Wall clock time and date at job start Mon Mar 30 2020 05:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 H 1.09004 * 109.49475 * 304.99600 * 3 2 1 5 5 C 1.53184 * 109.49889 * 65.06522 * 3 2 1 6 6 N 1.46936 * 108.77004 * 174.55532 * 5 3 2 7 7 C 1.34774 * 120.60847 * 126.42237 * 6 5 3 8 8 O 1.21284 * 119.99653 * 0.02562 * 7 6 5 9 9 C 1.50699 * 120.00248 * 180.02562 * 7 6 5 10 10 C 1.53001 * 109.47134 * 179.97438 * 9 7 6 11 11 C 1.53004 * 109.47030 * 179.97438 * 10 9 7 12 12 C 1.50700 * 109.46775 * 180.02562 * 11 10 9 13 13 H 1.07998 * 120.00303 * 0.02562 * 12 11 10 14 14 C 1.37876 * 119.99777 * 180.02562 * 12 11 10 15 15 N 1.31514 * 120.00025 * 179.97438 * 14 12 11 16 16 Si 1.86804 * 120.00129 * 359.97438 * 14 12 11 17 17 H 1.48506 * 109.47138 * 89.99728 * 16 14 12 18 18 H 1.48494 * 109.47148 * 210.00332 * 16 14 12 19 19 H 1.48508 * 109.46740 * 330.00343 * 16 14 12 20 20 C 1.46933 * 118.76164 * 306.43864 * 6 5 3 21 21 C 1.53188 * 108.77433 * 53.59569 * 20 6 5 22 22 C 1.53043 * 109.49562 * 184.93617 * 3 2 1 23 23 H 1.09002 * 109.46355 * 58.67358 * 22 3 2 24 24 N 1.46901 * 109.45790 * 298.70118 * 22 3 2 25 25 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 26 26 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 27 27 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 29 29 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 30 30 H 1.09003 * 109.58981 * 294.36864 * 5 3 2 31 31 H 1.08997 * 109.59324 * 54.79976 * 5 3 2 32 32 H 1.09001 * 109.46824 * 299.99944 * 9 7 6 33 33 H 1.09000 * 109.47035 * 60.00063 * 9 7 6 34 34 H 1.08994 * 109.47118 * 300.00077 * 10 9 7 35 35 H 1.09000 * 109.46950 * 60.00204 * 10 9 7 36 36 H 1.08994 * 109.47490 * 300.00163 * 11 10 9 37 37 H 1.09000 * 109.46831 * 60.00445 * 11 10 9 38 38 H 0.97003 * 119.99811 * 180.02562 * 15 14 12 39 39 H 1.08994 * 109.58789 * 293.80016 * 20 6 5 40 40 H 1.09000 * 109.69771 * 173.44783 * 20 6 5 41 41 H 1.08995 * 109.49610 * 185.41223 * 21 20 6 42 42 H 1.09001 * 109.52716 * 65.32859 * 21 20 6 43 43 H 1.00903 * 110.99596 * 179.97438 * 24 22 3 44 44 H 1.00892 * 111.00215 * 303.95074 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6056 1.9819 -0.8418 5 6 1.6364 2.1275 1.3094 6 7 2.2437 3.4649 1.3500 7 6 1.4841 4.5571 1.5657 8 8 0.2879 4.4413 1.7290 9 6 2.1211 5.9224 1.6041 10 6 1.0458 6.9798 1.8618 11 6 1.6926 8.3658 1.9014 12 6 0.6335 9.4072 2.1559 13 1 -0.3977 9.1103 2.2777 14 6 0.9810 10.7393 2.2333 15 7 0.0567 11.6482 2.4549 16 14 2.7647 11.2529 2.0234 17 1 3.0370 11.5214 0.5884 18 1 3.0221 12.4828 2.8147 19 1 3.6532 10.1626 2.5001 20 6 3.6941 3.5892 1.1507 21 6 4.0739 2.8881 -0.1573 22 6 3.5653 1.4450 -0.1241 23 1 3.8557 0.9366 -1.0436 24 7 4.1512 0.7460 1.0275 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3635 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 0.5511 2.2170 1.3557 31 1 1.9930 1.5390 2.1547 32 1 2.8623 5.9551 2.4027 33 1 2.6066 6.1237 0.6492 34 1 0.3049 6.9468 1.0631 35 1 0.5599 6.7786 2.8166 36 1 2.4332 8.3985 2.7004 37 1 2.1788 8.5672 0.9469 38 1 0.3012 12.5853 2.5090 39 1 4.2188 3.1197 1.9827 40 1 3.9682 4.6426 1.0935 41 1 5.1580 2.8893 -0.2692 42 1 3.6208 3.4142 -0.9976 43 1 5.1584 0.7336 0.9688 44 1 3.8444 1.1589 1.8954 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594440837.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:22 Heat of formation + Delta-G solvation = -86.035076 kcal Electronic energy + Delta-G solvation = -21115.630826 eV Core-core repulsion = 18065.603569 eV Total energy + Delta-G solvation = -3050.027257 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.52405 -39.40637 -36.19743 -35.67478 -34.57265 -34.12468 -30.98853 -30.58893 -29.35996 -26.73128 -25.22687 -24.83200 -22.30808 -22.03865 -20.75304 -19.59866 -18.83483 -18.23235 -17.13029 -16.96020 -16.90608 -16.22097 -15.75937 -15.47468 -15.06194 -14.99225 -14.76675 -14.58369 -14.38808 -14.04445 -13.82956 -13.56414 -13.27285 -13.11549 -12.68684 -12.65998 -12.49724 -12.41797 -12.21146 -11.80142 -11.71267 -11.65395 -11.58676 -11.52204 -11.33089 -11.27313 -10.75868 -10.74386 -9.69256 -9.46931 -8.28374 -6.34374 1.37770 1.41721 1.53737 1.60006 1.96867 2.38635 3.06607 3.50556 3.63378 3.74467 3.88592 3.94850 4.06633 4.10646 4.18995 4.21182 4.32246 4.41593 4.43941 4.58619 4.63448 4.73485 4.80198 4.87016 4.90215 4.96156 4.99622 5.00725 5.02233 5.12618 5.15783 5.20803 5.39413 5.47972 5.52729 5.57760 5.61491 5.66920 6.28755 6.29418 6.35079 6.66307 6.74295 7.16791 7.30043 8.89442 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.032230 B = 0.003670 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.543027 B = 7628.337880 C = 8264.146028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.098 4.098 3 C -0.090 4.090 4 H 0.060 0.940 5 C 0.112 3.888 6 N -0.610 5.610 7 C 0.510 3.490 8 O -0.589 6.589 9 C -0.128 4.128 10 C -0.080 4.080 11 C -0.007 4.007 12 C -0.541 4.541 13 H 0.018 0.982 14 C -0.004 4.004 15 N -0.957 5.957 16 Si 0.963 3.037 17 H -0.264 1.264 18 H -0.286 1.286 19 H -0.235 1.235 20 C 0.095 3.905 21 C -0.167 4.167 22 C 0.102 3.898 23 H 0.090 0.910 24 N -0.842 5.842 25 H 0.043 0.957 26 H 0.045 0.955 27 H 0.063 0.937 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.080 0.920 32 H 0.116 0.884 33 H 0.114 0.886 34 H 0.034 0.966 35 H 0.035 0.965 36 H 0.031 0.969 37 H 0.029 0.971 38 H 0.267 0.733 39 H 0.086 0.914 40 H 0.100 0.900 41 H 0.101 0.899 42 H 0.064 0.936 43 H 0.351 0.649 44 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.793 -25.421 -6.060 30.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.136 4.136 3 C -0.110 4.110 4 H 0.079 0.921 5 C -0.011 4.011 6 N -0.343 5.343 7 C 0.300 3.700 8 O -0.469 6.469 9 C -0.168 4.168 10 C -0.119 4.119 11 C -0.045 4.045 12 C -0.579 4.579 13 H 0.036 0.964 14 C -0.200 4.200 15 N -0.598 5.598 16 Si 0.785 3.215 17 H -0.189 1.189 18 H -0.212 1.212 19 H -0.157 1.157 20 C -0.026 4.026 21 C -0.207 4.207 22 C -0.010 4.010 23 H 0.108 0.892 24 N -0.374 5.374 25 H 0.062 0.938 26 H 0.064 0.936 27 H 0.082 0.918 28 H 0.089 0.911 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.098 0.902 32 H 0.134 0.866 33 H 0.132 0.868 34 H 0.053 0.947 35 H 0.054 0.946 36 H 0.050 0.950 37 H 0.047 0.953 38 H 0.075 0.925 39 H 0.104 0.896 40 H 0.118 0.882 41 H 0.119 0.881 42 H 0.083 0.917 43 H 0.165 0.835 44 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 14.750 -25.973 -6.208 30.507 hybrid contribution 0.000 1.776 0.248 1.793 sum 14.750 -24.197 -5.960 28.958 Atomic orbital electron populations 1.21881 0.96829 1.01842 1.01123 1.21321 0.94428 0.94583 1.03221 1.21527 0.96045 0.96884 0.96514 0.92117 1.21711 0.98845 0.81945 0.98553 1.48242 1.09119 1.06058 1.70913 1.21227 0.86507 0.87454 0.74842 1.90672 1.17420 1.87260 1.51536 1.21733 0.99613 0.89657 1.05756 1.21048 0.96897 0.93935 0.99981 1.19531 0.95518 0.92223 0.97189 1.21555 0.94667 0.92589 1.49115 0.96376 1.26219 1.03505 0.96327 0.93915 1.70111 1.36295 1.01827 1.51580 0.85481 0.78668 0.78363 0.79019 1.18861 1.21176 1.15747 1.22042 0.78410 1.03578 0.98606 1.22727 1.02944 0.97673 0.97342 1.21351 0.92604 0.91591 0.95422 0.89182 1.58915 1.14425 1.59625 1.04424 0.93823 0.93551 0.91761 0.91117 0.90652 0.91664 0.90205 0.86623 0.86786 0.94730 0.94616 0.95037 0.95252 0.92474 0.89621 0.88170 0.88108 0.91733 0.83454 0.84664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.67 9.67 71.98 0.70 -1.97 16 2 C -0.10 -1.43 5.19 30.59 0.16 -1.27 16 3 C -0.09 -1.45 2.16 -10.72 -0.02 -1.48 16 4 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 5 C 0.11 2.32 4.88 86.36 0.42 2.74 16 6 N -0.61 -13.41 2.97 -818.89 -2.43 -15.84 16 7 C 0.51 16.02 7.70 87.66 0.67 16.70 16 8 O -0.59 -24.60 15.39 -3.04 -0.05 -24.64 16 9 C -0.13 -3.78 4.05 29.85 0.12 -3.66 16 10 C -0.08 -3.42 4.44 30.60 0.14 -3.29 16 11 C -0.01 -0.34 4.04 29.85 0.12 -0.22 16 12 C -0.54 -32.84 9.66 25.60 0.25 -32.59 16 13 H 0.02 1.23 7.99 -2.91 -0.02 1.21 16 14 C 0.00 -0.23 5.47 84.65 0.46 0.23 16 15 N -0.96 -62.17 13.96 21.45 0.30 -61.87 16 16 Si 0.96 43.83 27.47 68.60 1.88 45.71 16 17 H -0.26 -11.39 7.11 99.48 0.71 -10.69 16 18 H -0.29 -12.83 7.11 99.48 0.71 -12.13 16 19 H -0.23 -9.44 6.54 99.48 0.65 -8.79 16 20 C 0.10 1.27 5.90 86.36 0.51 1.78 16 21 C -0.17 -1.75 5.77 30.67 0.18 -1.57 16 22 C 0.10 1.15 3.12 44.94 0.14 1.29 16 23 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 24 N -0.84 -7.78 8.48 -168.55 -1.43 -9.21 16 25 H 0.04 0.84 6.70 -2.39 -0.02 0.83 16 26 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.07 1.11 7.80 -2.39 -0.02 1.09 16 30 H 0.06 1.78 5.73 -2.39 -0.01 1.77 16 31 H 0.08 1.44 6.83 -2.39 -0.02 1.42 16 32 H 0.12 2.78 7.94 -2.39 -0.02 2.76 16 33 H 0.11 2.77 7.70 -2.39 -0.02 2.75 16 34 H 0.03 1.61 8.10 -2.39 -0.02 1.59 16 35 H 0.03 1.66 8.10 -2.39 -0.02 1.64 16 36 H 0.03 1.38 7.20 -2.39 -0.02 1.37 16 37 H 0.03 1.28 7.57 -2.39 -0.02 1.26 16 38 H 0.27 15.99 8.31 -92.71 -0.77 15.22 16 39 H 0.09 0.82 7.02 -2.39 -0.02 0.81 16 40 H 0.10 1.23 5.95 -2.39 -0.01 1.22 16 41 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 42 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.35 2.03 9.04 -89.69 -0.81 1.22 16 44 H 0.34 3.39 5.60 -89.70 -0.50 2.89 16 Total: -1.00 -77.33 335.63 1.73 -75.60 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -0.38 Total: 13.56 kcal Atomic # 6 Polarization: -27.15 SS G_CDS: 3.84 Total: -23.30 kcal Atomic # 7 Polarization: -83.35 SS G_CDS: -3.56 Total: -86.92 kcal Atomic # 8 Polarization: -24.60 SS G_CDS: -0.05 Total: -24.64 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 1.88 Total: 45.71 kcal Total: -77.33 1.73 -75.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594440837.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.438 kcal (2) G-P(sol) polarization free energy of solvation -77.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds