Wall clock time and date at job start Mon Mar 30 2020 04:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.46839 * 2 1 4 4 C 1.53007 * 109.46926 * 179.97438 * 3 2 1 5 5 H 1.08994 * 115.55655 * 29.31686 * 4 3 2 6 6 C 1.53001 * 117.50111 * 243.62202 * 4 3 2 7 7 C 1.53001 * 117.49798 * 174.99666 * 4 3 2 8 8 H 1.08997 * 117.50098 * 359.97438 * 7 4 3 9 9 N 1.46499 * 117.49896 * 214.98196 * 7 4 3 10 10 C 1.34777 * 119.99665 * 155.28196 * 9 7 4 11 11 O 1.21283 * 119.99990 * 359.71991 * 10 9 7 12 12 C 1.50698 * 119.99538 * 179.72653 * 10 9 7 13 13 H 1.08994 * 109.47374 * 39.99639 * 12 10 9 14 14 N 1.46899 * 109.46954 * 159.99915 * 12 10 9 15 15 C 1.53003 * 109.47045 * 279.99176 * 12 10 9 16 16 C 1.53000 * 109.47286 * 174.99954 * 15 12 10 17 17 C 1.53003 * 109.47286 * 180.02562 * 16 15 12 18 18 C 1.50699 * 109.47183 * 180.02562 * 17 16 15 19 19 H 1.08006 * 119.99770 * 359.97438 * 18 17 16 20 20 C 1.37873 * 119.99803 * 180.02562 * 18 17 16 21 21 N 1.31508 * 120.00386 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99752 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.47232 * 89.99554 * 22 20 18 24 24 H 1.48502 * 109.47334 * 209.99585 * 22 20 18 25 25 H 1.48501 * 109.47523 * 329.99676 * 22 20 18 26 26 H 1.09000 * 109.47186 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47502 * 300.00182 * 1 2 3 28 28 H 1.09004 * 109.47079 * 59.99807 * 1 2 3 29 29 H 1.09001 * 109.46920 * 240.00308 * 2 1 3 30 30 H 1.09000 * 109.46856 * 119.99769 * 2 1 3 31 31 H 1.09007 * 109.47317 * 60.00066 * 3 2 1 32 32 H 1.08997 * 109.47793 * 300.00019 * 3 2 1 33 33 H 1.08993 * 117.49637 * 145.02083 * 6 4 3 34 34 H 1.09001 * 117.49443 * 359.97438 * 6 4 3 35 35 H 0.97001 * 119.99790 * 334.99909 * 9 7 4 36 36 H 1.00900 * 110.99932 * 296.04066 * 14 12 10 37 37 H 1.00903 * 111.00374 * 59.99775 * 14 12 10 38 38 H 1.08994 * 109.47574 * 295.00663 * 15 12 10 39 39 H 1.09004 * 109.46944 * 55.00483 * 15 12 10 40 40 H 1.08994 * 109.47393 * 300.00821 * 16 15 12 41 41 H 1.09004 * 109.46697 * 60.00377 * 16 15 12 42 42 H 1.08994 * 109.47574 * 300.00709 * 17 16 15 43 43 H 1.09000 * 109.46493 * 60.00733 * 17 16 15 44 44 H 0.96998 * 120.00166 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 4.0404 0.5851 -0.4805 6 6 4.2760 2.0456 1.2167 7 6 4.2765 2.7945 -0.1176 8 1 3.6513 3.6839 -0.1963 9 7 5.5335 2.8374 -0.8687 10 6 5.9420 3.9910 -1.4334 11 8 5.2664 4.9923 -1.3240 12 6 7.2382 4.0366 -2.2008 13 1 7.3433 3.1263 -2.7908 14 7 7.2371 5.2023 -3.0948 15 6 8.4076 4.1470 -1.2204 16 6 9.7276 4.0679 -1.9901 17 6 10.8971 4.1776 -1.0097 18 6 12.1972 4.1003 -1.7679 19 1 12.1900 3.9841 -2.8416 20 6 13.3957 4.1769 -1.0907 21 7 13.4044 4.3179 0.2168 22 14 15.0072 4.0804 -2.0305 23 1 15.4301 5.4468 -2.4297 24 1 16.0496 3.4728 -1.1646 25 1 14.8232 3.2448 -3.2442 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6766 1.9564 -0.8899 33 1 5.2109 1.5850 1.5356 34 1 3.6504 2.4428 2.0160 35 1 6.0738 2.0366 -0.9562 36 1 6.5133 5.1217 -3.7931 37 1 7.1407 6.0595 -2.5713 38 1 8.3511 5.0992 -0.6930 39 1 8.3571 3.3296 -0.5010 40 1 9.7842 3.1157 -2.5175 41 1 9.7782 4.8853 -2.7095 42 1 10.8407 5.1296 -0.4819 43 1 10.8462 3.3600 -0.2907 44 1 14.2476 4.3722 0.6931 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594445384.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:36 Heat of formation + Delta-G solvation = -54.178211 kcal Electronic energy + Delta-G solvation = -19836.160583 eV Core-core repulsion = 16787.514744 eV Total energy + Delta-G solvation = -3048.645840 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.13821 -38.20845 -35.69075 -34.78944 -33.33382 -32.70526 -31.34300 -28.06548 -27.49978 -25.25303 -22.94429 -22.32976 -21.43232 -21.04589 -20.10329 -19.98369 -17.23020 -16.78629 -16.31278 -15.80728 -15.52687 -14.89800 -14.60300 -14.47370 -14.38916 -13.97415 -13.63695 -13.23572 -12.97893 -12.69236 -12.38340 -12.36452 -11.78678 -11.76416 -11.49903 -11.44609 -11.18157 -11.14128 -11.11992 -10.74548 -10.61238 -10.41650 -10.34172 -10.20427 -9.59938 -9.21934 -9.04096 -8.86562 -8.57140 -8.28930 -5.94568 -3.96180 2.48047 2.95580 3.35638 3.41522 3.45160 3.59287 4.30252 4.48591 4.50700 4.57846 4.62227 4.73218 4.78235 4.79790 4.95880 5.16320 5.17911 5.35956 5.40493 5.41401 5.45103 5.49458 5.52537 5.66829 5.69433 5.84245 5.88163 5.93544 5.99823 6.12530 6.34348 6.44755 6.82739 7.01728 7.09213 7.25169 7.38034 7.51825 7.75635 7.91153 8.07031 8.10606 8.50350 9.11507 9.67513 11.16866 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.030174 B = 0.002702 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.742283 B =10359.646343 C =10829.595804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.122 4.122 3 C -0.088 4.088 4 C -0.160 4.160 5 H 0.107 0.893 6 C -0.188 4.188 7 C 0.082 3.918 8 H 0.134 0.866 9 N -0.702 5.702 10 C 0.487 3.513 11 O -0.549 6.549 12 C 0.078 3.922 13 H 0.101 0.899 14 N -0.811 5.811 15 C -0.103 4.103 16 C -0.100 4.100 17 C 0.019 3.981 18 C -0.516 4.516 19 H 0.055 0.945 20 C 0.054 3.946 21 N -0.898 5.898 22 Si 0.891 3.109 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.274 1.274 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.404 0.596 36 H 0.338 0.662 37 H 0.350 0.650 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.044 0.956 41 H 0.063 0.937 42 H 0.014 0.986 43 H 0.012 0.988 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.781 -7.956 -0.592 25.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.126 4.126 4 C -0.179 4.179 5 H 0.125 0.875 6 C -0.227 4.227 7 C -0.025 4.025 8 H 0.152 0.848 9 N -0.352 5.352 10 C 0.273 3.727 11 O -0.426 6.426 12 C -0.037 4.037 13 H 0.119 0.881 14 N -0.339 5.339 15 C -0.142 4.142 16 C -0.138 4.138 17 C -0.018 4.018 18 C -0.554 4.554 19 H 0.073 0.927 20 C -0.147 4.147 21 N -0.537 5.537 22 Si 0.719 3.281 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.199 1.199 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.117 0.883 34 H 0.119 0.881 35 H 0.239 0.761 36 H 0.150 0.850 37 H 0.165 0.835 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.063 0.937 41 H 0.082 0.918 42 H 0.032 0.968 43 H 0.030 0.970 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -23.379 -7.413 -0.602 24.533 hybrid contribution 0.226 -0.378 0.074 0.447 sum -23.153 -7.791 -0.528 24.434 Atomic orbital electron populations 1.21786 0.95882 1.01630 1.01835 1.21502 0.95711 0.96535 1.02161 1.21202 0.91913 0.97232 1.02260 1.22888 0.95362 0.97103 1.02552 0.87503 1.23626 1.02866 1.04055 0.92156 1.21720 0.88501 0.96837 0.95413 0.84844 1.45584 1.22636 1.12956 1.53977 1.22606 0.88723 0.82548 0.78869 1.90660 1.57041 1.34173 1.60761 1.21773 0.90815 0.96713 0.94444 0.88146 1.59044 1.53922 1.04182 1.16772 1.21654 0.93922 1.02091 0.96495 1.21541 0.92328 1.00949 0.98941 1.19124 0.91592 0.96930 0.94163 1.21280 0.91089 1.49335 0.93729 0.92651 1.25038 0.99239 0.95521 0.94852 1.69966 1.26241 1.50729 1.06788 0.86610 0.83504 0.78191 0.79776 1.20703 1.21338 1.19897 0.92751 0.92742 0.92748 0.91980 0.91837 0.91599 0.91507 0.88286 0.88074 0.76133 0.85003 0.83531 0.91888 0.91941 0.93677 0.91806 0.96774 0.96975 0.93118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.91 37.16 0.37 -0.50 16 2 C -0.12 -0.75 5.89 -26.73 -0.16 -0.90 16 3 C -0.09 -0.61 5.50 -26.73 -0.15 -0.76 16 4 C -0.16 -1.24 5.66 -90.62 -0.51 -1.75 16 5 H 0.11 0.78 8.07 -51.93 -0.42 0.36 16 6 C -0.19 -1.60 10.10 -26.73 -0.27 -1.87 16 7 C 0.08 0.83 6.15 -67.93 -0.42 0.41 16 8 H 0.13 1.56 7.40 -51.93 -0.38 1.18 16 9 N -0.70 -7.66 5.57 -53.80 -0.30 -7.96 16 10 C 0.49 6.66 7.07 -10.99 -0.08 6.58 16 11 O -0.55 -9.19 15.82 5.55 0.09 -9.10 16 12 C 0.08 1.07 3.15 -68.86 -0.22 0.85 16 13 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 14 N -0.81 -11.16 8.44 -5.66 -0.05 -11.21 16 15 C -0.10 -1.71 4.84 -26.73 -0.13 -1.84 16 16 C -0.10 -2.04 5.04 -26.73 -0.13 -2.17 16 17 C 0.02 0.49 4.97 -27.88 -0.14 0.35 16 18 C -0.52 -14.82 9.11 -34.44 -0.31 -15.13 16 19 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 20 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 21 N -0.90 -27.36 13.29 55.43 0.74 -26.62 16 22 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 25 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 26 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.44 7.87 -51.92 -0.41 0.03 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.10 0.79 8.03 -51.93 -0.42 0.37 16 35 H 0.40 3.58 8.83 -40.82 -0.36 3.22 16 36 H 0.34 4.02 9.06 -39.29 -0.36 3.67 16 37 H 0.35 5.03 8.58 -39.29 -0.34 4.69 16 38 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 40 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.06 1.35 7.75 -51.93 -0.40 0.94 16 42 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 44 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 364.32 15.07 5.49 5.49 Total: -1.00 -32.41 364.32 -9.42 -41.83 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -8.12 Total: 5.88 kcal Atomic # 6 Polarization: -13.00 SS G_CDS: -2.25 Total: -15.25 kcal Atomic # 7 Polarization: -46.17 SS G_CDS: 0.39 Total: -45.79 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: 0.09 Total: -9.10 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.41 -9.42 -41.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594445384.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.343 kcal (2) G-P(sol) polarization free energy of solvation -32.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds