Wall clock time and date at job start Mon Mar 30 2020 04:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47312 * 2 1 4 4 C 1.53002 * 109.47003 * 179.97438 * 3 2 1 5 5 H 1.08992 * 115.56550 * 29.31097 * 4 3 2 6 6 C 1.53006 * 117.49724 * 243.61925 * 4 3 2 7 7 C 1.52999 * 60.00089 * 252.51316 * 6 4 3 8 8 H 1.09002 * 117.49803 * 107.49109 * 7 6 4 9 9 N 1.46494 * 117.51777 * 252.51944 * 7 6 4 10 10 C 1.34780 * 120.00272 * 223.71733 * 9 7 6 11 11 O 1.21280 * 119.99499 * 0.02562 * 10 9 7 12 12 C 1.50705 * 120.00049 * 179.97438 * 10 9 7 13 13 H 1.08998 * 109.47096 * 320.00319 * 12 10 9 14 14 N 1.46900 * 109.46981 * 199.99973 * 12 10 9 15 15 C 1.53003 * 109.46931 * 80.00233 * 12 10 9 16 16 C 1.52997 * 109.47061 * 184.99547 * 15 12 10 17 17 C 1.52995 * 109.47173 * 179.97438 * 16 15 12 18 18 C 1.50695 * 109.47221 * 180.02562 * 17 16 15 19 19 H 1.08001 * 120.00187 * 0.02562 * 18 17 16 20 20 C 1.37883 * 120.00373 * 180.02562 * 18 17 16 21 21 N 1.31520 * 119.99303 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00400 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.46944 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47391 * 119.99847 * 22 20 18 25 25 H 1.48501 * 109.46954 * 240.00199 * 22 20 18 26 26 H 1.09002 * 109.47212 * 60.00091 * 1 2 3 27 27 H 1.09004 * 109.47697 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.47392 * 299.99961 * 1 2 3 29 29 H 1.08997 * 109.47106 * 239.99517 * 2 1 3 30 30 H 1.09002 * 109.46744 * 120.00162 * 2 1 3 31 31 H 1.09006 * 109.47319 * 59.99984 * 3 2 1 32 32 H 1.08994 * 109.47541 * 300.00079 * 3 2 1 33 33 H 1.09003 * 117.49619 * 145.02013 * 6 4 3 34 34 H 1.08995 * 117.50015 * 0.02562 * 6 4 3 35 35 H 0.97004 * 120.00325 * 43.72007 * 9 7 6 36 36 H 1.00908 * 110.99623 * 300.00175 * 14 12 10 37 37 H 1.00898 * 111.00279 * 63.95239 * 14 12 10 38 38 H 1.09001 * 109.47057 * 304.99951 * 15 12 10 39 39 H 1.09000 * 109.46917 * 64.99607 * 15 12 10 40 40 H 1.08992 * 109.47267 * 299.99975 * 16 15 12 41 41 H 1.09004 * 109.46855 * 59.99908 * 16 15 12 42 42 H 1.09001 * 109.47895 * 300.00656 * 17 16 15 43 43 H 1.09004 * 109.46937 * 60.00409 * 17 16 15 44 44 H 0.97002 * 119.99228 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4423 0.0006 5 1 4.0405 0.5849 -0.4804 6 6 4.2760 2.0455 1.2167 7 6 4.2765 2.7943 -0.1175 8 1 3.6514 3.6838 -0.1957 9 7 5.5333 2.8373 -0.8690 10 6 5.9399 3.9900 -1.4369 11 8 5.2654 4.9918 -1.3253 12 6 7.2331 4.0343 -2.2094 13 1 7.9856 3.4387 -1.6927 14 7 7.6948 5.4251 -2.3119 15 6 7.0087 3.4668 -3.6125 16 6 8.3452 3.3961 -4.3538 17 6 8.1209 2.8280 -5.7565 18 6 9.4374 2.7577 -6.4865 19 1 10.3436 3.0850 -5.9985 20 6 9.4851 2.2754 -7.7773 21 7 8.3815 1.8773 -8.3717 22 14 11.1171 2.1876 -8.6819 23 1 12.1998 2.6924 -7.7997 24 1 11.4000 0.7790 -9.0571 25 1 11.0489 3.0224 -9.9082 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3635 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8932 -0.5139 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9563 -0.8899 33 1 5.2109 1.5848 1.5357 34 1 3.6504 2.4420 2.0164 35 1 6.0730 2.0362 -0.9579 36 1 7.0139 5.9981 -2.7876 37 1 7.9118 5.8021 -1.4015 38 1 6.5822 2.4666 -3.5359 39 1 6.3230 4.1132 -4.1604 40 1 8.7716 4.3962 -4.4304 41 1 9.0308 2.7497 -3.8057 42 1 7.6946 1.8277 -5.6797 43 1 7.4351 3.4740 -6.3048 44 1 8.4151 1.5384 -9.2800 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594445385.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:39 Heat of formation + Delta-G solvation = -54.202689 kcal Electronic energy + Delta-G solvation = -19910.055490 eV Core-core repulsion = 16861.408589 eV Total energy + Delta-G solvation = -3048.646901 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.13833 -38.20068 -35.68922 -34.75052 -33.33278 -32.69449 -31.34183 -28.06051 -27.45847 -25.25511 -22.97369 -22.28232 -21.41308 -21.02257 -20.09761 -19.99608 -17.21568 -16.78451 -16.33076 -15.82181 -15.47972 -14.79486 -14.66325 -14.48568 -14.37059 -13.97375 -13.59909 -13.20755 -12.98852 -12.64218 -12.40422 -12.33711 -11.76572 -11.75680 -11.49726 -11.41295 -11.15050 -11.12688 -11.08695 -10.75661 -10.59787 -10.41466 -10.33020 -10.19616 -9.60017 -9.22179 -9.02519 -8.87306 -8.56820 -8.29167 -5.94766 -3.96213 2.47703 2.96237 3.34400 3.41770 3.46516 3.58844 4.32161 4.49142 4.50298 4.58026 4.64301 4.77042 4.80021 4.84085 4.98995 5.17831 5.19973 5.40482 5.41361 5.42307 5.44929 5.51806 5.55702 5.67222 5.72943 5.88536 5.93663 5.94041 6.04862 6.12527 6.34245 6.44828 6.82730 7.01825 7.09199 7.25248 7.37944 7.51785 7.75928 7.91164 8.07034 8.10526 8.50414 9.11731 9.67536 11.16730 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.018865 B = 0.003088 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.858351 B = 9064.869539 C =10168.502695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.122 4.122 3 C -0.089 4.089 4 C -0.158 4.158 5 H 0.109 0.891 6 C -0.190 4.190 7 C 0.082 3.918 8 H 0.134 0.866 9 N -0.702 5.702 10 C 0.487 3.513 11 O -0.549 6.549 12 C 0.078 3.922 13 H 0.101 0.899 14 N -0.811 5.811 15 C -0.103 4.103 16 C -0.100 4.100 17 C 0.019 3.981 18 C -0.515 4.515 19 H 0.056 0.944 20 C 0.054 3.946 21 N -0.897 5.897 22 Si 0.890 3.110 23 H -0.273 1.273 24 H -0.285 1.285 25 H -0.285 1.285 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.096 0.904 34 H 0.100 0.900 35 H 0.404 0.596 36 H 0.350 0.650 37 H 0.338 0.662 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.044 0.956 42 H 0.012 0.988 43 H 0.014 0.986 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.523 -1.989 20.354 23.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.126 4.126 4 C -0.177 4.177 5 H 0.127 0.873 6 C -0.228 4.228 7 C -0.024 4.024 8 H 0.152 0.848 9 N -0.351 5.351 10 C 0.273 3.727 11 O -0.426 6.426 12 C -0.037 4.037 13 H 0.118 0.882 14 N -0.339 5.339 15 C -0.142 4.142 16 C -0.137 4.137 17 C -0.018 4.018 18 C -0.554 4.554 19 H 0.074 0.926 20 C -0.147 4.147 21 N -0.537 5.537 22 Si 0.719 3.281 23 H -0.197 1.197 24 H -0.211 1.211 25 H -0.211 1.211 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.114 0.886 34 H 0.118 0.882 35 H 0.239 0.761 36 H 0.165 0.835 37 H 0.150 0.850 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.063 0.937 42 H 0.030 0.970 43 H 0.032 0.968 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -11.434 -1.592 19.806 22.925 hybrid contribution 0.196 -0.407 0.028 0.453 sum -11.238 -1.999 19.834 22.884 Atomic orbital electron populations 1.21785 0.95872 1.01650 1.01831 1.21501 0.95744 0.96496 1.02190 1.21203 0.91835 0.97318 1.02294 1.22893 0.95501 0.97222 1.02118 0.87342 1.23613 1.02755 1.04287 0.92191 1.21720 0.88603 0.97062 0.95065 0.84821 1.45583 1.22831 1.12937 1.53794 1.22610 0.89179 0.82631 0.78324 1.90659 1.56848 1.34403 1.60715 1.21776 0.91057 0.93249 0.97662 0.88151 1.59048 1.48332 1.01809 1.24726 1.21657 1.01201 0.99765 0.91553 1.21537 0.93199 1.01412 0.97601 1.19128 0.96904 0.95762 0.90043 1.21320 0.94142 1.41447 0.98451 0.92604 1.25042 0.96272 0.95637 0.97702 1.69986 1.26725 1.43677 1.13335 0.86558 0.84260 0.77547 0.79774 1.19721 1.21121 1.21077 0.92639 0.92739 0.92837 0.91804 0.91955 0.91696 0.91319 0.88568 0.88156 0.76135 0.83534 0.85002 0.91919 0.91890 0.91807 0.93684 0.96974 0.96766 0.93180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.91 37.16 0.37 -0.63 16 2 C -0.12 -0.85 5.89 -26.74 -0.16 -1.00 16 3 C -0.09 -0.67 5.50 -26.73 -0.15 -0.82 16 4 C -0.16 -1.29 5.66 -90.61 -0.51 -1.81 16 5 H 0.11 0.87 8.07 -51.93 -0.42 0.45 16 6 C -0.19 -1.49 10.10 -26.73 -0.27 -1.76 16 7 C 0.08 0.83 6.15 -67.93 -0.42 0.42 16 8 H 0.13 1.58 7.40 -51.93 -0.38 1.20 16 9 N -0.70 -7.66 5.57 -53.80 -0.30 -7.96 16 10 C 0.49 6.66 7.07 -10.98 -0.08 6.58 16 11 O -0.55 -9.19 15.82 5.56 0.09 -9.10 16 12 C 0.08 1.07 3.15 -68.86 -0.22 0.85 16 13 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 14 N -0.81 -11.16 8.44 -5.65 -0.05 -11.21 16 15 C -0.10 -1.71 4.84 -26.73 -0.13 -1.84 16 16 C -0.10 -2.04 5.04 -26.73 -0.13 -2.17 16 17 C 0.02 0.49 4.97 -27.89 -0.14 0.35 16 18 C -0.52 -14.79 9.11 -34.44 -0.31 -15.10 16 19 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 20 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 21 N -0.90 -27.33 13.29 55.43 0.74 -26.60 16 22 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 23 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 25 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.45 7.87 -51.93 -0.41 0.05 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.10 0.71 8.03 -51.93 -0.42 0.29 16 35 H 0.40 3.58 8.83 -40.82 -0.36 3.22 16 36 H 0.35 5.03 8.58 -39.29 -0.34 4.69 16 37 H 0.34 4.03 9.06 -39.29 -0.36 3.67 16 38 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.06 1.35 7.75 -51.93 -0.40 0.94 16 41 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 42 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 43 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 364.32 15.07 5.49 5.49 Total: -1.00 -32.40 364.32 -9.42 -41.82 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -8.12 Total: 6.10 kcal Atomic # 6 Polarization: -13.21 SS G_CDS: -2.25 Total: -15.46 kcal Atomic # 7 Polarization: -46.15 SS G_CDS: 0.39 Total: -45.76 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: 0.09 Total: -9.10 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.40 -9.42 -41.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594445385.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.378 kcal (2) G-P(sol) polarization free energy of solvation -32.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds