Wall clock time and date at job start Mon Mar 30 2020 05:33:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47253 * 2 1 4 4 H 1.08996 * 110.91585 * 57.45361 * 3 2 1 5 5 C 1.55155 * 111.00471 * 293.54807 * 3 2 1 6 6 C 1.54322 * 102.94172 * 206.42329 * 5 3 2 7 7 N 1.47025 * 107.27254 * 22.19177 * 6 5 3 8 8 C 1.34776 * 125.65145 * 181.01770 * 7 6 5 9 9 O 1.21278 * 120.00100 * 180.02562 * 8 7 6 10 10 C 1.50701 * 119.99593 * 0.03218 * 8 7 6 11 11 H 1.08994 * 109.47368 * 39.99862 * 10 8 7 12 12 N 1.46909 * 109.46889 * 159.99710 * 10 8 7 13 13 C 1.53001 * 109.47025 * 279.99058 * 10 8 7 14 14 C 1.53000 * 109.46886 * 175.00080 * 13 10 8 15 15 C 1.52997 * 109.47060 * 180.02562 * 14 13 10 16 16 C 1.50697 * 109.47466 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99890 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00428 * 179.97438 * 16 15 14 19 19 N 1.31517 * 120.00362 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 119.99850 * 359.97438 * 18 16 15 21 21 H 1.48504 * 109.47052 * 89.99717 * 20 18 16 22 22 H 1.48495 * 109.47307 * 209.99656 * 20 18 16 23 23 H 1.48500 * 109.47143 * 330.00164 * 20 18 16 24 24 C 1.47431 * 108.70382 * 1.28936 * 7 6 5 25 25 H 1.09002 * 109.47282 * 299.99574 * 1 2 3 26 26 H 1.09000 * 109.47646 * 59.99863 * 1 2 3 27 27 H 1.08999 * 109.47278 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46940 * 239.99726 * 2 1 3 29 29 H 1.09007 * 109.47183 * 120.00615 * 2 1 3 30 30 H 1.08992 * 110.72172 * 88.06163 * 5 3 2 31 31 H 1.09005 * 110.71964 * 324.78371 * 5 3 2 32 32 H 1.08994 * 109.88397 * 262.77582 * 6 5 3 33 33 H 1.08997 * 110.01169 * 141.68125 * 6 5 3 34 34 H 1.00897 * 110.99694 * 296.04382 * 12 10 8 35 35 H 1.00898 * 111.00060 * 59.99396 * 12 10 8 36 36 H 1.09001 * 109.46652 * 55.00425 * 13 10 8 37 37 H 1.08992 * 109.47514 * 295.00514 * 13 10 8 38 38 H 1.09002 * 109.47398 * 300.00496 * 14 13 10 39 39 H 1.09001 * 109.47194 * 60.00677 * 14 13 10 40 40 H 1.09002 * 109.47153 * 300.00319 * 15 14 13 41 41 H 1.08998 * 109.47533 * 59.99948 * 15 14 13 42 42 H 0.96994 * 119.99814 * 180.02562 * 19 18 16 43 43 H 1.09000 * 110.36767 * 94.47840 * 24 7 6 44 44 H 1.08989 * 110.36599 * 216.80779 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6533 1.9919 0.8582 5 6 1.6798 2.1597 -1.3278 6 6 2.7790 3.2361 -1.4484 7 7 3.9175 2.7908 -0.6316 8 6 5.0716 3.4652 -0.4586 9 8 5.9468 3.0000 0.2402 10 6 5.2742 4.7974 -1.1334 11 1 4.3485 5.3710 -1.0903 12 7 6.3412 5.5371 -0.4460 13 6 5.6684 4.5740 -2.5948 14 6 5.7526 5.9229 -3.3121 15 6 6.1462 5.6996 -4.7736 16 6 6.2298 7.0281 -5.4800 17 1 6.0232 7.9405 -4.9404 18 6 6.5709 7.0789 -6.8149 19 7 6.6443 8.2383 -7.4313 20 14 6.9303 5.5008 -7.7478 21 1 5.6735 4.9813 -8.3443 22 1 7.9132 5.7763 -8.8263 23 1 7.4897 4.4905 -6.8143 24 6 3.5903 1.4814 -0.0385 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8932 -0.5139 -0.8900 29 1 1.8933 -0.5140 0.8900 30 1 0.6943 2.6206 -1.2622 31 1 1.7267 1.4650 -2.1665 32 1 2.4061 4.1901 -1.0758 33 1 3.0872 3.3396 -2.4888 34 1 6.0772 5.7535 0.5035 35 1 7.2105 5.0256 -0.4720 36 1 4.9194 3.9497 -3.0818 37 1 6.6382 4.0785 -2.6379 38 1 4.7828 6.4185 -3.2690 39 1 6.5017 6.5473 -2.8251 40 1 7.1160 5.2038 -4.8170 41 1 5.3970 5.0753 -5.2604 42 1 6.8839 8.2740 -8.3705 43 1 3.9770 0.6752 -0.6619 44 1 3.9963 1.4100 0.9705 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594446854.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:03 Heat of formation + Delta-G solvation = -65.346742 kcal Electronic energy + Delta-G solvation = -20778.507169 eV Core-core repulsion = 17729.377026 eV Total energy + Delta-G solvation = -3049.130143 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.42783 -38.24109 -35.78652 -34.38449 -33.32315 -31.52565 -30.50668 -29.32746 -28.13190 -25.55156 -23.61108 -23.18882 -21.67776 -20.53449 -20.01948 -19.13645 -17.41940 -16.68179 -16.57615 -15.90886 -15.43081 -15.05096 -14.47987 -14.43455 -14.09274 -14.05858 -13.60021 -13.25785 -13.01809 -12.77033 -12.59547 -12.55398 -12.18617 -11.90751 -11.70866 -11.58836 -11.36980 -11.17441 -11.01802 -10.91894 -10.77595 -10.67911 -10.30827 -9.81653 -9.65886 -9.47137 -9.11878 -8.81373 -8.61087 -8.47951 -5.98628 -3.95656 2.52385 2.84814 3.33409 3.41174 3.45750 4.03297 4.25125 4.38307 4.50049 4.52793 4.72389 4.81087 4.86687 4.98621 5.01338 5.12748 5.16549 5.31942 5.35694 5.38306 5.39765 5.48776 5.53988 5.59782 5.63061 5.71291 5.84061 5.86419 5.95656 5.98796 6.12935 6.32052 6.67310 6.79038 7.02097 7.07136 7.36918 7.43433 7.49350 7.54832 7.86694 8.04118 8.61744 9.07981 9.64539 11.15100 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.021071 B = 0.003832 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.501491 B = 7304.928157 C = 8093.157063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.113 4.113 3 C -0.102 4.102 4 H 0.084 0.916 5 C -0.127 4.127 6 C 0.094 3.906 7 N -0.617 5.617 8 C 0.497 3.503 9 O -0.551 6.551 10 C 0.082 3.918 11 H 0.100 0.900 12 N -0.811 5.811 13 C -0.106 4.106 14 C -0.091 4.091 15 C -0.016 4.016 16 C -0.516 4.516 17 H 0.072 0.928 18 C 0.064 3.936 19 N -0.906 5.906 20 Si 0.879 3.121 21 H -0.278 1.278 22 H -0.289 1.289 23 H -0.266 1.266 24 C 0.106 3.894 25 H 0.054 0.946 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.339 0.661 35 H 0.350 0.650 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.050 0.950 39 H 0.069 0.931 40 H 0.013 0.987 41 H 0.007 0.993 42 H 0.262 0.738 43 H 0.067 0.933 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.699 -15.844 16.054 25.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.151 4.151 3 C -0.121 4.121 4 H 0.103 0.897 5 C -0.164 4.164 6 C -0.029 4.029 7 N -0.352 5.352 8 C 0.285 3.715 9 O -0.429 6.429 10 C -0.034 4.034 11 H 0.118 0.882 12 N -0.339 5.339 13 C -0.144 4.144 14 C -0.129 4.129 15 C -0.053 4.053 16 C -0.554 4.554 17 H 0.090 0.910 18 C -0.136 4.136 19 N -0.545 5.545 20 Si 0.707 3.293 21 H -0.204 1.204 22 H -0.215 1.215 23 H -0.191 1.191 24 C -0.017 4.017 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.102 0.898 31 H 0.097 0.903 32 H 0.090 0.910 33 H 0.096 0.904 34 H 0.151 0.849 35 H 0.164 0.836 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.069 0.931 39 H 0.088 0.912 40 H 0.032 0.968 41 H 0.025 0.975 42 H 0.071 0.929 43 H 0.085 0.915 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -12.200 -15.368 15.702 25.131 hybrid contribution 0.143 -1.630 -0.010 1.636 sum -12.057 -16.998 15.692 26.087 Atomic orbital electron populations 1.21764 0.95372 1.01743 1.02059 1.21450 0.96233 0.94996 1.02444 1.22470 0.94287 0.96896 0.98438 0.89745 1.22730 0.98358 0.97565 0.97789 1.22173 0.86245 0.98196 0.96251 1.48642 1.16130 1.20934 1.49504 1.22298 0.80029 0.88147 0.81060 1.90670 1.41770 1.69992 1.40486 1.21711 0.97304 0.88371 0.95998 0.88166 1.59064 1.05282 1.47990 1.21589 1.21678 1.01347 1.00839 0.90586 1.21363 1.01536 0.93615 0.96395 1.19601 0.95781 0.97548 0.92375 1.21179 1.46356 0.92810 0.95030 0.90980 1.25046 0.95016 0.95892 0.97690 1.69922 1.49424 1.24281 1.10917 0.86785 0.78354 0.84513 0.79659 1.20416 1.21471 1.19069 1.22320 0.94515 0.85677 0.99146 0.92724 0.92373 0.92672 0.91531 0.91667 0.89804 0.90252 0.91026 0.90382 0.84920 0.83599 0.91972 0.91955 0.93072 0.91204 0.96835 0.97474 0.92853 0.91501 0.90714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.76 37.15 0.36 -0.42 16 2 C -0.11 -0.66 5.45 -26.73 -0.15 -0.81 16 3 C -0.10 -0.72 3.09 -88.35 -0.27 -0.99 16 4 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 5 C -0.13 -0.87 5.59 -24.90 -0.14 -1.01 16 6 C 0.09 0.86 6.19 -3.06 -0.02 0.85 16 7 N -0.62 -7.18 3.33 -170.38 -0.57 -7.75 16 8 C 0.50 7.10 7.09 -10.98 -0.08 7.02 16 9 O -0.55 -9.53 16.50 5.56 0.09 -9.44 16 10 C 0.08 1.14 2.57 -68.86 -0.18 0.96 16 11 H 0.10 1.27 7.46 -51.93 -0.39 0.88 16 12 N -0.81 -11.31 8.44 -5.65 -0.05 -11.36 16 13 C -0.11 -1.71 4.83 -26.73 -0.13 -1.84 16 14 C -0.09 -1.81 5.04 -26.73 -0.13 -1.94 16 15 C -0.02 -0.38 4.04 -27.89 -0.11 -0.49 16 16 C -0.52 -14.96 9.66 -34.44 -0.33 -15.29 16 17 H 0.07 2.25 7.99 -52.49 -0.42 1.83 16 18 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 19 N -0.91 -28.39 13.96 55.43 0.77 -27.61 16 20 Si 0.88 22.09 27.47 -169.99 -4.67 17.42 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 23 H -0.27 -6.46 6.54 56.52 0.37 -6.09 16 24 C 0.11 1.05 6.38 -2.40 -0.02 1.04 16 25 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.06 0.29 7.51 -51.93 -0.39 -0.10 16 27 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.07 0.40 8.11 -51.93 -0.42 -0.02 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.08 0.47 8.13 -51.93 -0.42 0.05 16 31 H 0.08 0.53 8.01 -51.93 -0.42 0.12 16 32 H 0.07 0.60 7.85 -51.93 -0.41 0.19 16 33 H 0.08 0.76 6.75 -51.93 -0.35 0.41 16 34 H 0.34 4.13 9.06 -39.29 -0.36 3.78 16 35 H 0.35 5.03 8.58 -39.29 -0.34 4.70 16 36 H 0.06 0.93 6.65 -51.93 -0.35 0.59 16 37 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.07 1.46 7.75 -51.93 -0.40 1.06 16 40 H 0.01 0.33 7.20 -51.93 -0.37 -0.04 16 41 H 0.01 0.17 7.57 -51.93 -0.39 -0.23 16 42 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 43 H 0.07 0.67 8.04 -51.93 -0.42 0.25 16 44 H 0.07 0.81 8.03 -51.94 -0.42 0.39 16 LS Contribution 347.46 15.07 5.24 5.24 Total: -1.00 -33.29 347.46 -8.43 -41.72 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -7.96 Total: 2.91 kcal Atomic # 6 Polarization: -9.84 SS G_CDS: -1.29 Total: -11.13 kcal Atomic # 7 Polarization: -46.88 SS G_CDS: 0.16 Total: -46.72 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: 0.09 Total: -9.44 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.67 Total: 17.42 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.29 -8.43 -41.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594446854.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.623 kcal (2) G-P(sol) polarization free energy of solvation -33.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds