Wall clock time and date at job start Mon Mar 30 2020 05:33:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47179 * 2 1 4 4 H 1.08997 * 110.88665 * 308.88278 * 3 2 1 5 5 C 1.55157 * 111.03437 * 72.78803 * 3 2 1 6 6 C 1.54338 * 103.01929 * 153.39565 * 5 3 2 7 7 N 1.47024 * 107.26605 * 338.14023 * 6 5 3 8 8 C 1.34777 * 125.64725 * 178.85170 * 7 6 5 9 9 O 1.21277 * 119.99616 * 179.69011 * 8 7 6 10 10 C 1.50696 * 120.00114 * 359.68877 * 8 7 6 11 11 H 1.09000 * 109.47212 * 40.00257 * 10 8 7 12 12 N 1.46896 * 109.47219 * 159.99955 * 10 8 7 13 13 C 1.53005 * 109.47326 * 280.00345 * 10 8 7 14 14 C 1.52996 * 109.47090 * 174.99911 * 13 10 8 15 15 C 1.53002 * 109.46736 * 179.97438 * 14 13 10 16 16 C 1.50706 * 109.47153 * 179.97438 * 15 14 13 17 17 H 1.07998 * 119.99503 * 0.02562 * 16 15 14 18 18 C 1.37871 * 120.00434 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99826 * 359.72891 * 18 16 15 20 20 Si 1.86800 * 120.00406 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47364 * 179.72558 * 20 18 16 22 22 H 1.48508 * 109.46883 * 299.72681 * 20 18 16 23 23 H 1.48497 * 109.46870 * 59.72491 * 20 18 16 24 24 C 1.47423 * 108.69919 * 358.58640 * 7 6 5 25 25 H 1.09002 * 109.46994 * 299.99554 * 1 2 3 26 26 H 1.09000 * 109.47570 * 59.99696 * 1 2 3 27 27 H 1.09000 * 109.46943 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46994 * 240.00446 * 2 1 3 29 29 H 1.09000 * 109.47570 * 120.00303 * 2 1 3 30 30 H 1.08996 * 110.71778 * 271.95150 * 5 3 2 31 31 H 1.08996 * 110.72265 * 35.04808 * 5 3 2 32 32 H 1.08999 * 109.98808 * 218.66587 * 6 5 3 33 33 H 1.09007 * 109.77887 * 97.49490 * 6 5 3 34 34 H 1.00897 * 111.00137 * 296.04671 * 12 10 8 35 35 H 1.00897 * 110.99946 * 60.00401 * 12 10 8 36 36 H 1.09007 * 109.47086 * 54.99633 * 13 10 8 37 37 H 1.09001 * 109.46760 * 294.99710 * 13 10 8 38 38 H 1.08999 * 109.46983 * 60.00393 * 14 13 10 39 39 H 1.08993 * 109.47310 * 299.99833 * 14 13 10 40 40 H 1.09004 * 109.47178 * 60.00488 * 15 14 13 41 41 H 1.08993 * 109.47411 * 300.00171 * 15 14 13 42 42 H 0.97000 * 120.00236 * 0.27947 * 19 18 16 43 43 H 1.09006 * 110.36287 * 143.20039 * 24 7 6 44 44 H 1.09001 * 110.36756 * 265.51252 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5668 2.0219 -0.7927 5 6 1.8216 2.1104 1.3833 6 6 2.9321 3.1812 1.4316 7 7 3.9757 2.7707 0.4809 8 6 5.1066 3.4532 0.2130 9 8 5.9035 3.0151 -0.5895 10 6 5.3809 4.7605 0.9105 11 1 5.0773 4.6859 1.9547 12 7 6.8167 5.0622 0.8384 13 6 4.5899 5.8785 0.2281 14 6 4.7696 7.1810 1.0103 15 6 3.9791 8.2990 0.3275 16 6 4.1556 9.5820 1.0982 17 1 4.7704 9.5983 1.9860 18 6 3.5322 10.7348 0.6701 19 7 2.7878 10.7161 -0.4139 20 14 3.7515 12.3252 1.6251 21 1 2.9891 13.4117 0.9591 22 1 3.2478 12.1442 3.0104 23 1 5.1919 12.6839 1.6650 24 6 3.5833 1.4858 -0.1261 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 0.8355 2.5715 1.4375 31 1 1.9513 1.3851 2.1866 32 1 3.3490 3.2405 2.4370 33 1 2.5243 4.1489 1.1394 34 1 7.3568 4.3718 1.3380 35 1 7.1229 5.1365 -0.1201 36 1 3.5331 5.6126 0.2029 37 1 4.9552 6.0127 -0.7901 38 1 5.8264 7.4469 1.0354 39 1 4.4044 7.0468 2.0284 40 1 2.9223 8.0334 0.3020 41 1 4.3448 8.4331 -0.6905 42 1 2.6741 9.8903 -0.9100 43 1 3.8793 1.4555 -1.1747 44 1 4.0320 0.6557 0.4196 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594446856.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:09 Heat of formation + Delta-G solvation = -73.083734 kcal Electronic energy + Delta-G solvation = -20780.726253 eV Core-core repulsion = 17731.260608 eV Total energy + Delta-G solvation = -3049.465645 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.41631 -38.22028 -35.79134 -34.36180 -33.60282 -31.30478 -30.51627 -29.26744 -27.59326 -25.21088 -23.51850 -23.11133 -21.94974 -20.55141 -20.26725 -19.20631 -17.36259 -16.75928 -16.44399 -15.77663 -15.69580 -14.94669 -14.46493 -14.26830 -14.06421 -13.67967 -13.62813 -13.31664 -13.00891 -12.75725 -12.73003 -12.50602 -12.25546 -11.91352 -11.60195 -11.26904 -11.16701 -11.00466 -10.98486 -10.90366 -10.81813 -10.65400 -10.20405 -10.07400 -9.73250 -9.53859 -8.80457 -8.69838 -8.40445 -8.25525 -6.29256 -3.97280 2.53116 2.85891 3.47861 3.50477 3.68890 4.06338 4.27060 4.39694 4.53884 4.60869 4.72050 4.83338 4.91284 5.00513 5.03849 5.13066 5.19050 5.33822 5.39939 5.43500 5.48002 5.49968 5.55248 5.60316 5.66017 5.74928 5.86200 5.88126 5.98308 6.03133 6.14698 6.35688 6.70252 6.86347 7.06569 7.09699 7.37773 7.47284 7.53703 7.65560 8.04947 8.31546 8.54805 8.96490 9.74888 11.11384 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.021499 B = 0.003654 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.069034 B = 7661.660861 C = 8551.691134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.112 4.112 3 C -0.103 4.103 4 H 0.086 0.914 5 C -0.126 4.126 6 C 0.094 3.906 7 N -0.617 5.617 8 C 0.497 3.503 9 O -0.551 6.551 10 C 0.082 3.918 11 H 0.099 0.901 12 N -0.812 5.812 13 C -0.104 4.104 14 C -0.092 4.092 15 C 0.007 3.993 16 C -0.598 4.598 17 H 0.048 0.952 18 C 0.012 3.988 19 N -0.916 5.916 20 Si 1.068 2.932 21 H -0.283 1.283 22 H -0.288 1.288 23 H -0.288 1.288 24 C 0.107 3.893 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.338 0.662 35 H 0.350 0.650 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.065 0.935 39 H 0.046 0.954 40 H 0.002 0.998 41 H 0.005 0.995 42 H 0.268 0.732 43 H 0.075 0.925 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.706 -22.392 3.733 22.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.150 4.150 3 C -0.122 4.122 4 H 0.105 0.895 5 C -0.164 4.164 6 C -0.029 4.029 7 N -0.352 5.352 8 C 0.285 3.715 9 O -0.429 6.429 10 C -0.034 4.034 11 H 0.117 0.883 12 N -0.340 5.340 13 C -0.142 4.142 14 C -0.130 4.130 15 C -0.030 4.030 16 C -0.636 4.636 17 H 0.067 0.933 18 C -0.191 4.191 19 N -0.553 5.553 20 Si 0.897 3.103 21 H -0.209 1.209 22 H -0.215 1.215 23 H -0.215 1.215 24 C -0.016 4.016 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.103 0.897 31 H 0.095 0.905 32 H 0.089 0.911 33 H 0.096 0.904 34 H 0.150 0.850 35 H 0.164 0.836 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.065 0.935 40 H 0.021 0.979 41 H 0.023 0.977 42 H 0.078 0.922 43 H 0.094 0.906 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.787 -20.267 3.707 20.791 hybrid contribution 0.440 -2.665 -0.504 2.747 sum -2.347 -22.931 3.203 23.273 Atomic orbital electron populations 1.21767 0.95330 1.01697 1.02171 1.21443 0.96275 0.94941 1.02325 1.22453 0.94595 0.97096 0.98087 0.89521 1.22727 0.98677 0.97702 0.97289 1.22177 0.88374 0.99140 0.93169 1.48631 1.20735 1.22784 1.43029 1.22273 0.79599 0.87046 0.82568 1.90668 1.46313 1.70186 1.35740 1.21711 0.91354 0.89990 1.00312 0.88292 1.59058 1.01361 1.52663 1.20894 1.21657 0.97989 0.94699 0.99862 1.21400 1.01616 0.92268 0.97681 1.19246 0.94340 0.93684 0.95758 1.22081 1.33259 0.95290 1.12997 0.93321 1.25850 0.93696 1.02459 0.97107 1.70781 1.37403 1.30817 1.16288 0.83557 0.76175 0.75435 0.75156 1.20864 1.21497 1.21452 1.22267 0.94088 0.86018 0.99224 0.92443 0.92578 0.92686 0.91639 0.91657 0.89691 0.90491 0.91073 0.90392 0.84965 0.83584 0.92009 0.92033 0.91644 0.93531 0.97925 0.97709 0.92206 0.90624 0.91673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.82 37.16 0.36 -0.52 16 2 C -0.11 -0.70 5.44 -26.73 -0.15 -0.85 16 3 C -0.10 -0.82 3.01 -88.47 -0.27 -1.08 16 4 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 5 C -0.13 -0.93 5.90 -24.89 -0.15 -1.08 16 6 C 0.09 0.92 6.19 -3.06 -0.02 0.90 16 7 N -0.62 -7.53 3.33 -170.51 -0.57 -8.10 16 8 C 0.50 7.42 7.09 -10.99 -0.08 7.34 16 9 O -0.55 -9.83 16.51 5.56 0.09 -9.74 16 10 C 0.08 1.20 2.57 -68.87 -0.18 1.02 16 11 H 0.10 1.32 7.52 -51.93 -0.39 0.93 16 12 N -0.81 -11.76 8.44 -5.66 -0.05 -11.81 16 13 C -0.10 -1.79 4.83 -26.73 -0.13 -1.92 16 14 C -0.09 -1.93 5.04 -26.73 -0.13 -2.06 16 15 C 0.01 0.17 4.28 -27.88 -0.12 0.06 16 16 C -0.60 -17.49 9.11 -34.44 -0.31 -17.80 16 17 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 18 C 0.01 0.36 5.46 -17.82 -0.10 0.26 16 19 N -0.92 -28.70 13.65 55.43 0.76 -27.94 16 20 Si 1.07 25.81 29.90 -169.99 -5.08 20.73 16 21 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 22 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 24 C 0.11 1.11 6.37 -2.53 -0.02 1.10 16 25 H 0.06 0.32 7.75 -51.93 -0.40 -0.08 16 26 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.38 7.97 -51.93 -0.41 -0.03 16 30 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.08 0.49 7.91 -51.93 -0.41 0.08 16 32 H 0.07 0.63 7.94 -51.93 -0.41 0.22 16 33 H 0.08 0.83 6.70 -51.93 -0.35 0.48 16 34 H 0.34 4.26 9.06 -39.29 -0.36 3.91 16 35 H 0.35 5.25 8.58 -39.29 -0.34 4.92 16 36 H 0.06 1.01 6.63 -51.93 -0.34 0.67 16 37 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.06 1.43 7.75 -51.93 -0.40 1.03 16 39 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.00 0.07 8.01 -51.93 -0.42 -0.35 16 41 H 0.00 0.13 8.00 -51.93 -0.42 -0.29 16 42 H 0.27 8.35 7.22 -40.82 -0.29 8.06 16 43 H 0.08 0.89 8.04 -51.93 -0.42 0.47 16 44 H 0.07 0.63 8.04 -51.93 -0.42 0.22 16 LS Contribution 350.12 15.07 5.28 5.28 Total: -1.00 -33.64 350.12 -8.79 -42.43 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -7.94 Total: 3.80 kcal Atomic # 6 Polarization: -13.36 SS G_CDS: -1.28 Total: -14.64 kcal Atomic # 7 Polarization: -48.00 SS G_CDS: 0.14 Total: -47.85 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.09 Total: -9.74 kcal Atomic # 14 Polarization: 25.81 SS G_CDS: -5.08 Total: 20.73 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.64 -8.79 -42.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594446856.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.655 kcal (2) G-P(sol) polarization free energy of solvation -33.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds