Wall clock time and date at job start Mon Mar 30 2020 05:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 H 1.09004 * 109.49475 * 304.99600 * 3 2 1 5 5 C 1.53184 * 109.49889 * 65.06522 * 3 2 1 6 6 N 1.46936 * 108.77004 * 174.55532 * 5 3 2 7 7 C 1.34774 * 120.60847 * 126.42237 * 6 5 3 8 8 O 1.21284 * 119.99653 * 0.02562 * 7 6 5 9 9 C 1.50699 * 120.00248 * 180.02562 * 7 6 5 10 10 C 1.53001 * 109.47134 * 179.97438 * 9 7 6 11 11 C 1.53004 * 109.47030 * 179.97438 * 10 9 7 12 12 C 1.50700 * 109.46775 * 180.02562 * 11 10 9 13 13 H 1.07998 * 120.00303 * 0.02562 * 12 11 10 14 14 C 1.37876 * 119.99777 * 180.02562 * 12 11 10 15 15 N 1.31514 * 120.00025 * 179.97438 * 14 12 11 16 16 Si 1.86804 * 120.00129 * 359.97438 * 14 12 11 17 17 H 1.48506 * 109.47138 * 89.99728 * 16 14 12 18 18 H 1.48494 * 109.47148 * 210.00332 * 16 14 12 19 19 H 1.48508 * 109.46740 * 330.00343 * 16 14 12 20 20 C 1.46933 * 118.76164 * 306.43864 * 6 5 3 21 21 C 1.53188 * 108.77433 * 53.59569 * 20 6 5 22 22 C 1.53043 * 109.49562 * 184.93617 * 3 2 1 23 23 H 1.09002 * 109.46355 * 58.67358 * 22 3 2 24 24 N 1.46901 * 109.45790 * 298.70118 * 22 3 2 25 25 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 26 26 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 27 27 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 29 29 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 30 30 H 1.09003 * 109.58981 * 294.36864 * 5 3 2 31 31 H 1.08997 * 109.59324 * 54.79976 * 5 3 2 32 32 H 1.09001 * 109.46824 * 299.99944 * 9 7 6 33 33 H 1.09000 * 109.47035 * 60.00063 * 9 7 6 34 34 H 1.08994 * 109.47118 * 300.00077 * 10 9 7 35 35 H 1.09000 * 109.46950 * 60.00204 * 10 9 7 36 36 H 1.08994 * 109.47490 * 300.00163 * 11 10 9 37 37 H 1.09000 * 109.46831 * 60.00445 * 11 10 9 38 38 H 0.97003 * 119.99811 * 180.02562 * 15 14 12 39 39 H 1.08994 * 109.58789 * 293.80016 * 20 6 5 40 40 H 1.09000 * 109.69771 * 173.44783 * 20 6 5 41 41 H 1.08995 * 109.49610 * 185.41223 * 21 20 6 42 42 H 1.09001 * 109.52716 * 65.32859 * 21 20 6 43 43 H 1.00903 * 110.99596 * 179.97438 * 24 22 3 44 44 H 1.00892 * 111.00215 * 303.95074 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6056 1.9819 -0.8418 5 6 1.6364 2.1275 1.3094 6 7 2.2437 3.4649 1.3500 7 6 1.4841 4.5571 1.5657 8 8 0.2879 4.4413 1.7290 9 6 2.1211 5.9224 1.6041 10 6 1.0458 6.9798 1.8618 11 6 1.6926 8.3658 1.9014 12 6 0.6335 9.4072 2.1559 13 1 -0.3977 9.1103 2.2777 14 6 0.9810 10.7393 2.2333 15 7 0.0567 11.6482 2.4549 16 14 2.7647 11.2529 2.0234 17 1 3.0370 11.5214 0.5884 18 1 3.0221 12.4828 2.8147 19 1 3.6532 10.1626 2.5001 20 6 3.6941 3.5892 1.1507 21 6 4.0739 2.8881 -0.1573 22 6 3.5653 1.4450 -0.1241 23 1 3.8557 0.9366 -1.0436 24 7 4.1512 0.7460 1.0275 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3635 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 0.5511 2.2170 1.3557 31 1 1.9930 1.5390 2.1547 32 1 2.8623 5.9551 2.4027 33 1 2.6066 6.1237 0.6492 34 1 0.3049 6.9468 1.0631 35 1 0.5599 6.7786 2.8166 36 1 2.4332 8.3985 2.7004 37 1 2.1788 8.5672 0.9469 38 1 0.3012 12.5853 2.5090 39 1 4.2188 3.1197 1.9827 40 1 3.9682 4.6426 1.0935 41 1 5.1580 2.8893 -0.2692 42 1 3.6208 3.4142 -0.9976 43 1 5.1584 0.7336 0.9688 44 1 3.8444 1.1589 1.8954 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594440837.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:23 Heat of formation + Delta-G solvation = -62.681772 kcal Electronic energy + Delta-G solvation = -21114.618151 eV Core-core repulsion = 18065.603569 eV Total energy + Delta-G solvation = -3049.014582 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.57623 -38.38632 -34.82969 -34.35026 -33.83586 -32.08625 -30.23199 -29.39429 -28.15993 -25.54480 -24.46787 -23.30204 -21.56315 -20.38591 -19.71781 -18.65868 -17.28400 -16.69088 -16.32111 -15.96710 -15.74684 -14.92752 -14.64237 -14.34862 -14.22397 -13.98757 -13.60863 -13.36773 -13.09010 -12.91305 -12.60812 -12.37915 -11.99075 -11.91544 -11.79360 -11.66541 -11.49367 -10.97093 -10.91547 -10.87335 -10.79348 -10.58821 -9.99607 -9.81736 -9.70061 -9.40587 -9.13304 -9.04956 -8.66768 -8.51281 -6.00808 -3.98564 2.80685 2.94856 3.30736 3.37815 3.40517 4.18257 4.26306 4.46612 4.47211 4.64302 4.68506 4.77444 4.87048 5.03751 5.13488 5.14187 5.29632 5.32251 5.32462 5.45357 5.53187 5.54224 5.59385 5.64640 5.69392 5.79337 5.80377 5.88282 6.06599 6.11244 6.20074 6.45562 6.55510 6.69232 6.78563 6.91706 7.06723 7.34326 7.41205 7.45279 7.82464 8.33666 8.59336 9.06079 9.61164 11.12945 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.032230 B = 0.003670 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.543027 B = 7628.337880 C = 8264.146028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.105 4.105 3 C -0.095 4.095 4 H 0.076 0.924 5 C 0.112 3.888 6 N -0.622 5.622 7 C 0.515 3.485 8 O -0.533 6.533 9 C -0.140 4.140 10 C -0.087 4.087 11 C -0.014 4.014 12 C -0.519 4.519 13 H 0.073 0.927 14 C 0.064 3.936 15 N -0.904 5.904 16 Si 0.881 3.119 17 H -0.278 1.278 18 H -0.288 1.288 19 H -0.266 1.266 20 C 0.105 3.895 21 C -0.173 4.173 22 C 0.096 3.904 23 H 0.082 0.918 24 N -0.842 5.842 25 H 0.057 0.943 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.095 0.905 31 H 0.066 0.934 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.015 0.985 37 H 0.010 0.990 38 H 0.262 0.738 39 H 0.063 0.937 40 H 0.092 0.908 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.339 0.661 44 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.257 -24.019 -5.359 27.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.143 4.143 3 C -0.115 4.115 4 H 0.094 0.906 5 C -0.011 4.011 6 N -0.357 5.357 7 C 0.305 3.695 8 O -0.408 6.408 9 C -0.180 4.180 10 C -0.125 4.125 11 C -0.051 4.051 12 C -0.557 4.557 13 H 0.091 0.909 14 C -0.137 4.137 15 N -0.544 5.544 16 Si 0.709 3.291 17 H -0.204 1.204 18 H -0.214 1.214 19 H -0.191 1.191 20 C -0.018 4.018 21 C -0.213 4.213 22 C -0.016 4.016 23 H 0.100 0.900 24 N -0.373 5.373 25 H 0.076 0.924 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.092 0.908 30 H 0.113 0.887 31 H 0.084 0.916 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.033 0.967 37 H 0.028 0.972 38 H 0.072 0.928 39 H 0.081 0.919 40 H 0.111 0.889 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.152 0.848 44 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 10.163 -24.513 -5.493 27.099 hybrid contribution 1.532 1.394 0.012 2.071 sum 11.695 -23.119 -5.481 26.482 Atomic orbital electron populations 1.21880 0.96129 1.01486 1.02132 1.21379 0.95104 0.95062 1.02772 1.21585 0.94408 0.96989 0.98494 0.90562 1.21663 1.00461 0.82193 0.96737 1.48235 1.07716 1.06811 1.72974 1.21178 0.87030 0.86350 0.74949 1.90684 1.15060 1.86488 1.48583 1.21892 1.01210 0.91602 1.03297 1.21277 0.95886 0.93199 1.02188 1.19601 0.96822 0.92666 0.96025 1.21164 0.95416 0.90422 1.48659 0.90925 1.25055 0.97217 0.96649 0.94732 1.69926 1.33028 1.01172 1.50232 0.86761 0.85992 0.78073 0.78310 1.20354 1.21425 1.19084 1.21685 0.80884 1.02427 0.96850 1.22751 1.01480 0.98344 0.98739 1.21436 0.94263 0.91154 0.94726 0.89966 1.58961 1.13487 1.59892 1.04921 0.92431 0.92874 0.92829 0.92072 0.90814 0.88651 0.91631 0.89504 0.89524 0.92108 0.92061 0.96708 0.97161 0.92789 0.91906 0.88937 0.90689 0.90672 0.84797 0.84525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.33 9.67 37.16 0.36 -0.98 16 2 C -0.11 -0.84 5.19 -26.73 -0.14 -0.98 16 3 C -0.10 -0.83 2.16 -90.50 -0.20 -1.03 16 4 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 5 C 0.11 1.20 4.88 -3.71 -0.02 1.18 16 6 N -0.62 -7.33 2.97 -172.76 -0.51 -7.84 16 7 C 0.52 8.20 7.70 -10.99 -0.08 8.12 16 8 O -0.53 -10.62 15.39 5.55 0.09 -10.54 16 9 C -0.14 -2.21 4.05 -27.88 -0.11 -2.32 16 10 C -0.09 -1.84 4.44 -26.73 -0.12 -1.96 16 11 C -0.01 -0.33 4.04 -27.88 -0.11 -0.44 16 12 C -0.52 -15.24 9.66 -34.44 -0.33 -15.57 16 13 H 0.07 2.32 7.99 -52.49 -0.42 1.90 16 14 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 15 N -0.90 -28.48 13.96 55.43 0.77 -27.70 16 16 Si 0.88 21.78 27.47 -169.99 -4.67 17.11 16 17 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 19 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 20 C 0.11 0.90 5.90 -3.71 -0.02 0.87 16 21 C -0.17 -1.23 5.77 -26.61 -0.15 -1.39 16 22 C 0.10 0.69 3.12 -67.67 -0.21 0.48 16 23 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 24 N -0.84 -5.37 8.48 -4.63 -0.04 -5.41 16 25 H 0.06 0.53 6.70 -51.93 -0.35 0.18 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.61 7.80 -51.93 -0.40 0.21 16 30 H 0.10 1.24 5.73 -51.93 -0.30 0.94 16 31 H 0.07 0.64 6.83 -51.93 -0.35 0.28 16 32 H 0.09 1.21 7.94 -51.93 -0.41 0.80 16 33 H 0.09 1.21 7.70 -51.93 -0.40 0.81 16 34 H 0.06 1.35 8.10 -51.93 -0.42 0.93 16 35 H 0.06 1.36 8.10 -51.93 -0.42 0.94 16 36 H 0.01 0.35 7.20 -51.93 -0.37 -0.03 16 37 H 0.01 0.24 7.57 -51.93 -0.39 -0.16 16 38 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 39 H 0.06 0.45 7.02 -51.93 -0.36 0.08 16 40 H 0.09 0.79 5.95 -51.93 -0.31 0.48 16 41 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.34 1.68 9.04 -39.29 -0.36 1.33 16 44 H 0.34 2.29 5.60 -39.30 -0.22 2.07 16 LS Contribution 335.63 15.07 5.06 5.06 Total: -1.00 -33.30 335.63 -8.16 -41.47 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -7.62 Total: 0.06 kcal Atomic # 6 Polarization: -10.97 SS G_CDS: -1.24 Total: -12.21 kcal Atomic # 7 Polarization: -41.17 SS G_CDS: 0.22 Total: -40.95 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: 0.09 Total: -10.54 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.67 Total: 17.11 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.30 -8.16 -41.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594440837.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.217 kcal (2) G-P(sol) polarization free energy of solvation -33.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds