7 C 0.51 18.12 7.70 87.66 0.67 18.80 16 8 O -0.59 -26.05 15.39 -3.02 -0.05 -26.10 16 9 C -0.13 -4.48 4.05 29.85 0.12 -4.36 16 10 C -0.08 -3.77 4.44 30.59 0.14 -3.64 16 11 C 0.03 1.53 4.97 29.85 0.15 1.68 16 12 C -0.55 -33.12 9.11 25.60 0.23 -32.89 16 13 H 0.05 3.01 7.74 -2.91 -0.02 2.98 16 14 C 0.00 0.23 5.46 84.65 0.46 0.69 16 15 N -0.93 -57.06 13.29 21.45 0.28 -56.77 16 16 Si 0.96 45.85 29.54 68.60 2.03 47.87 16 17 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 18 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 19 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 20 C 0.11 2.12 6.11 86.51 0.53 2.65 16 21 C -0.13 -1.85 5.79 30.82 0.18 -1.67 16 22 C 0.10 1.30 3.07 44.94 0.14 1.44 16 23 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 24 N -0.85 -8.32 7.78 -168.58 -1.31 -9.63 16 25 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.04 0.83 6.70 -2.39 -0.02 0.81 16 27 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.08 0.83 6.85 -2.39 -0.02 0.82 16 29 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.06 1.74 5.72 -2.39 -0.01 1.72 16 31 H 0.08 1.75 7.74 -2.39 -0.02 1.74 16 32 H 0.10 3.32 7.93 -2.39 -0.02 3.30 16 33 H 0.10 3.30 7.70 -2.39 -0.02 3.28 16 34 H 0.04 1.90 8.10 -2.39 -0.02 1.88 16 35 H 0.04 1.90 8.10 -2.39 -0.02 1.88 16 36 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 37 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 38 H 0.27 15.24 8.31 -92.71 -0.77 14.46 16 39 H 0.09 1.57 7.73 -2.38 -0.02 1.55 16 40 H 0.09 1.65 5.93 -2.39 -0.01 1.64 16 41 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.10 0.98 8.14 -2.39 -0.02 0.97 16 43 H 0.35 2.35 9.04 -89.69 -0.81 1.54 16 44 H 0.35 2.68 7.20 -89.69 -0.65 2.03 16 Total: -1.00 -73.23 340.92 1.93 -71.30 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -0.48 Total: 10.37 kcal Atomic # 6 Polarization: -22.36 SS G_CDS: 3.88 Total: -18.48 kcal Atomic # 7 Polarization: -81.51 SS G_CDS: -3.45 Total: -84.96 kcal Atomic # 8 Polarization: -26.05 SS G_CDS: -0.05 Total: -26.10 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.87 kcal Total: -73.23 1.93 -71.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594440836.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.010 kcal (2) G-P(sol) polarization free energy of solvation -73.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds